Wall clock time and date at job start Tue Mar 31 2020 19:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.08999 * 109.47232 * 305.00021 * 3 2 1 5 5 C 1.53000 * 109.47021 * 184.99922 * 3 2 1 6 6 N 1.46498 * 109.47151 * 185.00135 * 5 3 2 7 7 C 1.34779 * 120.00089 * 179.97438 * 6 5 3 8 8 O 1.21569 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.47701 * 120.00164 * 179.97438 * 7 6 5 10 10 C 1.39602 * 120.13104 * 359.72372 * 9 7 6 11 11 C 1.38490 * 119.80201 * 179.79235 * 10 9 7 12 12 N 1.40059 * 119.96102 * 180.20916 * 11 10 9 13 13 C 1.34777 * 119.99544 * 213.62334 * 12 11 10 14 14 C 1.50700 * 119.99567 * 185.27523 * 13 12 11 15 15 O 1.21287 * 120.00459 * 5.28100 * 13 12 11 16 16 C 1.39036 * 120.07308 * 0.46334 * 11 10 9 17 17 C 1.38115 * 120.27330 * 359.79016 * 16 11 10 18 18 C 1.38329 * 120.19455 * 359.97438 * 17 16 11 19 19 F 1.35099 * 120.04098 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47001 * 65.00156 * 3 2 1 21 21 C 1.36941 * 119.99898 * 274.99609 * 20 3 2 22 22 H 1.08000 * 119.99904 * 359.97438 * 21 20 3 23 23 C 1.38811 * 119.99836 * 180.02562 * 21 20 3 24 24 N 1.31616 * 120.00101 * 359.72049 * 23 21 20 25 25 Si 1.86806 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47320 * 179.72226 * 25 23 21 27 27 H 1.48502 * 109.46666 * 299.72243 * 25 23 21 28 28 H 1.48498 * 109.46965 * 59.71583 * 25 23 21 29 29 H 1.09002 * 109.47131 * 300.00304 * 1 2 3 30 30 H 1.09005 * 109.46609 * 59.99874 * 1 2 3 31 31 H 1.08992 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46742 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.46559 * 120.00550 * 2 1 3 34 34 H 1.08999 * 109.47176 * 304.99991 * 5 3 2 35 35 H 1.09000 * 109.47203 * 64.99929 * 5 3 2 36 36 H 0.96998 * 120.00099 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.09899 * 359.97438 * 10 9 7 38 38 H 0.96997 * 119.99713 * 33.62890 * 12 11 10 39 39 H 1.08998 * 109.46959 * 60.00072 * 14 13 12 40 40 H 1.09002 * 109.47295 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47200 * 300.00029 * 14 13 12 42 42 H 1.07997 * 119.86701 * 179.76887 * 16 11 10 43 43 H 1.07997 * 119.90335 * 179.97438 * 17 16 11 44 44 H 0.97002 * 120.00352 * 94.99831 * 20 3 2 45 45 H 0.96998 * 120.00179 * 0.28379 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0631 2.8166 -0.0059 7 6 5.3859 3.0628 -0.0857 8 8 6.1656 2.1458 -0.2567 9 6 5.8882 4.4465 0.0345 10 6 4.9949 5.5022 0.2251 11 6 5.4737 6.7965 0.3412 12 7 4.5808 7.8577 0.5369 13 6 4.8463 9.0681 0.0069 14 6 3.9489 10.2389 0.3153 15 8 5.8073 9.2152 -0.7183 16 6 6.8393 7.0443 0.2585 17 6 7.7254 6.0027 0.0647 18 6 7.2598 4.7050 -0.0479 19 9 8.1293 3.6886 -0.2379 20 7 1.6525 2.0974 1.2518 21 6 0.4157 2.6735 1.3688 22 1 -0.2739 2.6453 0.5381 23 6 0.0487 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6387 4.0797 2.7146 26 1 -1.7857 4.6654 4.0712 27 1 -1.7854 5.1494 1.6950 28 1 -2.6864 3.0486 2.5044 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9954 0.8310 0.6659 35 1 3.8499 1.0376 -1.0960 36 1 3.4412 3.5482 0.1316 37 1 3.9339 5.3099 0.2847 38 1 3.7714 7.7214 1.0539 39 1 3.9418 10.4179 1.3905 40 1 4.3192 11.1259 -0.1987 41 1 2.9362 10.0195 -0.0232 42 1 7.2087 8.0553 0.3458 43 1 8.7849 6.2020 0.0010 44 1 2.2720 2.1230 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714124766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:33 Heat of formation + Delta-G solvation = -105.023133 kcal Electronic energy + Delta-G solvation = -29193.901365 eV Core-core repulsion = 24932.121702 eV Total energy + Delta-G solvation = -4261.779662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.97538 -41.75333 -40.89184 -39.20712 -38.38466 -35.78978 -35.53283 -34.40273 -32.70745 -31.69246 -31.29422 -29.37894 -29.23352 -25.96023 -25.18581 -24.18448 -23.53421 -22.28267 -21.78934 -21.07764 -19.59155 -19.28718 -18.59234 -18.46648 -17.47420 -17.42549 -17.00902 -16.73365 -16.62020 -16.31563 -15.97728 -15.77694 -15.62002 -15.42950 -14.97076 -14.71456 -14.58771 -14.48512 -14.28836 -14.12954 -13.76431 -13.58018 -13.30393 -13.21186 -13.01544 -12.72765 -12.66890 -12.55159 -12.11902 -11.98582 -11.81529 -11.54974 -11.49403 -11.29341 -11.15581 -10.98754 -10.83892 -10.43260 -10.12322 -9.25629 -9.05465 -8.22973 -5.19299 -0.50739 -0.11187 1.36984 1.65708 1.71922 1.73249 1.89093 1.92634 2.05362 2.51782 2.77584 3.04816 3.39411 3.49870 3.52889 3.73408 3.76100 3.84549 3.93757 4.00134 4.24742 4.25993 4.39383 4.47409 4.49826 4.55311 4.64760 4.67070 4.77085 4.79265 4.92119 4.95435 5.00527 5.04169 5.09559 5.13759 5.21033 5.33306 5.46829 5.64971 5.66053 5.76011 6.31536 6.37657 6.61177 7.00862 7.01905 7.17065 8.07124 8.20571 9.26701 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.003968 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.647729 B = 7054.394995 C = 9714.458905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.172 3.828 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.701 5.701 7 C 0.552 3.448 8 O -0.571 6.571 9 C -0.164 4.164 10 C -0.078 4.078 11 C 0.131 3.869 12 N -0.665 5.665 13 C 0.510 3.490 14 C -0.166 4.166 15 O -0.570 6.570 16 C -0.067 4.067 17 C -0.133 4.133 18 C 0.121 3.879 19 F -0.132 7.132 20 N -0.739 5.739 21 C -0.306 4.306 22 H 0.071 0.929 23 C -0.099 4.099 24 N -0.977 5.977 25 Si 1.117 2.883 26 H -0.301 1.301 27 H -0.273 1.273 28 H -0.289 1.289 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.411 0.589 37 H 0.151 0.849 38 H 0.430 0.570 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.156 0.844 43 H 0.172 0.828 44 H 0.358 0.642 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 11.208 -7.329 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.352 5.352 7 C 0.339 3.661 8 O -0.452 6.452 9 C -0.169 4.169 10 C -0.099 4.099 11 C 0.036 3.964 12 N -0.312 5.312 13 C 0.301 3.699 14 C -0.225 4.225 15 O -0.449 6.449 16 C -0.088 4.088 17 C -0.152 4.152 18 C 0.100 3.900 19 F -0.110 7.110 20 N -0.381 5.381 21 C -0.438 4.438 22 H 0.089 0.911 23 C -0.291 4.291 24 N -0.626 5.626 25 Si 0.944 3.056 26 H -0.228 1.228 27 H -0.199 1.199 28 H -0.215 1.215 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.168 0.832 38 H 0.270 0.730 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.173 0.827 43 H 0.189 0.811 44 H 0.191 0.809 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.694 11.523 -7.143 14.704 hybrid contribution 0.763 -1.310 -0.253 1.538 sum 6.457 10.212 -7.396 14.167 Atomic orbital electron populations 1.21679 0.95739 1.00571 1.01844 1.21989 0.96828 0.97255 1.01012 1.20617 0.90377 0.93300 0.89379 0.92284 1.21659 0.94624 0.82363 1.01775 1.45819 1.06506 1.10963 1.71917 1.18290 0.82707 0.88291 0.76769 1.90782 1.56664 1.46583 1.51160 1.19786 0.93176 0.93736 1.10163 1.21043 1.00075 0.90349 0.98430 1.17679 0.90312 0.87521 1.00868 1.43737 1.25063 1.08554 1.53852 1.21874 0.85977 0.84491 0.77543 1.21985 1.00187 0.94117 1.06203 1.90724 1.31981 1.84730 1.37469 1.21309 0.90832 1.00392 0.96237 1.21232 1.02829 0.88813 1.02302 1.17938 0.85808 0.85526 1.00772 1.91537 1.68328 1.59186 1.91997 1.42590 1.15952 1.67325 1.12250 1.20218 0.93135 1.30011 1.00412 0.91102 1.26784 1.07876 1.01967 0.92427 1.70995 1.08610 1.49759 1.33194 0.82725 0.71567 0.75905 0.75356 1.22783 1.19938 1.21544 0.93235 0.93191 0.92883 0.90692 0.93721 0.92854 0.90052 0.75157 0.83192 0.73025 0.86575 0.88306 0.86921 0.82668 0.81076 0.80945 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.98 0.66 -4.02 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.17 5.96 2.59 44.99 0.12 6.08 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.95 5.23 86.38 0.45 4.40 16 6 N -0.70 -23.04 5.34 -466.11 -2.49 -25.52 16 7 C 0.55 19.62 7.77 86.74 0.67 20.29 16 8 O -0.57 -24.00 15.33 -3.93 -0.06 -24.06 16 9 C -0.16 -5.01 5.88 -20.06 -0.12 -5.12 16 10 C -0.08 -1.97 9.45 22.66 0.21 -1.75 16 11 C 0.13 2.97 6.27 38.08 0.24 3.21 16 12 N -0.66 -11.39 5.34 -303.56 -1.62 -13.01 16 13 C 0.51 8.92 7.67 87.66 0.67 9.60 16 14 C -0.17 -1.37 10.32 71.24 0.74 -0.64 16 15 O -0.57 -14.60 14.77 -3.05 -0.05 -14.65 16 16 C -0.07 -1.51 8.65 22.43 0.19 -1.32 16 17 C -0.13 -3.04 10.01 22.26 0.22 -2.82 16 18 C 0.12 3.57 7.28 22.67 0.17 3.73 16 19 F -0.13 -4.49 15.54 44.97 0.70 -3.79 16 20 N -0.74 -31.74 4.50 -322.95 -1.45 -33.20 16 21 C -0.31 -14.66 7.75 84.03 0.65 -14.01 16 22 H 0.07 3.32 7.33 -2.91 -0.02 3.30 16 23 C -0.10 -5.08 5.50 84.86 0.47 -4.62 16 24 N -0.98 -55.56 13.70 21.65 0.30 -55.27 16 25 Si 1.12 46.89 29.92 68.60 2.05 48.94 16 26 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 27 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 28 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 29 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.41 13.03 6.17 -92.71 -0.57 12.46 16 37 H 0.15 3.53 6.40 -2.91 -0.02 3.51 16 38 H 0.43 5.35 8.82 -92.71 -0.82 4.54 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.83 8.12 -2.39 -0.02 0.81 16 41 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 42 H 0.16 3.28 6.40 -2.91 -0.02 3.27 16 43 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 44 H 0.36 16.88 6.63 -92.71 -0.61 16.26 16 45 H 0.24 13.91 6.77 -92.71 -0.63 13.29 16 Total: -1.00 -70.62 378.83 2.09 -68.52 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.80 Total: 43.02 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.52 Total: 9.00 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.27 Total: -127.00 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.11 Total: -38.70 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.70 Total: -3.79 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Total: -70.62 2.09 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714124766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.501 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds