Wall clock time and date at job start Tue Mar 31 2020 19:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46858 * 2 1 4 4 H 1.08993 * 109.47815 * 55.00172 * 3 2 1 5 5 C 1.53002 * 109.46828 * 175.00368 * 3 2 1 6 6 N 1.46500 * 109.47234 * 174.99860 * 5 3 2 7 7 C 1.34781 * 120.00153 * 179.97438 * 6 5 3 8 8 O 1.21565 * 120.00162 * 0.02562 * 7 6 5 9 9 C 1.47705 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.39605 * 120.13193 * 0.02706 * 9 7 6 11 11 C 1.38484 * 119.79948 * 179.97438 * 10 9 7 12 12 N 1.40062 * 119.95990 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00096 * 144.89773 * 12 11 10 14 14 C 1.50697 * 119.99781 * 184.60998 * 13 12 11 15 15 O 1.21282 * 119.99724 * 4.60757 * 13 12 11 16 16 C 1.39041 * 120.07680 * 0.02635 * 11 10 9 17 17 C 1.38107 * 120.27049 * 359.95031 * 16 11 10 18 18 C 1.38334 * 120.19393 * 0.04938 * 17 16 11 19 19 F 1.35101 * 120.03536 * 180.25255 * 18 17 16 20 20 N 1.46501 * 109.46895 * 294.99602 * 3 2 1 21 21 C 1.36939 * 119.99650 * 85.00984 * 20 3 2 22 22 H 1.07996 * 120.00286 * 359.97438 * 21 20 3 23 23 C 1.38812 * 119.99897 * 180.02562 * 21 20 3 24 24 N 1.31614 * 120.00154 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00042 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46926 * 90.00258 * 25 23 21 27 27 H 1.48496 * 109.47214 * 210.00191 * 25 23 21 28 28 H 1.48494 * 109.47067 * 330.00481 * 25 23 21 29 29 H 1.09003 * 109.46731 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46883 * 300.00089 * 1 2 3 31 31 H 1.08993 * 109.46951 * 60.00008 * 1 2 3 32 32 H 1.09002 * 109.47395 * 239.99986 * 2 1 3 33 33 H 1.08996 * 109.47442 * 119.99878 * 2 1 3 34 34 H 1.08996 * 109.47546 * 54.99711 * 5 3 2 35 35 H 1.09000 * 109.46934 * 294.99480 * 5 3 2 36 36 H 0.97005 * 119.99627 * 359.97438 * 6 5 3 37 37 H 1.07993 * 120.09928 * 359.95772 * 10 9 7 38 38 H 0.97007 * 119.99834 * 324.89487 * 12 11 10 39 39 H 1.08999 * 109.47269 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.47067 * 119.99660 * 14 13 12 41 41 H 1.08994 * 109.47153 * 239.99684 * 14 13 12 42 42 H 1.07999 * 119.86335 * 179.97438 * 16 11 10 43 43 H 1.08004 * 119.90125 * 180.02562 * 17 16 11 44 44 H 0.96994 * 120.00207 * 264.99955 * 20 3 2 45 45 H 0.96998 * 120.00533 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4444 0.1256 6 7 4.0631 2.8168 0.0058 7 6 5.3857 3.0631 0.0867 8 8 6.1653 2.1463 0.2585 9 6 5.8880 4.4468 -0.0347 10 6 4.9953 5.5016 -0.2326 11 6 5.4737 6.7963 -0.3449 12 7 4.5809 7.8572 -0.5429 13 6 4.8282 9.0591 0.0146 14 6 3.8179 10.1702 -0.1111 15 8 5.8638 9.2463 0.6175 16 6 6.8393 7.0443 -0.2613 17 6 7.7252 6.0031 -0.0651 18 6 7.2595 4.7055 0.0486 19 9 8.1285 3.6900 0.2456 20 7 1.6524 2.0974 -1.2519 21 6 0.4156 2.6735 -1.3688 22 1 -0.2742 2.6447 -0.5384 23 6 0.0482 3.2936 -2.5551 24 7 -1.1407 3.8468 -2.6678 25 14 1.2411 3.3428 -3.9918 26 1 1.0381 2.1444 -4.8450 27 1 0.9991 4.5685 -4.7944 28 1 2.6343 3.3545 -3.4782 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9954 0.8312 -0.6660 35 1 3.8499 1.0378 1.0960 36 1 3.4410 3.5483 -0.1316 37 1 3.9348 5.3085 -0.2981 38 1 3.7846 7.7269 -1.0814 39 1 2.9587 9.8172 -0.6814 40 1 3.4921 10.4791 0.8821 41 1 4.2720 11.0177 -0.6245 42 1 7.2087 8.0553 -0.3498 43 1 8.7847 6.2025 -0.0007 44 1 2.2719 2.1231 -1.9978 45 1 -1.3974 4.2804 -3.4966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714124767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:36 Heat of formation + Delta-G solvation = -101.243512 kcal Electronic energy + Delta-G solvation = -29260.773575 eV Core-core repulsion = 24999.157809 eV Total energy + Delta-G solvation = -4261.615766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95742 -41.74345 -40.86951 -39.18896 -38.35827 -35.78486 -35.40367 -34.21499 -32.68044 -32.05470 -31.70124 -29.57524 -29.25973 -25.96402 -24.99112 -24.05274 -23.49828 -22.25824 -21.76179 -21.13828 -19.85964 -19.13987 -18.59487 -18.44743 -17.43689 -17.30487 -17.14492 -16.79917 -16.64164 -16.09599 -16.05580 -15.78279 -15.61216 -15.01002 -14.98076 -14.69593 -14.52884 -14.48275 -14.33693 -14.16422 -14.06396 -13.63547 -13.30356 -13.10522 -13.01045 -12.88809 -12.87562 -12.65673 -12.31028 -12.09336 -11.90247 -11.59171 -11.46483 -11.39707 -11.26297 -10.97698 -10.87637 -10.40641 -10.08590 -9.27976 -9.26855 -7.92171 -5.24807 -0.48281 -0.10141 1.38588 1.40296 1.45951 1.50332 1.72015 1.95316 2.08139 2.53020 2.53797 3.06632 3.38332 3.43443 3.52297 3.60788 3.77501 3.88223 3.96537 4.02683 4.26431 4.31076 4.44805 4.51292 4.53003 4.55400 4.66426 4.71212 4.81343 4.82735 4.96171 4.99085 5.07248 5.08572 5.10853 5.20416 5.21291 5.38288 5.52481 5.67890 5.73595 5.90230 6.29753 6.32130 6.41657 7.01507 7.05667 7.15385 7.89466 8.08861 9.28496 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.004053 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.288584 B = 6906.809244 C = 8985.118159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.063 0.937 5 C 0.118 3.882 6 N -0.705 5.705 7 C 0.553 3.447 8 O -0.568 6.568 9 C -0.165 4.165 10 C -0.078 4.078 11 C 0.126 3.874 12 N -0.664 5.664 13 C 0.511 3.489 14 C -0.164 4.164 15 O -0.571 6.571 16 C -0.068 4.068 17 C -0.135 4.135 18 C 0.123 3.877 19 F -0.132 7.132 20 N -0.746 5.746 21 C -0.205 4.205 22 H 0.070 0.930 23 C -0.053 4.053 24 N -0.979 5.979 25 Si 0.936 3.064 26 H -0.296 1.296 27 H -0.298 1.298 28 H -0.253 1.253 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.155 0.845 38 H 0.430 0.570 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.157 0.843 43 H 0.170 0.830 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.126 9.201 4.887 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.081 0.919 5 C -0.006 4.006 6 N -0.356 5.356 7 C 0.341 3.659 8 O -0.449 6.449 9 C -0.170 4.170 10 C -0.099 4.099 11 C 0.031 3.969 12 N -0.311 5.311 13 C 0.302 3.698 14 C -0.223 4.223 15 O -0.449 6.449 16 C -0.088 4.088 17 C -0.154 4.154 18 C 0.102 3.898 19 F -0.110 7.110 20 N -0.390 5.390 21 C -0.336 4.336 22 H 0.088 0.912 23 C -0.245 4.245 24 N -0.631 5.631 25 Si 0.766 3.234 26 H -0.224 1.224 27 H -0.225 1.225 28 H -0.178 1.178 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.270 0.730 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.132 8.771 5.522 16.729 hybrid contribution -0.281 -0.095 -1.490 1.519 sum 12.851 8.676 4.032 16.021 Atomic orbital electron populations 1.21689 0.96218 1.00434 1.01695 1.21969 0.96224 0.96993 1.01729 1.20681 0.90707 0.93471 0.88980 0.91887 1.21709 0.94128 0.82310 1.02440 1.45868 1.06524 1.11165 1.72065 1.18231 0.82734 0.88151 0.76816 1.90790 1.56659 1.46495 1.50974 1.19800 0.93073 0.93905 1.10183 1.21107 1.00297 0.90236 0.98229 1.17714 0.90227 0.87569 1.01355 1.43795 1.26158 1.09249 1.51937 1.21827 0.88201 0.83682 0.76102 1.21924 0.98009 0.95881 1.06509 1.90700 1.28878 1.82205 1.43159 1.21443 0.90940 1.00486 0.95924 1.21251 1.02792 0.88929 1.02476 1.17944 0.85896 0.85471 1.00531 1.91541 1.68388 1.59218 1.91866 1.42833 1.15392 1.67684 1.13105 1.18952 0.91110 1.25128 0.98435 0.91194 1.25211 0.97731 1.01561 0.99968 1.69839 1.21472 1.44573 1.27180 0.85712 0.80476 0.76379 0.80865 1.22384 1.22543 1.17791 0.92899 0.93800 0.93384 0.92667 0.90351 0.91953 0.89710 0.75047 0.82739 0.73010 0.87801 0.87446 0.87012 0.82526 0.81286 0.80446 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -3.80 5.61 30.60 0.17 -3.63 16 3 C 0.17 5.39 2.59 44.99 0.12 5.51 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.45 5.23 86.38 0.45 3.90 16 6 N -0.70 -20.82 5.34 -466.11 -2.49 -23.31 16 7 C 0.55 18.00 7.77 86.74 0.67 18.67 16 8 O -0.57 -22.18 15.33 -3.92 -0.06 -22.24 16 9 C -0.16 -4.63 5.88 -20.07 -0.12 -4.75 16 10 C -0.08 -1.78 9.45 22.66 0.21 -1.57 16 11 C 0.13 2.66 6.29 38.08 0.24 2.90 16 12 N -0.66 -10.62 5.34 -303.57 -1.62 -12.24 16 13 C 0.51 8.61 7.78 87.66 0.68 9.29 16 14 C -0.16 -1.35 10.39 71.23 0.74 -0.61 16 15 O -0.57 -14.06 14.53 -3.04 -0.04 -14.10 16 16 C -0.07 -1.44 8.69 22.43 0.19 -1.24 16 17 C -0.14 -2.92 10.00 22.26 0.22 -2.69 16 18 C 0.12 3.39 7.28 22.67 0.17 3.55 16 19 F -0.13 -4.22 15.54 44.97 0.70 -3.52 16 20 N -0.75 -29.21 4.31 -322.94 -1.39 -30.60 16 21 C -0.21 -9.91 8.24 84.03 0.69 -9.22 16 22 H 0.07 3.72 7.55 -2.91 -0.02 3.70 16 23 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 24 N -0.98 -56.93 13.97 21.65 0.30 -56.62 16 25 Si 0.94 41.36 27.74 68.60 1.90 43.26 16 26 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.25 -10.01 6.52 99.48 0.65 -9.36 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 11.54 6.17 -92.70 -0.57 10.97 16 37 H 0.16 3.16 6.40 -2.91 -0.02 3.14 16 38 H 0.43 4.74 8.66 -92.70 -0.80 3.93 16 39 H 0.10 0.44 7.92 -2.39 -0.02 0.42 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.16 3.25 6.21 -2.91 -0.02 3.23 16 43 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.36 14.31 5.66 -92.71 -0.52 13.79 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.18 376.86 1.98 -69.20 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.90 Total: 36.46 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.57 Total: 13.71 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -5.20 Total: -122.77 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.10 Total: -36.35 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.70 Total: -3.52 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.90 Total: 43.26 kcal Total: -71.18 1.98 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714124767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.039 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds