Wall clock time and date at job start Tue Mar 31 2020 21:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46799 * 2 1 4 4 C 1.53002 * 109.47053 * 120.00339 * 2 1 3 5 5 C 1.53002 * 109.46786 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47503 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46794 * 60.00075 * 6 5 4 8 8 C 1.53000 * 109.46969 * 240.00618 * 2 1 3 9 9 C 1.52997 * 109.47530 * 59.99627 * 8 2 1 10 10 N 1.46502 * 109.46751 * 63.88573 * 9 8 2 11 11 C 1.36939 * 120.00279 * 184.87753 * 10 9 8 12 12 H 1.08006 * 119.99354 * 4.98967 * 11 10 9 13 13 C 1.38808 * 120.00555 * 184.99594 * 11 10 9 14 14 N 1.31618 * 120.00364 * 184.90332 * 13 11 10 15 15 Si 1.86802 * 119.99799 * 4.90040 * 13 11 10 16 16 H 1.48495 * 109.47014 * 94.77127 * 15 13 11 17 17 H 1.48500 * 109.47081 * 214.77205 * 15 13 11 18 18 H 1.48497 * 109.47264 * 334.77181 * 15 13 11 19 19 N 1.46505 * 109.47124 * 299.99607 * 8 2 1 20 20 C 1.34770 * 119.99912 * 176.01646 * 19 8 2 21 21 O 1.21283 * 120.00329 * 5.62689 * 20 19 8 22 22 C 1.50704 * 119.99846 * 185.62669 * 20 19 8 23 23 C 1.50706 * 109.46931 * 185.07080 * 22 20 19 24 24 C 1.33641 * 126.03600 * 85.06540 * 23 22 20 25 25 N 1.31778 * 114.49691 * 180.27054 * 24 23 22 26 26 C 1.29028 * 117.12768 * 359.47456 * 25 24 23 27 27 S 1.70985 * 110.16354 * 0.50255 * 26 25 24 28 28 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47017 * 299.99148 * 1 2 3 30 30 H 1.09003 * 109.47086 * 59.99550 * 1 2 3 31 31 H 1.09003 * 109.47079 * 60.00062 * 4 2 1 32 32 H 1.08999 * 109.46941 * 299.99915 * 4 2 1 33 33 H 1.09003 * 109.46819 * 180.02562 * 5 4 2 34 34 H 1.09006 * 109.46759 * 60.00553 * 5 4 2 35 35 H 1.09003 * 109.47043 * 300.00233 * 6 5 4 36 36 H 1.09000 * 109.47296 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.46997 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47626 * 60.00014 * 7 6 5 39 39 H 1.08995 * 109.47710 * 183.88369 * 9 8 2 40 40 H 1.09005 * 109.47088 * 303.88991 * 9 8 2 41 41 H 0.97001 * 120.00431 * 4.87258 * 10 9 8 42 42 H 0.96994 * 120.00246 * 179.97438 * 14 13 11 43 43 H 0.97004 * 119.99502 * 356.01748 * 19 8 2 44 44 H 1.08992 * 109.47152 * 65.07278 * 22 20 19 45 45 H 1.08999 * 109.46746 * 305.06520 * 22 20 19 46 46 H 1.07995 * 122.75040 * 359.97438 * 24 23 22 47 47 H 1.07998 * 124.92218 * 180.22974 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7219 1.2488 6 6 4.0796 -1.4433 -0.0004 7 6 3.5696 -0.7220 -1.2496 8 6 2.0400 -0.7211 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 2.0933 1.3517 -2.5461 11 6 1.6992 2.2236 -3.5258 12 1 0.9153 1.9440 -4.2141 13 6 2.3074 3.4667 -3.6343 14 7 1.8646 4.3416 -4.5123 15 14 3.7542 3.8978 -2.5342 16 1 5.0231 3.6037 -3.2473 17 1 3.7023 5.3418 -2.1913 18 1 3.6874 3.0908 -1.2895 19 7 1.5518 -2.1024 -1.2494 20 6 1.8098 -2.9082 -2.2984 21 8 2.5310 -2.5246 -3.1949 22 6 1.2022 -4.2861 -2.3574 23 6 1.7418 -5.0221 -3.5567 24 6 2.8839 -5.7144 -3.6060 25 7 3.1390 -6.2650 -4.7757 26 6 2.2707 -6.0845 -5.7129 27 16 0.9783 -5.1218 -5.1415 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -1.7490 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 3.9334 -1.2362 2.1386 34 1 3.9337 0.3058 1.2487 35 1 3.7159 -2.4709 -0.0003 36 1 5.1696 -1.4433 -0.0009 37 1 3.9322 -1.2362 -2.1396 38 1 3.9332 0.3055 -1.2498 39 1 1.8353 -0.5522 -3.3872 40 1 0.4422 0.0609 -2.4643 41 1 2.7453 1.6291 -1.8837 42 1 2.2893 5.2103 -4.5879 43 1 1.0427 -2.4369 -0.4944 44 1 0.1186 -4.2021 -2.4400 45 1 1.4562 -4.8343 -1.4502 46 1 3.5459 -5.8104 -2.7582 47 1 2.3509 -6.4802 -6.7146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714186127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:32 Heat of formation + Delta-G solvation = -7.149735 kcal Electronic energy + Delta-G solvation = -28445.144171 eV Core-core repulsion = 24753.821793 eV Total energy + Delta-G solvation = -3691.322377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92572 -40.55411 -39.20625 -36.50941 -34.84613 -33.96315 -33.47691 -33.30262 -30.97540 -28.64573 -27.91026 -26.57409 -25.58990 -24.42460 -23.01223 -21.98743 -21.87799 -20.90326 -19.81047 -19.78863 -19.04079 -18.30445 -16.98732 -16.58893 -16.46604 -16.08998 -15.85528 -15.63840 -15.32344 -15.18427 -15.05874 -14.99406 -14.82027 -14.72092 -14.32411 -13.95459 -13.66585 -13.46814 -13.29472 -13.22200 -12.96935 -12.84204 -12.74744 -12.53504 -12.33064 -12.11314 -12.07873 -11.87493 -11.81372 -11.41272 -11.21512 -11.12816 -10.93159 -10.62101 -10.52908 -10.15456 -9.90304 -9.82477 -9.25373 -8.06089 -5.37833 -0.23598 0.47694 0.82931 1.28411 1.35964 1.41133 1.72904 1.85772 2.31351 2.43204 3.25003 3.45492 3.56972 3.74253 3.74293 3.78924 3.80447 4.07687 4.15876 4.18189 4.21916 4.39218 4.45226 4.50521 4.52925 4.58425 4.62483 4.72439 4.80692 4.88366 4.94807 4.97973 5.09605 5.13406 5.19398 5.21547 5.22640 5.31025 5.34994 5.43968 5.51902 5.55771 5.68966 5.73624 6.18111 6.70629 6.76218 7.05107 7.41743 7.81160 8.02039 9.16042 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003963 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.405272 B = 7062.926913 C = 8355.466749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.057 0.943 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.127 4.127 8 C 0.194 3.806 9 C 0.146 3.854 10 N -0.748 5.748 11 C -0.230 4.230 12 H 0.049 0.951 13 C -0.060 4.060 14 N -0.982 5.982 15 Si 0.951 3.049 16 H -0.287 1.287 17 H -0.288 1.288 18 H -0.250 1.250 19 N -0.698 5.698 20 C 0.506 3.494 21 O -0.565 6.565 22 C -0.056 4.056 23 C -0.205 4.205 24 C 0.027 3.973 25 N -0.504 5.504 26 C 0.010 3.990 27 S 0.137 5.863 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.018 0.982 40 H 0.027 0.973 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.417 0.583 44 H 0.131 0.869 45 H 0.154 0.846 46 H 0.184 0.816 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 -24.041 14.351 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.076 0.924 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.143 4.143 7 C -0.166 4.166 8 C 0.107 3.893 9 C 0.019 3.981 10 N -0.395 5.395 11 C -0.361 4.361 12 H 0.067 0.933 13 C -0.251 4.251 14 N -0.633 5.633 15 Si 0.779 3.221 16 H -0.214 1.214 17 H -0.214 1.214 18 H -0.175 1.175 19 N -0.353 5.353 20 C 0.293 3.707 21 O -0.443 6.443 22 C -0.098 4.098 23 C -0.326 4.326 24 C -0.124 4.124 25 N -0.218 5.218 26 C -0.287 4.287 27 S 0.390 5.610 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.257 0.743 44 H 0.149 0.851 45 H 0.171 0.829 46 H 0.200 0.800 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.266 -23.681 12.923 27.175 hybrid contribution 1.368 0.996 0.390 1.737 sum -1.898 -22.685 13.313 26.371 Atomic orbital electron populations 1.21838 0.93754 1.02822 1.01707 1.21334 0.97007 0.99071 0.93547 0.92423 1.21598 0.94992 1.01456 0.96137 1.21580 0.96204 1.00229 0.97748 1.21439 0.99880 0.99707 0.93294 1.21845 0.95140 0.99999 0.99623 1.20093 0.93129 0.81568 0.94509 1.21107 0.95770 0.84432 0.96753 1.42661 1.52163 1.11155 1.33545 1.18974 1.14401 0.95362 1.07333 0.93263 1.25439 1.02467 0.96472 1.00736 1.69879 1.45166 1.07718 1.40550 0.85458 0.79843 0.77237 0.79572 1.21376 1.21374 1.17509 1.45777 1.57048 1.10865 1.21600 1.21072 0.80609 0.87536 0.81504 1.90764 1.38154 1.76033 1.39364 1.20180 1.02697 0.90499 0.96411 1.25575 1.00962 1.06641 0.99471 1.21909 0.96249 0.98091 0.96158 1.66311 1.30501 1.23774 1.01169 1.28812 0.93874 1.01726 1.04247 1.84048 1.25398 1.46641 1.04931 0.90240 0.91233 0.94711 0.89408 0.90142 0.89591 0.93516 0.90583 0.92500 0.92786 0.93998 0.96425 0.95509 0.79804 0.93278 0.74334 0.85092 0.82852 0.79959 0.76052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.67 71.98 0.62 -2.53 16 2 C -0.09 -2.22 1.87 -10.79 -0.02 -2.24 16 3 H 0.06 1.81 7.21 -2.39 -0.02 1.79 16 4 C -0.10 -1.67 5.03 30.60 0.15 -1.52 16 5 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 6 C -0.11 -2.34 5.77 30.59 0.18 -2.16 16 7 C -0.13 -4.05 4.36 30.58 0.13 -3.92 16 8 C 0.19 5.63 0.11 3.59 0.00 5.63 16 9 C 0.15 6.10 4.83 86.38 0.42 6.51 16 10 N -0.75 -37.18 4.79 -343.45 -1.64 -38.82 16 11 C -0.23 -13.89 10.47 84.03 0.88 -13.01 16 12 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 13 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 14 N -0.98 -65.11 13.97 21.65 0.30 -64.81 16 15 Si 0.95 47.58 28.02 68.60 1.92 49.50 16 16 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 17 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 18 H -0.25 -11.15 6.14 99.48 0.61 -10.54 16 19 N -0.70 -14.12 3.73 -422.99 -1.58 -15.70 16 20 C 0.51 12.02 7.21 87.66 0.63 12.65 16 21 O -0.57 -20.25 12.26 -3.04 -0.04 -20.29 16 22 C -0.06 -0.79 6.24 29.10 0.18 -0.61 16 23 C -0.20 -4.15 5.10 24.64 0.13 -4.02 16 24 C 0.03 0.60 11.25 83.66 0.94 1.54 16 25 N -0.50 -12.59 10.54 -203.74 -2.15 -14.74 16 26 C 0.01 0.20 12.23 130.65 1.60 1.80 16 27 S 0.14 2.75 23.22 -56.49 -1.31 1.44 16 28 H 0.08 1.20 6.94 -2.39 -0.02 1.19 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.02 6.34 -2.39 -0.02 1.01 16 31 H 0.09 0.91 6.78 -2.39 -0.02 0.89 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.41 7.60 -2.39 -0.02 1.40 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 2.05 6.27 -2.39 -0.01 2.04 16 38 H 0.04 1.54 6.55 -2.39 -0.02 1.52 16 39 H 0.02 0.86 5.97 -2.39 -0.01 0.85 16 40 H 0.03 1.13 6.23 -2.38 -0.01 1.12 16 41 H 0.37 17.42 3.12 -92.71 -0.29 17.13 16 42 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 43 H 0.42 4.79 6.18 -92.71 -0.57 4.22 16 44 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 47 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -84.24 370.12 2.04 -82.20 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.04 Total: 28.30 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 6.49 Total: -7.08 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.07 Total: -134.07 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.04 Total: -20.29 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.92 Total: 49.50 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -84.24 2.04 -82.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.054 kcal (2) G-P(sol) polarization free energy of solvation -84.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds