Wall clock time and date at job start Tue Mar 31 2020 21:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46969 * 2 1 4 4 C 1.52999 * 109.46843 * 239.99900 * 2 1 3 5 5 C 1.52997 * 109.46871 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47297 * 59.99762 * 5 4 2 7 7 C 1.52999 * 109.47354 * 299.99942 * 6 5 4 8 8 C 1.52997 * 109.46871 * 59.99797 * 7 6 5 9 9 C 1.52999 * 109.46871 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47647 * 294.14765 * 9 8 7 11 11 C 1.36934 * 120.00396 * 177.74040 * 10 9 8 12 12 H 1.07996 * 119.99771 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99692 * 179.72455 * 11 10 9 14 14 N 1.31620 * 120.00333 * 0.27629 * 13 11 10 15 15 Si 1.86804 * 119.99617 * 180.27465 * 13 11 10 16 16 H 1.48495 * 109.47285 * 59.99979 * 15 13 11 17 17 H 1.48502 * 109.47007 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47255 * 299.99788 * 15 13 11 19 19 N 1.46501 * 109.46867 * 60.00447 * 8 7 6 20 20 C 1.34779 * 119.99506 * 167.01828 * 19 8 7 21 21 O 1.21274 * 120.00545 * 1.90964 * 20 19 8 22 22 C 1.50709 * 119.99567 * 181.91961 * 20 19 8 23 23 C 1.50704 * 109.47062 * 179.97438 * 22 20 19 24 24 C 1.33641 * 126.03673 * 89.99432 * 23 22 20 25 25 N 1.31782 * 114.49679 * 179.97438 * 24 23 22 26 26 C 1.29019 * 117.12708 * 0.02562 * 25 24 23 27 27 S 1.70976 * 110.16855 * 359.71816 * 26 25 24 28 28 H 1.09006 * 109.46689 * 292.18475 * 1 2 3 29 29 H 1.08997 * 109.46943 * 52.18143 * 1 2 3 30 30 H 1.08997 * 109.47314 * 172.18936 * 1 2 3 31 31 H 1.09006 * 109.46881 * 299.99568 * 4 2 1 32 32 H 1.08995 * 109.47309 * 60.00194 * 4 2 1 33 33 H 1.09002 * 109.47297 * 179.97438 * 5 4 2 34 34 H 1.09005 * 109.47062 * 299.99863 * 5 4 2 35 35 H 1.08997 * 109.47027 * 60.00392 * 6 5 4 36 36 H 1.09004 * 109.47057 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.47165 * 299.99997 * 7 6 5 38 38 H 1.08995 * 109.47309 * 179.97438 * 7 6 5 39 39 H 1.09011 * 109.46913 * 174.14698 * 9 8 7 40 40 H 1.09000 * 109.47539 * 54.15235 * 9 8 7 41 41 H 0.97006 * 119.99245 * 357.73691 * 10 9 8 42 42 H 0.97000 * 119.99692 * 179.97438 * 14 13 11 43 43 H 0.96999 * 120.00550 * 347.00940 * 19 8 7 44 44 H 1.09000 * 109.46534 * 299.99439 * 22 20 19 45 45 H 1.08997 * 109.47482 * 59.99269 * 22 20 19 46 46 H 1.08003 * 122.74927 * 0.02562 * 24 23 22 47 47 H 1.08004 * 124.91571 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0396 -0.7215 1.2493 9 6 1.5296 -0.0008 2.4988 10 7 1.8990 -0.7687 3.6905 11 6 1.5874 -0.2922 4.9359 12 1 1.0696 0.6498 5.0396 13 6 1.9324 -1.0227 6.0647 14 7 2.5638 -2.1705 5.9383 15 14 1.5004 -0.3764 7.7633 16 1 0.0278 -0.2196 7.8736 17 1 1.9751 -1.3351 8.7932 18 1 2.1554 0.9397 7.9736 19 7 1.5508 -2.1026 1.2491 20 6 0.2537 -2.3583 1.5110 21 8 -0.5162 -1.4432 1.7127 22 6 -0.2401 -3.7816 1.5535 23 6 -1.7147 -3.7927 1.8640 24 6 -2.7068 -3.7527 0.9695 25 7 -3.9159 -3.7739 1.4933 26 6 -3.9990 -3.8291 2.7796 27 16 -2.4353 -3.8683 3.4701 28 1 -0.3633 0.3881 0.9517 29 1 -0.3633 0.6301 -0.8118 30 1 -0.3634 -1.0181 -0.1397 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.9333 -1.2361 -2.1387 34 1 3.9337 0.3057 -1.2487 35 1 3.7158 -2.4709 0.0001 36 1 5.1695 -1.4434 0.0007 37 1 3.9333 0.3055 1.2498 38 1 3.9321 -1.2364 2.1395 39 1 0.4446 0.0913 2.4478 40 1 1.9763 0.9920 2.5534 41 1 2.3644 -1.6147 3.5973 42 1 2.8052 -2.6807 6.7272 43 1 2.1606 -2.8329 1.0603 44 1 -0.0684 -4.2546 0.5866 45 1 0.2979 -4.3299 2.3269 46 1 -2.5320 -3.7075 -0.0953 47 1 -4.9225 -3.8525 3.3390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714186125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:27 Heat of formation + Delta-G solvation = 7.942689 kcal Electronic energy + Delta-G solvation = -28990.481903 eV Core-core repulsion = 25299.813982 eV Total energy + Delta-G solvation = -3690.667921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97360 -40.48792 -38.86253 -36.34785 -34.57086 -34.09255 -33.22283 -32.81820 -30.85419 -28.56691 -27.68825 -26.47851 -25.53488 -24.67527 -22.42602 -22.25854 -21.50408 -20.87697 -19.98602 -19.16274 -18.95327 -18.13909 -17.24951 -16.73861 -16.34386 -16.05798 -15.68934 -15.49232 -15.21831 -14.93153 -14.83207 -14.79705 -14.76716 -14.54765 -14.06789 -13.86019 -13.56979 -13.45129 -13.10324 -12.91874 -12.78473 -12.66879 -12.63449 -12.45426 -12.28019 -12.10982 -11.99415 -11.80562 -11.75757 -11.31270 -11.03389 -10.95565 -10.70755 -10.59518 -10.39314 -10.09284 -9.79474 -9.56090 -8.81491 -7.90807 -5.14037 -0.19767 0.50693 0.90719 1.44293 1.46138 1.52052 1.86636 1.96092 2.48750 2.58463 3.42248 3.47624 3.73685 3.79893 3.81879 3.87972 4.13673 4.17211 4.21236 4.23891 4.40446 4.42382 4.55662 4.56267 4.60051 4.65723 4.74752 4.81720 4.84016 4.96201 4.96930 5.06563 5.18621 5.24935 5.26303 5.27972 5.31907 5.40673 5.43706 5.48961 5.53765 5.60215 5.79246 5.87838 6.32514 6.75369 6.84707 7.40025 7.59053 8.17188 8.45667 9.31818 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.006933 B = 0.006672 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4037.533943 B = 4195.425569 C = 7362.695599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.114 4.114 8 C 0.192 3.808 9 C 0.132 3.868 10 N -0.723 5.723 11 C -0.235 4.235 12 H 0.056 0.944 13 C -0.065 4.065 14 N -0.960 5.960 15 Si 0.958 3.042 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.283 1.283 19 N -0.702 5.702 20 C 0.509 3.491 21 O -0.540 6.540 22 C -0.062 4.062 23 C -0.195 4.195 24 C 0.030 3.970 25 N -0.496 5.496 26 C 0.012 3.988 27 S 0.116 5.884 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.002 0.998 41 H 0.377 0.623 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.149 0.851 45 H 0.106 0.894 46 H 0.190 0.810 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -5.363 -16.631 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.152 4.152 8 C 0.105 3.895 9 C 0.005 3.995 10 N -0.366 5.366 11 C -0.367 4.367 12 H 0.074 0.926 13 C -0.258 4.258 14 N -0.611 5.611 15 Si 0.789 3.211 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.209 1.209 19 N -0.355 5.355 20 C 0.296 3.704 21 O -0.417 6.417 22 C -0.104 4.104 23 C -0.317 4.317 24 C -0.121 4.121 25 N -0.210 5.210 26 C -0.285 4.285 27 S 0.368 5.632 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.243 0.757 44 H 0.167 0.833 45 H 0.124 0.876 46 H 0.207 0.793 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.763 -4.624 -15.634 16.536 hybrid contribution 0.227 0.125 0.742 0.786 sum -2.536 -4.499 -14.892 15.762 Atomic orbital electron populations 1.22143 0.94875 1.01518 1.00017 1.21432 0.95823 0.99046 0.94408 0.91413 1.21494 0.95845 1.00678 0.95910 1.21528 0.94910 1.00879 0.97787 1.21530 1.00860 0.99391 0.93154 1.21704 0.92638 1.01827 0.99076 1.20362 0.93796 0.81772 0.93526 1.21366 0.98910 0.92925 0.86264 1.42183 1.69515 1.24384 1.00470 1.19408 1.29224 1.02618 0.85471 0.92574 1.25260 1.02414 0.97689 1.00414 1.69748 1.47232 1.15464 1.28700 0.85436 0.77593 0.77219 0.80891 1.21327 1.21641 1.20909 1.45731 1.09372 1.08456 1.71978 1.20479 0.82479 0.91032 0.76439 1.90730 1.56676 1.46406 1.47885 1.20129 0.88625 0.94911 1.06723 1.25451 1.00533 1.11021 0.94715 1.21909 0.85414 1.02722 1.02031 1.66334 1.26647 1.16458 1.11526 1.28785 1.02770 1.03744 0.93202 1.84658 1.01961 1.66141 1.10395 0.93629 0.94493 0.92478 0.91487 0.91389 0.90139 0.92158 0.91015 0.90845 0.91419 0.93027 0.93771 0.98035 0.79020 0.94168 0.75668 0.83345 0.87611 0.79317 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 7.30 71.98 0.53 -3.35 16 2 C -0.09 -2.29 2.07 -10.79 -0.02 -2.31 16 3 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.10 -1.94 5.04 30.59 0.15 -1.78 16 5 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 6 C -0.11 -2.11 5.75 30.59 0.18 -1.93 16 7 C -0.11 -3.16 4.72 30.59 0.14 -3.02 16 8 C 0.19 5.84 0.32 3.60 0.00 5.85 16 9 C 0.13 5.65 4.41 86.38 0.38 6.03 16 10 N -0.72 -36.61 5.04 -343.45 -1.73 -38.34 16 11 C -0.23 -13.56 9.99 84.03 0.84 -12.72 16 12 H 0.06 3.28 7.83 -2.91 -0.02 3.25 16 13 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 14 N -0.96 -57.44 13.06 21.65 0.28 -57.15 16 15 Si 0.96 47.38 29.55 68.60 2.03 49.41 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 19 N -0.70 -19.21 3.53 -422.92 -1.49 -20.71 16 20 C 0.51 15.72 5.97 87.66 0.52 16.24 16 21 O -0.54 -20.84 9.38 -3.01 -0.03 -20.87 16 22 C -0.06 -1.50 6.24 29.11 0.18 -1.31 16 23 C -0.20 -5.46 5.09 24.64 0.13 -5.34 16 24 C 0.03 0.81 11.25 83.66 0.94 1.75 16 25 N -0.50 -14.34 10.54 -203.74 -2.15 -16.48 16 26 C 0.01 0.30 12.23 130.66 1.60 1.90 16 27 S 0.12 3.44 23.22 -56.49 -1.31 2.13 16 28 H 0.04 1.71 5.06 -2.38 -0.01 1.70 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.73 5.49 -2.39 -0.01 1.72 16 31 H 0.07 1.22 7.60 -2.38 -0.02 1.20 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.18 6.63 -2.39 -0.02 1.16 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.05 1.73 7.29 -2.39 -0.02 1.72 16 39 H 0.04 2.12 4.22 -2.38 -0.01 2.11 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.38 19.48 6.58 -92.70 -0.61 18.87 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.41 8.83 6.98 -92.71 -0.65 8.19 16 44 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.19 4.07 8.06 -2.91 -0.02 4.04 16 47 H 0.22 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -72.46 370.98 1.56 -70.90 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.26 Total: 36.11 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.22 Total: -5.00 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.09 Total: -132.68 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.03 Total: -20.87 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.31 Total: 2.13 kcal Total: -72.46 1.56 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.843 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds