Wall clock time and date at job start Tue Mar 31 2020 21:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47666 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00001 * 2 1 3 5 5 C 1.52993 * 109.47073 * 299.99964 * 4 2 1 6 6 C 1.52999 * 109.47571 * 300.00205 * 5 4 2 7 7 C 1.53001 * 109.47146 * 59.99463 * 6 5 4 8 8 C 1.52993 * 109.47324 * 300.00688 * 7 6 5 9 9 C 1.53006 * 109.47073 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47053 * 175.02590 * 9 8 7 11 11 C 1.36933 * 120.00089 * 184.97765 * 10 9 8 12 12 H 1.08007 * 119.99803 * 0.02562 * 11 10 9 13 13 C 1.38813 * 120.00328 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99823 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47180 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47434 * 119.99939 * 15 13 11 18 18 H 1.48502 * 109.47112 * 239.99740 * 15 13 11 19 19 N 1.46497 * 109.47015 * 299.99553 * 8 7 6 20 20 C 1.34779 * 120.00160 * 304.36601 * 19 8 7 21 21 O 1.21282 * 119.99798 * 354.61779 * 20 19 8 22 22 C 1.50703 * 119.99812 * 174.61139 * 20 19 8 23 23 C 1.50708 * 109.46856 * 180.02562 * 22 20 19 24 24 C 1.33632 * 126.03766 * 89.71605 * 23 22 20 25 25 N 1.31783 * 114.49842 * 179.78825 * 24 23 22 26 26 C 1.29033 * 117.12622 * 0.52299 * 25 24 23 27 27 S 1.70976 * 110.16167 * 359.71390 * 26 25 24 28 28 H 1.09005 * 109.47315 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.47350 * 59.99596 * 1 2 3 30 30 H 1.09003 * 109.47666 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47005 * 60.00507 * 4 2 1 32 32 H 1.09002 * 109.46883 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47043 * 60.00069 * 5 4 2 34 34 H 1.09003 * 109.47286 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.46826 * 299.99997 * 6 5 4 36 36 H 1.08999 * 109.47323 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47062 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.46920 * 60.00698 * 7 6 5 39 39 H 1.08998 * 109.46809 * 295.02724 * 9 8 7 40 40 H 1.09001 * 109.46745 * 55.02702 * 9 8 7 41 41 H 0.97003 * 120.00251 * 4.98379 * 10 9 8 42 42 H 0.97000 * 119.99674 * 179.97438 * 14 13 11 43 43 H 0.97002 * 119.99878 * 124.37005 * 19 8 7 44 44 H 1.08999 * 109.47314 * 299.99629 * 22 20 19 45 45 H 1.08998 * 109.47276 * 60.00637 * 22 20 19 46 46 H 1.07999 * 122.75280 * 359.97438 * 24 23 22 47 47 H 1.07996 * 124.91652 * 179.68083 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0398 -2.8850 -0.0001 7 6 1.5299 -2.1637 1.2492 8 6 2.0399 -0.7213 1.2492 9 6 1.5294 0.0001 2.4982 10 7 2.1131 1.3424 2.5596 11 6 1.8809 2.1409 3.6475 12 1 1.2678 1.7809 4.4606 13 6 2.4335 3.4130 3.7055 14 7 3.1810 3.8515 2.7149 15 14 2.1172 4.5019 5.1900 16 1 1.2526 3.7804 6.1579 17 1 3.4091 4.8428 5.8380 18 1 1.4382 5.7485 4.7538 19 7 3.5049 -0.7213 1.2492 20 6 4.1788 -1.3802 2.2127 21 8 3.5763 -1.8904 3.1334 22 6 5.6808 -1.4830 2.1458 23 6 6.1842 -2.2639 3.3325 24 6 6.3538 -3.5883 3.3875 25 7 6.8119 -4.0331 4.5403 26 6 7.0282 -3.1588 5.4643 27 16 6.6456 -1.5927 4.8949 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6766 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2490 33 1 0.4399 -2.1637 -1.2493 34 1 1.8928 -2.6775 -2.1395 35 1 3.1298 -2.8851 -0.0001 36 1 1.6768 -3.9128 -0.0003 37 1 1.8928 -2.6779 2.1392 38 1 0.4399 -2.1637 1.2493 39 1 0.4431 0.0779 2.4543 40 1 1.8179 -0.5625 3.3861 41 1 2.6640 1.6656 1.8295 42 1 3.5668 4.7405 2.7553 43 1 3.9899 -0.2471 0.5558 44 1 5.9696 -1.9930 1.2268 45 1 6.1144 -0.4830 2.1582 46 1 6.1363 -4.2403 2.5544 47 1 7.3970 -3.3838 6.4540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714186124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:25 Heat of formation + Delta-G solvation = 12.604156 kcal Electronic energy + Delta-G solvation = -28617.663324 eV Core-core repulsion = 24927.197539 eV Total energy + Delta-G solvation = -3690.465784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62951 -39.51376 -37.98837 -34.69536 -33.27454 -32.71943 -31.89795 -30.99924 -29.62757 -27.79767 -26.32645 -25.04012 -24.40305 -22.89910 -22.27822 -20.83989 -20.22016 -19.69119 -18.41993 -17.84270 -17.16571 -16.95260 -15.91362 -15.43695 -15.27687 -14.83669 -14.48607 -14.35364 -13.98325 -13.81155 -13.79692 -13.28723 -13.21708 -13.14755 -12.85502 -12.78556 -12.39118 -12.29003 -11.88995 -11.70855 -11.62093 -11.39421 -11.16540 -11.07695 -10.88382 -10.80932 -10.70441 -10.33486 -10.07613 -9.94731 -9.82594 -9.60231 -9.57990 -9.32890 -9.06524 -8.83763 -8.71829 -8.46759 -6.81962 -5.73359 -2.98549 0.78394 1.47299 1.87529 2.89226 3.05141 3.44792 3.51535 3.53243 3.58468 4.38630 4.62904 4.73662 4.82270 4.88188 4.91367 5.11871 5.17230 5.27775 5.28882 5.35213 5.42401 5.53065 5.54639 5.62923 5.69369 5.78734 5.82035 5.85525 5.89068 6.05338 6.10114 6.16803 6.20082 6.22163 6.29750 6.32403 6.43336 6.54307 6.58564 6.67248 6.74753 6.99976 7.16354 7.75335 7.76263 7.94217 8.46755 8.66237 9.58362 10.16947 10.52692 11.50024 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.005607 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.136213 B = 4992.542336 C = 8048.102962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.184 3.816 9 C 0.140 3.860 10 N -0.723 5.723 11 C -0.226 4.226 12 H 0.068 0.932 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.293 1.293 19 N -0.707 5.707 20 C 0.523 3.477 21 O -0.524 6.524 22 C -0.069 4.069 23 C -0.189 4.189 24 C 0.035 3.965 25 N -0.474 5.474 26 C 0.001 3.999 27 S 0.155 5.845 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.043 0.957 41 H 0.381 0.619 42 H 0.252 0.748 43 H 0.396 0.604 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.170 0.830 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -13.382 -7.280 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.170 4.170 8 C 0.099 3.901 9 C 0.011 3.989 10 N -0.367 5.367 11 C -0.357 4.357 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.587 5.587 15 Si 0.734 3.266 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.220 1.220 19 N -0.358 5.358 20 C 0.308 3.692 21 O -0.400 6.400 22 C -0.111 4.111 23 C -0.311 4.311 24 C -0.116 4.116 25 N -0.187 5.187 26 C -0.296 4.296 27 S 0.407 5.593 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.230 0.770 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.187 0.813 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.227 -13.312 -5.835 15.137 hybrid contribution 0.115 0.601 -0.365 0.712 sum 4.343 -12.711 -6.200 14.794 Atomic orbital electron populations 1.21918 0.94420 1.01567 1.02377 1.21257 0.96806 0.99987 0.92847 0.89717 1.21587 1.00253 0.95573 0.97738 1.21571 1.00949 0.95713 0.97455 1.21433 1.00589 0.98265 0.94602 1.21932 1.00771 0.95270 0.98993 1.20499 0.78794 0.94781 0.96073 1.21155 0.95489 0.87288 0.94917 1.42195 1.60574 1.11365 1.22591 1.19274 1.24601 0.94853 0.96981 0.91448 1.24641 1.00747 0.97664 0.98067 1.69649 1.38552 1.18546 1.31950 0.86172 0.77285 0.80694 0.82458 1.20668 1.22019 1.22041 1.45835 1.06933 1.53491 1.29563 1.20057 0.88610 0.78570 0.82004 1.90660 1.69539 1.47159 1.32598 1.20090 0.94026 1.01630 0.95365 1.25320 1.09062 0.97461 0.99297 1.21576 1.01667 0.92249 0.96120 1.66293 1.14660 1.37016 1.00745 1.28289 1.05292 0.92523 1.03450 1.84327 1.57399 1.11548 1.05979 0.91321 0.92986 0.92533 0.92082 0.92298 0.91796 0.92733 0.92408 0.92687 0.89727 0.91250 0.96038 0.93873 0.78558 0.93829 0.77021 0.87255 0.87483 0.81287 0.78811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.15 37.15 0.30 -1.67 16 2 C -0.09 -1.26 2.15 -90.62 -0.20 -1.46 16 3 H 0.08 1.41 7.08 -51.93 -0.37 1.04 16 4 C -0.11 -1.26 5.28 -26.73 -0.14 -1.40 16 5 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 6 C -0.11 -1.28 5.77 -26.73 -0.15 -1.44 16 7 C -0.13 -1.86 4.18 -26.73 -0.11 -1.97 16 8 C 0.18 2.86 0.09 -131.82 -0.01 2.85 16 9 C 0.14 2.88 4.72 -4.04 -0.02 2.86 16 10 N -0.72 -17.71 5.19 -59.91 -0.31 -18.02 16 11 C -0.23 -6.32 9.99 -15.06 -0.15 -6.47 16 12 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 13 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 14 N -0.94 -27.64 13.06 55.49 0.72 -26.91 16 15 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 19 N -0.71 -10.30 3.49 -47.61 -0.17 -10.46 16 20 C 0.52 8.22 7.15 -10.98 -0.08 8.14 16 21 O -0.52 -10.16 12.33 5.56 0.07 -10.09 16 22 C -0.07 -0.84 6.24 -29.03 -0.18 -1.02 16 23 C -0.19 -2.59 5.09 -35.92 -0.18 -2.77 16 24 C 0.04 0.48 11.25 -19.19 -0.22 0.26 16 25 N -0.47 -6.77 10.54 -15.75 -0.17 -6.93 16 26 C 0.00 0.02 12.23 51.59 0.63 0.65 16 27 S 0.15 2.09 23.22 -107.50 -2.50 -0.41 16 28 H 0.07 1.09 6.32 -51.93 -0.33 0.76 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 6.95 -51.93 -0.36 0.25 16 33 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.41 6.05 -51.93 -0.31 1.09 16 38 H 0.07 0.95 6.43 -51.92 -0.33 0.62 16 39 H 0.02 0.46 6.17 -51.93 -0.32 0.14 16 40 H 0.04 1.02 6.45 -51.93 -0.34 0.68 16 41 H 0.38 9.52 6.45 -40.82 -0.26 9.26 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.40 5.00 7.48 -40.82 -0.31 4.69 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.30 371.41 -9.36 -42.66 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.83 Total: 12.32 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.76 Total: -5.38 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.08 Total: -62.33 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.50 Total: -0.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -9.36 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.264 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds