Wall clock time and date at job start Tue Mar 31 2020 19:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 N 1.46497 * 109.47067 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99906 * 264.11736 * 4 3 2 6 6 H 1.07995 * 120.00047 * 188.01080 * 5 4 3 7 7 C 1.38819 * 119.99747 * 8.01653 * 5 4 3 8 8 N 1.31620 * 120.00291 * 25.64817 * 7 5 4 9 9 Si 1.86802 * 119.99560 * 205.64722 * 7 5 4 10 10 H 1.48497 * 109.47261 * 84.98800 * 9 7 5 11 11 H 1.48506 * 109.46720 * 204.98997 * 9 7 5 12 12 H 1.48498 * 109.47027 * 324.98523 * 9 7 5 13 13 C 1.46497 * 120.00186 * 84.11846 * 4 3 2 14 14 C 1.53001 * 109.46943 * 270.00045 * 13 4 3 15 15 N 1.46497 * 109.46943 * 179.97438 * 14 13 4 16 16 C 1.34784 * 120.00055 * 180.02562 * 15 14 13 17 17 O 1.21684 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.46683 * 120.00039 * 180.02562 * 16 15 14 19 19 S 1.76213 * 126.13045 * 359.96889 * 18 16 15 20 20 C 1.70950 * 90.31374 * 180.02562 * 19 18 16 21 21 C 1.50701 * 124.80202 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49672 * 239.99818 * 21 20 19 23 23 C 1.52994 * 60.03552 * 252.50377 * 22 21 20 24 24 N 1.29435 * 110.39095 * 0.26891 * 20 19 18 25 25 C 1.30936 * 117.36076 * 359.49949 * 24 20 19 26 26 C 1.50701 * 122.90328 * 180.24942 * 25 24 20 27 27 H 1.09005 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47209 * 299.99296 * 1 2 3 29 29 H 1.09000 * 109.47252 * 59.99786 * 1 2 3 30 30 H 1.09002 * 109.46747 * 240.00465 * 2 1 3 31 31 H 1.08998 * 109.47594 * 120.00629 * 2 1 3 32 32 H 1.09000 * 109.46609 * 60.00336 * 3 2 1 33 33 H 1.08998 * 109.47504 * 300.00684 * 3 2 1 34 34 H 0.96994 * 119.99772 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47048 * 149.99735 * 13 4 3 36 36 H 1.08994 * 109.46937 * 29.99941 * 13 4 3 37 37 H 1.08998 * 109.47501 * 59.99968 * 14 13 4 38 38 H 1.09003 * 109.47342 * 299.99846 * 14 13 4 39 39 H 0.97001 * 120.00625 * 359.97438 * 15 14 13 40 40 H 1.08992 * 115.55595 * 25.67444 * 21 20 19 41 41 H 1.09001 * 117.50416 * 0.02562 * 22 21 20 42 42 H 1.09006 * 117.49401 * 145.00079 * 22 21 20 43 43 H 1.09002 * 117.50237 * 107.50363 * 23 22 21 44 44 H 1.09000 * 117.50302 * 252.52784 * 23 22 21 45 45 H 1.09000 * 109.47587 * 270.29324 * 26 25 24 46 46 H 1.09000 * 109.46952 * 30.29205 * 26 25 24 47 47 H 1.09005 * 109.47145 * 150.29111 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5640 1.1788 6 1 5.2622 1.6941 1.1696 7 6 3.5067 1.5196 2.3863 8 7 2.3565 0.8849 2.4686 9 14 4.2194 2.3607 3.8943 10 1 3.8325 3.7944 3.8907 11 1 3.6923 1.7087 5.1201 12 1 5.6998 2.2474 3.8709 13 6 4.2370 1.3128 -1.2629 14 6 4.4919 -0.1673 -1.5548 15 7 5.2233 -0.2972 -2.8174 16 6 5.5596 -1.5180 -3.2790 17 8 5.2560 -2.5124 -2.6467 18 6 6.2925 -1.6480 -4.5429 19 16 6.8115 -0.3243 -5.5839 20 6 7.5035 -1.4423 -6.6764 21 6 8.2129 -1.0708 -7.9530 22 6 7.6395 -1.6137 -9.2635 23 6 8.9444 -2.1853 -8.7055 24 7 7.3265 -2.6532 -6.2550 25 6 6.6917 -2.8088 -5.1204 26 6 6.4221 -4.1609 -4.5119 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9565 -0.8899 34 1 1.8789 0.8543 3.3122 35 1 5.1893 1.8373 -1.1862 36 1 3.6476 1.7462 -2.0709 37 1 3.5395 -0.6919 -1.6315 38 1 5.0813 -0.6008 -0.7468 39 1 5.4650 0.4954 -3.3217 40 1 8.6565 -0.0754 -7.9719 41 1 6.7489 -2.2391 -9.2024 42 1 7.7059 -0.9752 -10.1445 43 1 8.9125 -3.1871 -8.2772 44 1 9.8692 -1.9227 -9.2191 45 1 5.4668 -4.5392 -4.8756 46 1 7.2173 -4.8512 -4.7937 47 1 6.3875 -4.0703 -3.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714654707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:14 Heat of formation + Delta-G solvation = 53.318083 kcal Electronic energy + Delta-G solvation = -26414.859618 eV Core-core repulsion = 22726.159322 eV Total energy + Delta-G solvation = -3688.700296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53821 -39.16006 -37.31073 -36.56560 -34.48220 -31.96612 -31.80704 -31.39777 -29.06135 -27.27800 -26.27324 -25.52071 -23.64955 -22.81208 -21.89829 -21.35913 -20.85822 -19.99184 -19.22527 -18.10340 -16.94042 -16.69473 -16.40738 -15.65137 -15.37616 -14.89241 -14.77884 -14.51801 -13.97214 -13.81731 -13.74921 -13.53648 -12.97878 -12.86624 -12.77038 -12.64702 -12.39929 -12.28920 -11.92370 -11.61618 -11.48759 -11.33510 -11.13886 -11.06347 -11.04765 -10.86930 -10.63512 -10.41148 -10.07605 -9.99049 -9.92798 -9.83910 -9.66221 -9.63711 -9.24714 -8.89386 -8.63240 -8.36028 -6.96072 -5.80032 -3.11783 0.06621 0.93922 1.38585 2.25907 3.22882 3.27285 3.38937 3.41130 3.46977 3.47533 3.69092 4.31305 4.38613 4.49031 4.53354 4.82866 4.88052 5.01924 5.22615 5.29446 5.35235 5.50033 5.55760 5.61675 5.69732 5.76336 5.78246 5.79817 5.87787 6.16752 6.21212 6.26012 6.27534 6.52420 6.60747 6.64119 6.67441 6.82391 6.98398 7.18051 7.26461 7.41490 7.64917 7.65568 7.77697 8.09577 8.29064 8.33661 9.19945 9.81383 10.25625 11.23298 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002334 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.049074 B =11993.292852 C =12334.673801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.090 3.910 15 N -0.718 5.718 16 C 0.589 3.411 17 O -0.523 6.523 18 C -0.294 4.294 19 S 0.165 5.835 20 C 0.089 3.911 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.147 4.147 24 N -0.478 5.478 25 C 0.147 3.853 26 C -0.089 4.089 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.021 0.979 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -2.585 -21.982 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.310 5.310 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.035 4.035 15 N -0.368 5.368 16 C 0.374 3.626 17 O -0.401 6.401 18 C -0.418 4.418 19 S 0.425 5.575 20 C -0.186 4.186 21 C -0.124 4.124 22 C -0.192 4.192 23 C -0.186 4.186 24 N -0.193 5.193 25 C 0.010 3.990 26 C -0.148 4.148 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.225 0.775 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.779 -2.536 -21.569 23.424 hybrid contribution 0.289 -0.094 0.918 0.967 sum 9.068 -2.630 -20.651 22.707 Atomic orbital electron populations 1.21627 0.98549 0.99337 1.00003 1.22230 0.92942 1.00467 1.01387 1.20939 0.81479 0.94550 0.98447 1.44245 1.01927 1.83538 1.01337 1.19263 0.92248 1.43607 0.83452 0.90755 1.24730 0.97577 1.00042 0.97300 1.70161 1.17186 1.41088 1.25016 0.86371 0.78421 0.79887 0.82580 1.21578 1.21951 1.20771 1.20955 0.96464 0.91575 0.89599 1.22838 0.95955 1.01981 0.82736 1.46136 1.58187 1.06744 1.25760 1.16719 0.78939 0.84309 0.82683 1.90795 1.54563 1.36738 1.58012 1.25641 1.15529 0.96411 1.04209 1.83781 1.49035 1.10702 1.14026 1.26289 1.00700 0.91348 1.00229 1.20590 1.04608 1.00209 0.87040 1.23068 0.98540 1.03175 0.94450 1.23042 0.95899 0.98323 1.01386 1.65963 1.17649 1.21902 1.13738 1.20626 0.92798 0.96735 0.88888 1.20665 1.02136 0.89263 1.02709 0.94797 0.92972 0.95095 0.96059 0.88311 0.89159 0.97852 0.93681 0.93150 0.93858 0.91234 0.91126 0.77502 0.85200 0.88190 0.87657 0.87260 0.87903 0.90154 0.90918 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 37.16 0.37 -2.28 16 2 C -0.13 -2.94 5.61 -26.73 -0.15 -3.09 16 3 C 0.17 3.97 4.92 -4.04 -0.02 3.95 16 4 N -0.59 -13.97 2.54 -173.24 -0.44 -14.40 16 5 C -0.26 -6.71 9.70 -15.05 -0.15 -6.86 16 6 H 0.07 1.92 7.94 -52.49 -0.42 1.51 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.12 8.62 55.49 0.48 -23.64 16 9 Si 0.90 21.20 29.62 -169.99 -5.04 16.16 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.14 2.74 5.82 -4.04 -0.02 2.72 16 14 C 0.09 1.71 5.88 -4.04 -0.02 1.69 16 15 N -0.72 -11.24 5.55 -61.62 -0.34 -11.58 16 16 C 0.59 9.81 7.78 -12.85 -0.10 9.71 16 17 O -0.52 -10.33 14.27 5.20 0.07 -10.25 16 18 C -0.29 -4.11 6.48 -37.10 -0.24 -4.35 16 19 S 0.17 1.71 22.31 -107.50 -2.40 -0.69 16 20 C 0.09 0.94 6.96 -13.29 -0.09 0.85 16 21 C -0.10 -0.75 6.29 -91.73 -0.58 -1.33 16 22 C -0.15 -0.94 10.23 -26.73 -0.27 -1.22 16 23 C -0.15 -0.96 10.12 -26.69 -0.27 -1.23 16 24 N -0.48 -5.99 9.97 -7.70 -0.08 -6.07 16 25 C 0.15 2.01 6.79 -83.90 -0.57 1.45 16 26 C -0.09 -1.13 9.70 36.01 0.35 -0.78 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.46 5.97 -51.93 -0.31 0.15 16 31 H 0.10 2.57 6.33 -51.93 -0.33 2.25 16 32 H 0.09 2.34 5.85 -51.93 -0.30 2.03 16 33 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 34 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 37 H 0.07 1.45 5.92 -51.93 -0.31 1.14 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.39 5.02 7.66 -40.82 -0.31 4.71 16 40 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.11 0.88 7.84 -51.93 -0.41 0.47 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 1.48 6.01 -51.93 -0.31 1.17 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -29.82 392.48 -10.98 -40.80 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.31 Total: 4.57 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.85 Total: -0.82 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.38 Total: -55.69 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.04 Total: 16.16 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.82 -10.98 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714654707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.122 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds