Wall clock time and date at job start Tue Mar 31 2020 21:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46770 * 2 1 4 4 C 1.52996 * 109.47612 * 120.00252 * 2 1 3 5 5 C 1.53003 * 109.46989 * 59.99689 * 4 2 1 6 6 C 1.52998 * 109.46864 * 60.00333 * 5 4 2 7 7 C 1.52996 * 109.47328 * 299.99893 * 6 5 4 8 8 C 1.52998 * 109.47024 * 240.00398 * 2 1 3 9 9 C 1.52996 * 109.47328 * 59.99767 * 8 2 1 10 10 N 1.46497 * 109.47503 * 176.13705 * 9 8 2 11 11 C 1.36940 * 120.00429 * 175.02993 * 10 9 8 12 12 H 1.08004 * 119.99842 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00613 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47152 * 60.00426 * 15 13 11 17 17 H 1.48499 * 109.46991 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46848 * 300.00427 * 15 13 11 19 19 N 1.46503 * 109.47288 * 179.97438 * 8 2 1 20 20 C 1.34780 * 119.99853 * 301.89147 * 19 8 2 21 21 O 1.21275 * 119.99933 * 355.44435 * 20 19 8 22 22 C 1.50697 * 119.99705 * 175.44239 * 20 19 8 23 23 C 1.50705 * 109.46723 * 179.97438 * 22 20 19 24 24 C 1.33645 * 126.03512 * 89.72204 * 23 22 20 25 25 N 1.31780 * 114.49765 * 179.78556 * 24 23 22 26 26 C 1.29033 * 117.12389 * 0.51885 * 25 24 23 27 27 S 1.70978 * 110.16846 * 359.71483 * 26 25 24 28 28 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46772 * 299.99341 * 1 2 3 30 30 H 1.08990 * 109.47009 * 59.99928 * 1 2 3 31 31 H 1.08996 * 109.47602 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47233 * 300.00398 * 4 2 1 33 33 H 1.09000 * 109.46896 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47507 * 300.00497 * 5 4 2 35 35 H 1.09005 * 109.47457 * 60.00198 * 6 5 4 36 36 H 1.09005 * 109.47324 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.47048 * 299.99839 * 7 6 5 38 38 H 1.08998 * 109.47666 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47299 * 296.13773 * 9 8 2 40 40 H 1.09001 * 109.47490 * 56.13918 * 9 8 2 41 41 H 0.97000 * 120.00104 * 355.03165 * 10 9 8 42 42 H 0.96994 * 120.00779 * 179.97438 * 14 13 11 43 43 H 0.96998 * 119.99958 * 121.89226 * 19 8 2 44 44 H 1.08995 * 109.47351 * 299.99892 * 22 20 19 45 45 H 1.09006 * 109.46996 * 60.00581 * 22 20 19 46 46 H 1.08000 * 122.74812 * 359.97056 * 24 23 22 47 47 H 1.07997 * 124.91364 * 179.74659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1638 1.2491 6 6 2.0401 -2.8849 -0.0002 7 6 1.5301 -2.1637 -1.2493 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 2.0928 -0.6346 -3.6929 11 6 1.6972 -0.2233 -4.9377 12 1 0.9705 0.5693 -5.0390 13 6 2.2308 -0.8243 -6.0694 14 7 3.1167 -1.7899 -5.9461 15 14 1.6917 -0.2628 -7.7675 16 1 2.0157 1.1762 -7.9391 17 1 2.4032 -1.0574 -8.8007 18 1 0.2272 -0.4612 -7.9126 19 7 3.5050 -0.7207 -1.2496 20 6 4.1785 0.4462 -1.2114 21 8 3.5746 1.4967 -1.2601 22 6 5.6819 0.4453 -1.1080 23 6 6.1845 1.8659 -1.0839 24 6 6.3677 2.6166 0.0065 25 7 6.8218 3.8298 -0.2354 26 6 7.0221 4.1478 -1.4698 27 16 6.6274 2.8328 -2.4887 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.1301 -0.7217 1.2489 32 1 1.6768 -0.2075 2.1392 33 1 1.8932 -2.6775 2.1393 34 1 0.4401 -2.1638 1.2491 35 1 3.1301 -2.8850 -0.0002 36 1 1.6764 -3.9125 -0.0005 37 1 0.4401 -2.1637 -1.2493 38 1 1.8930 -2.6777 -2.1394 39 1 0.4422 -0.0595 -2.5338 40 1 1.8357 1.0458 -2.4646 41 1 2.7456 -1.3462 -3.6020 42 1 3.4894 -2.2102 -6.7369 43 1 3.9903 -1.5601 -1.2774 44 1 5.9829 -0.0626 -0.1918 45 1 6.1049 -0.0748 -1.9676 46 1 6.1633 2.2573 1.0042 47 1 7.3868 5.1057 -1.8100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714186126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:30 Heat of formation + Delta-G solvation = -9.976751 kcal Electronic energy + Delta-G solvation = -28598.703789 eV Core-core repulsion = 24907.258823 eV Total energy + Delta-G solvation = -3691.444966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86141 -40.54540 -39.13729 -36.45385 -34.72976 -33.92090 -33.08701 -32.72909 -30.94191 -28.81595 -27.67365 -26.53914 -25.46474 -24.69035 -23.03915 -22.38496 -21.49088 -20.88846 -19.48431 -19.13318 -18.86266 -18.14946 -17.09027 -16.73352 -16.55543 -16.16597 -16.02945 -15.45810 -15.26743 -15.09938 -14.83195 -14.73887 -14.63407 -14.54701 -13.96018 -13.87095 -13.74764 -13.55381 -13.24406 -13.06439 -12.88251 -12.81766 -12.65018 -12.44136 -12.26604 -12.12851 -12.08401 -11.92664 -11.80807 -11.21917 -11.10825 -11.04377 -10.88513 -10.63064 -10.45939 -10.15136 -9.84578 -9.74471 -8.90523 -7.94049 -5.19056 -0.23397 0.46680 0.85823 1.44314 1.46374 1.52435 1.80356 1.87154 2.41460 2.56118 3.38808 3.44688 3.64258 3.75874 3.85043 3.87098 4.09616 4.14725 4.16556 4.26767 4.38631 4.39270 4.48767 4.52936 4.59029 4.60287 4.72972 4.79871 4.82057 4.88212 4.92061 4.99364 5.16626 5.20483 5.20779 5.22675 5.29448 5.30728 5.43006 5.47379 5.48184 5.55367 5.63331 5.83571 6.29120 6.72506 6.75411 7.36603 7.45715 8.12265 8.41291 9.28626 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007374 B = 0.005506 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.174084 B = 5083.944271 C = 7973.482830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.060 0.940 4 C -0.101 4.101 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.193 3.807 9 C 0.144 3.856 10 N -0.727 5.727 11 C -0.243 4.243 12 H 0.059 0.941 13 C -0.065 4.065 14 N -0.961 5.961 15 Si 0.963 3.037 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.280 1.280 19 N -0.703 5.703 20 C 0.515 3.485 21 O -0.564 6.564 22 C -0.062 4.062 23 C -0.201 4.201 24 C 0.032 3.968 25 N -0.497 5.497 26 C 0.015 3.985 27 S 0.118 5.882 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.010 0.990 41 H 0.378 0.622 42 H 0.251 0.749 43 H 0.408 0.592 44 H 0.152 0.848 45 H 0.112 0.888 46 H 0.189 0.811 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 0.030 17.098 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.078 0.922 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.107 3.893 9 C 0.017 3.983 10 N -0.370 5.370 11 C -0.375 4.375 12 H 0.077 0.923 13 C -0.258 4.258 14 N -0.612 5.612 15 Si 0.793 3.207 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.206 1.206 19 N -0.354 5.354 20 C 0.301 3.699 21 O -0.443 6.443 22 C -0.103 4.103 23 C -0.323 4.323 24 C -0.119 4.119 25 N -0.211 5.211 26 C -0.281 4.281 27 S 0.371 5.629 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.028 0.972 41 H 0.211 0.789 42 H 0.060 0.940 43 H 0.244 0.756 44 H 0.170 0.830 45 H 0.130 0.870 46 H 0.206 0.794 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.031 1.161 16.289 17.087 hybrid contribution -0.151 -0.224 -0.839 0.881 sum 4.880 0.937 15.450 16.229 Atomic orbital electron populations 1.21943 0.94466 1.02567 1.01385 1.21320 0.96345 0.99560 0.94091 0.92162 1.21447 1.00536 0.96007 0.95903 1.21555 1.01157 0.94690 0.97747 1.21525 1.01171 0.99058 0.93150 1.21724 1.01507 0.92979 0.99066 1.20339 0.79470 0.96120 0.93415 1.21169 0.95181 0.95389 0.86593 1.42254 1.50968 1.43298 1.00483 1.19459 1.18551 1.14123 0.85365 0.92306 1.25331 1.00227 0.99531 1.00672 1.69747 1.33958 1.28637 1.28845 0.85373 0.77685 0.77236 0.80447 1.21274 1.21565 1.20636 1.45843 1.06585 1.08503 1.74493 1.20730 0.90152 0.83671 0.75297 1.90658 1.70709 1.32756 1.50158 1.20146 0.91022 0.91374 1.07807 1.25468 1.09773 1.01861 0.95174 1.21924 1.00982 0.88411 1.00608 1.66344 1.15957 1.18068 1.20724 1.28833 1.03666 1.04890 0.90742 1.84449 1.58326 1.07647 1.12497 0.90997 0.91440 0.94403 0.92054 0.91471 0.90330 0.91514 0.91173 0.90723 0.90754 0.92942 0.96359 0.97224 0.78909 0.93993 0.75596 0.83047 0.87028 0.79400 0.75684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.15 71.98 0.59 -3.15 16 2 C -0.09 -2.57 2.01 -10.79 -0.02 -2.59 16 3 H 0.06 2.05 6.19 -2.38 -0.01 2.04 16 4 C -0.10 -2.06 5.29 30.59 0.16 -1.90 16 5 C -0.11 -1.94 5.65 30.59 0.17 -1.76 16 6 C -0.11 -2.15 5.75 30.59 0.18 -1.97 16 7 C -0.11 -3.19 4.36 30.59 0.13 -3.06 16 8 C 0.19 6.03 0.09 3.60 0.00 6.03 16 9 C 0.14 6.25 4.45 86.38 0.38 6.63 16 10 N -0.73 -37.14 5.12 -343.47 -1.76 -38.90 16 11 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 12 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 13 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 14 N -0.96 -57.45 13.06 21.65 0.28 -57.17 16 15 Si 0.96 47.04 29.55 68.60 2.03 49.07 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 17 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 N -0.70 -20.01 3.44 -422.93 -1.46 -21.46 16 20 C 0.52 16.04 7.23 87.66 0.63 16.68 16 21 O -0.56 -22.51 12.30 -3.01 -0.04 -22.55 16 22 C -0.06 -1.42 6.24 29.10 0.18 -1.24 16 23 C -0.20 -5.34 5.09 24.64 0.13 -5.21 16 24 C 0.03 0.82 11.25 83.66 0.94 1.76 16 25 N -0.50 -13.70 10.54 -203.74 -2.15 -15.85 16 26 C 0.02 0.37 12.23 130.65 1.60 1.97 16 27 S 0.12 3.20 23.22 -56.49 -1.31 1.89 16 28 H 0.07 1.64 4.81 -2.39 -0.01 1.63 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.12 6.52 -2.39 -0.02 1.11 16 31 H 0.06 1.22 7.60 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.13 6.43 -2.39 -0.02 1.11 16 35 H 0.07 1.21 6.90 -2.38 -0.02 1.19 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 38 H 0.05 1.76 7.22 -2.39 -0.02 1.74 16 39 H 0.02 0.82 6.64 -2.39 -0.02 0.81 16 40 H 0.01 0.49 6.27 -2.39 -0.01 0.48 16 41 H 0.38 19.55 6.57 -92.71 -0.61 18.94 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.41 9.59 7.39 -92.71 -0.69 8.90 16 44 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 46 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 47 H 0.23 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -74.31 371.92 1.69 -72.62 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.29 Total: 36.64 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.38 Total: -4.29 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.08 Total: -133.37 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.55 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.89 kcal Total: -74.31 1.69 -72.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.642 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds