Wall clock time and date at job start Tue Mar 31 2020 21:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46969 * 2 1 4 4 C 1.52999 * 109.46843 * 239.99900 * 2 1 3 5 5 C 1.52997 * 109.46871 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47297 * 59.99762 * 5 4 2 7 7 C 1.52999 * 109.47354 * 299.99942 * 6 5 4 8 8 C 1.52997 * 109.46871 * 59.99797 * 7 6 5 9 9 C 1.52999 * 109.46871 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47647 * 294.14765 * 9 8 7 11 11 C 1.36934 * 120.00396 * 177.74040 * 10 9 8 12 12 H 1.07996 * 119.99771 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99692 * 179.72455 * 11 10 9 14 14 N 1.31620 * 120.00333 * 0.27629 * 13 11 10 15 15 Si 1.86804 * 119.99617 * 180.27465 * 13 11 10 16 16 H 1.48495 * 109.47285 * 59.99979 * 15 13 11 17 17 H 1.48502 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47255 * 299.99788 * 15 13 11 19 19 N 1.46501 * 109.46867 * 60.00447 * 8 7 6 20 20 C 1.34779 * 119.99506 * 167.01828 * 19 8 7 21 21 O 1.21274 * 120.00545 * 1.90964 * 20 19 8 22 22 C 1.50709 * 119.99567 * 181.91961 * 20 19 8 23 23 C 1.50704 * 109.47062 * 179.97438 * 22 20 19 24 24 C 1.33641 * 126.03673 * 89.99432 * 23 22 20 25 25 N 1.31782 * 114.49679 * 179.97438 * 24 23 22 26 26 C 1.29019 * 117.12708 * 0.02562 * 25 24 23 27 27 S 1.70976 * 110.16855 * 359.71816 * 26 25 24 28 28 H 1.09006 * 109.46689 * 292.18475 * 1 2 3 29 29 H 1.08997 * 109.46943 * 52.18143 * 1 2 3 30 30 H 1.08997 * 109.47314 * 172.18936 * 1 2 3 31 31 H 1.09006 * 109.46881 * 299.99568 * 4 2 1 32 32 H 1.08995 * 109.47309 * 60.00194 * 4 2 1 33 33 H 1.09002 * 109.47297 * 179.97438 * 5 4 2 34 34 H 1.09005 * 109.47062 * 299.99863 * 5 4 2 35 35 H 1.08997 * 109.47027 * 60.00392 * 6 5 4 36 36 H 1.09004 * 109.47057 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.47165 * 299.99997 * 7 6 5 38 38 H 1.08995 * 109.47309 * 179.97438 * 7 6 5 39 39 H 1.09011 * 109.46913 * 174.14698 * 9 8 7 40 40 H 1.09000 * 109.47539 * 54.15235 * 9 8 7 41 41 H 0.97006 * 119.99245 * 357.73691 * 10 9 8 42 42 H 0.97000 * 119.99692 * 179.97438 * 14 13 11 43 43 H 0.96999 * 120.00550 * 347.00940 * 19 8 7 44 44 H 1.09000 * 109.46534 * 299.99439 * 22 20 19 45 45 H 1.08997 * 109.47482 * 59.99269 * 22 20 19 46 46 H 1.08003 * 122.74927 * 0.02562 * 24 23 22 47 47 H 1.08004 * 124.91571 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0396 -0.7215 1.2493 9 6 1.5296 -0.0008 2.4988 10 7 1.8990 -0.7687 3.6905 11 6 1.5874 -0.2922 4.9359 12 1 1.0696 0.6498 5.0396 13 6 1.9324 -1.0227 6.0647 14 7 2.5638 -2.1705 5.9383 15 14 1.5004 -0.3764 7.7633 16 1 0.0278 -0.2196 7.8736 17 1 1.9751 -1.3351 8.7932 18 1 2.1554 0.9397 7.9736 19 7 1.5508 -2.1026 1.2491 20 6 0.2537 -2.3583 1.5110 21 8 -0.5162 -1.4432 1.7127 22 6 -0.2401 -3.7816 1.5535 23 6 -1.7147 -3.7927 1.8640 24 6 -2.7068 -3.7527 0.9695 25 7 -3.9159 -3.7739 1.4933 26 6 -3.9990 -3.8291 2.7796 27 16 -2.4353 -3.8683 3.4701 28 1 -0.3633 0.3881 0.9517 29 1 -0.3633 0.6301 -0.8118 30 1 -0.3634 -1.0181 -0.1397 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.9333 -1.2361 -2.1387 34 1 3.9337 0.3057 -1.2487 35 1 3.7158 -2.4709 0.0001 36 1 5.1695 -1.4434 0.0007 37 1 3.9333 0.3055 1.2498 38 1 3.9321 -1.2364 2.1395 39 1 0.4446 0.0913 2.4478 40 1 1.9763 0.9920 2.5534 41 1 2.3644 -1.6147 3.5973 42 1 2.8052 -2.6807 6.7272 43 1 2.1606 -2.8329 1.0603 44 1 -0.0684 -4.2546 0.5866 45 1 0.2979 -4.3299 2.3269 46 1 -2.5320 -3.7075 -0.0953 47 1 -4.9225 -3.8525 3.3390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714186125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:28 Heat of formation + Delta-G solvation = 28.814865 kcal Electronic energy + Delta-G solvation = -28989.576817 eV Core-core repulsion = 25299.813982 eV Total energy + Delta-G solvation = -3689.762835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74728 -39.39373 -37.69138 -34.60459 -33.23020 -32.86254 -32.10221 -31.09593 -29.40722 -27.49347 -26.30714 -24.97253 -24.43126 -22.92175 -21.17035 -21.10372 -20.40957 -19.81468 -18.73259 -17.87593 -17.11574 -16.94519 -16.03252 -15.18585 -15.15936 -14.62603 -14.37794 -14.25464 -13.87628 -13.84442 -13.71139 -13.52952 -13.28295 -13.04400 -12.90667 -12.51676 -12.42186 -12.11094 -11.75614 -11.64323 -11.42784 -11.28956 -11.13939 -10.94789 -10.82373 -10.73879 -10.71120 -10.34925 -10.11372 -9.95731 -9.61880 -9.57511 -9.47240 -9.26694 -8.96833 -8.74788 -8.57569 -8.28819 -6.74893 -5.69446 -2.93871 0.88884 1.59120 1.99759 2.97917 3.15928 3.48136 3.52061 3.53811 3.65881 4.48011 4.65768 4.83414 4.85437 4.89181 4.90302 5.19224 5.21832 5.28013 5.31413 5.36604 5.49240 5.60695 5.63116 5.66460 5.66866 5.74683 5.81451 5.88822 6.02582 6.09013 6.14481 6.24373 6.27818 6.30063 6.32130 6.39910 6.44046 6.55032 6.67651 6.71932 6.85018 7.12876 7.29395 7.78466 7.85073 8.00606 8.50803 8.77787 9.62212 10.21604 10.57484 11.53869 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.006933 B = 0.006672 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4037.533943 B = 4195.425569 C = 7362.695599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.183 3.817 9 C 0.132 3.868 10 N -0.722 5.722 11 C -0.223 4.223 12 H 0.066 0.934 13 C -0.016 4.016 14 N -0.938 5.938 15 Si 0.901 3.099 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.288 1.288 19 N -0.711 5.711 20 C 0.517 3.483 21 O -0.503 6.503 22 C -0.068 4.068 23 C -0.189 4.189 24 C 0.033 3.967 25 N -0.475 5.475 26 C -0.004 4.004 27 S 0.167 5.833 28 H 0.081 0.919 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.381 0.619 42 H 0.252 0.748 43 H 0.393 0.607 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.168 0.832 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -4.594 -14.551 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.097 3.903 9 C 0.005 3.995 10 N -0.366 5.366 11 C -0.355 4.355 12 H 0.084 0.916 13 C -0.211 4.211 14 N -0.588 5.588 15 Si 0.733 3.267 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.215 1.215 19 N -0.363 5.363 20 C 0.302 3.698 21 O -0.377 6.377 22 C -0.110 4.110 23 C -0.311 4.311 24 C -0.119 4.119 25 N -0.189 5.189 26 C -0.301 4.301 27 S 0.420 5.580 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.215 0.785 42 H 0.062 0.938 43 H 0.227 0.773 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.185 0.815 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.243 -3.854 -13.519 14.426 hybrid contribution 0.440 -0.186 0.090 0.486 sum -2.803 -4.040 -13.428 14.300 Atomic orbital electron populations 1.22311 0.93798 1.01758 1.01674 1.21483 0.96916 0.98945 0.93887 0.91117 1.21544 0.95000 1.00708 0.97422 1.21551 0.95985 1.00605 0.97494 1.21558 1.00143 0.99169 0.94796 1.21786 0.93820 1.01922 0.98218 1.20564 0.93027 0.81383 0.95342 1.21320 1.00040 0.93145 0.85040 1.42166 1.69844 1.24356 1.00255 1.19161 1.29700 1.02887 0.83725 0.91644 1.24615 1.01882 0.97211 0.97396 1.69628 1.46298 1.14652 1.28213 0.86340 0.77993 0.77633 0.84718 1.21436 1.21840 1.21520 1.45814 1.09418 1.08547 1.72571 1.19917 0.82474 0.90100 0.77310 1.90720 1.55722 1.45035 1.46272 1.20073 0.89714 0.96800 1.04419 1.25315 0.99712 1.10485 0.95591 1.21546 0.85766 1.03589 1.01013 1.66283 1.26144 1.15454 1.10972 1.28277 1.02599 1.05605 0.93576 1.84483 0.99946 1.65039 1.08517 0.90022 0.95625 0.92255 0.92147 0.92621 0.92569 0.92168 0.92334 0.92045 0.90850 0.90122 0.91850 0.96680 0.78549 0.93809 0.77311 0.87690 0.87532 0.81460 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.30 37.16 0.27 -1.84 16 2 C -0.09 -1.26 2.07 -90.62 -0.19 -1.45 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.22 5.04 -26.73 -0.13 -1.35 16 5 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 6 C -0.12 -1.29 5.75 -26.73 -0.15 -1.45 16 7 C -0.12 -1.69 4.72 -26.73 -0.13 -1.82 16 8 C 0.18 2.80 0.32 -131.82 -0.04 2.76 16 9 C 0.13 2.72 4.41 -4.04 -0.02 2.70 16 10 N -0.72 -17.74 5.04 -59.91 -0.30 -18.04 16 11 C -0.22 -6.27 9.99 -15.06 -0.15 -6.42 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 13 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 14 N -0.94 -27.69 13.06 55.49 0.72 -26.96 16 15 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 N -0.71 -10.06 3.53 -47.61 -0.17 -10.23 16 20 C 0.52 8.11 5.97 -10.98 -0.07 8.04 16 21 O -0.50 -9.53 9.38 5.56 0.05 -9.48 16 22 C -0.07 -0.86 6.24 -29.03 -0.18 -1.04 16 23 C -0.19 -2.71 5.09 -35.92 -0.18 -2.89 16 24 C 0.03 0.46 11.25 -19.18 -0.22 0.25 16 25 N -0.47 -7.13 10.54 -15.75 -0.17 -7.29 16 26 C 0.00 -0.05 12.23 51.58 0.63 0.58 16 27 S 0.17 2.46 23.22 -107.50 -2.50 -0.04 16 28 H 0.08 1.48 5.06 -51.93 -0.26 1.22 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.93 5.49 -51.93 -0.29 0.64 16 31 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.59 6.63 -51.93 -0.34 0.24 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 39 H 0.06 1.44 4.22 -51.92 -0.22 1.22 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 9.60 6.58 -40.82 -0.27 9.33 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.39 4.65 6.98 -40.82 -0.29 4.36 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 47 H 0.19 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.70 370.98 -9.66 -42.36 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.06 Total: 12.22 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.81 Total: -5.85 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.09 Total: -62.52 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.05 Total: -9.48 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.50 Total: -0.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.70 -9.66 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.170 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds