Wall clock time and date at job start Tue Mar 31 2020 19:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21692 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.46681 * 120.00211 * 180.02562 * 7 6 5 10 10 S 1.76217 * 126.13098 * 0.02562 * 9 7 6 11 11 C 1.70951 * 90.31467 * 180.02562 * 10 9 7 12 12 N 1.29428 * 110.39310 * 0.02562 * 11 10 9 13 13 C 1.30951 * 117.36215 * 359.70955 * 12 11 10 14 14 C 1.50698 * 122.90400 * 180.34925 * 13 12 11 15 15 C 1.54272 * 110.03545 * 57.35797 * 14 13 12 16 16 C 1.54882 * 104.19546 * 217.10530 * 15 14 13 17 17 C 1.54888 * 102.75079 * 37.94331 * 16 15 14 18 18 C 1.53873 * 110.03163 * 300.19193 * 14 13 12 19 19 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 29 29 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 30 30 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 32 32 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 33 33 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 34 34 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 35 35 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 36 36 H 1.07996 * 124.80324 * 179.97438 * 11 10 9 37 37 H 1.08997 * 110.01808 * 178.80027 * 14 13 12 38 38 H 1.09003 * 110.47992 * 335.78595 * 15 14 13 39 39 H 1.09004 * 110.48567 * 98.42437 * 15 14 13 40 40 H 1.09001 * 110.75764 * 279.62287 * 16 15 14 41 41 H 1.08999 * 110.75422 * 156.25473 * 16 15 14 42 42 H 1.09000 * 110.48803 * 203.38265 * 17 16 15 43 43 H 1.08997 * 110.60518 * 80.79179 * 17 16 15 44 44 H 1.09002 * 110.03219 * 238.57255 * 18 14 13 45 45 H 1.09005 * 110.03351 * 359.95024 * 18 14 13 46 46 H 0.97000 * 119.99792 * 94.99575 * 19 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1660 2.1454 -0.2591 9 6 5.8844 4.4372 0.0337 10 16 4.9046 5.8800 0.2859 11 6 6.3132 6.8487 0.2818 12 7 7.3648 6.1148 0.1065 13 6 7.1833 4.8246 -0.0248 14 6 8.3187 3.8546 -0.2265 15 6 9.3250 3.9693 0.9371 16 6 10.7069 3.7768 0.2646 17 6 10.5380 4.5215 -1.0829 18 6 9.0900 4.2056 -1.5109 19 7 1.6525 2.0974 1.2520 20 6 0.4157 2.6733 1.3691 21 1 -0.2743 2.6445 0.5387 22 6 0.0465 3.2888 2.5573 23 7 0.8871 3.3235 3.5694 24 14 -1.6436 4.0677 2.7197 25 1 -2.3925 3.8949 1.4490 26 1 -2.3866 3.4122 3.8258 27 1 -1.4951 5.5158 3.0132 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0379 -1.0962 35 1 3.4410 3.5483 0.1316 36 1 6.3239 7.9214 0.4069 37 1 7.9333 2.8369 -0.2888 38 1 9.2605 4.9534 1.4015 39 1 9.1469 3.1862 1.6741 40 1 10.9116 2.7191 0.0985 41 1 11.4947 4.2345 0.8628 42 1 11.2452 4.1413 -1.8202 43 1 10.6701 5.5949 -0.9471 44 1 9.0796 3.3580 -2.1962 45 1 8.6425 5.0772 -1.9888 46 1 2.2721 2.1229 1.9979 47 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715064238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:50 Heat of formation + Delta-G solvation = -17.249474 kcal Electronic energy + Delta-G solvation = -27167.250342 eV Core-core repulsion = 23475.490007 eV Total energy + Delta-G solvation = -3691.760335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68635 -40.30417 -38.32767 -38.23782 -35.33257 -34.16876 -32.40080 -31.51156 -30.21120 -29.58843 -28.77517 -26.46544 -25.59415 -24.26541 -22.51414 -21.86561 -21.61777 -21.47682 -20.42884 -19.19878 -18.88378 -17.94968 -17.10266 -17.01318 -16.65809 -16.30788 -15.96400 -15.85845 -15.68768 -15.19234 -15.15918 -14.80242 -14.58206 -14.22710 -14.20880 -14.08518 -13.77204 -13.30850 -12.99574 -12.81665 -12.78101 -12.44422 -12.35742 -12.08313 -11.98889 -11.95980 -11.90878 -11.81358 -11.77796 -11.61678 -11.43971 -11.32884 -11.00085 -10.91198 -10.64297 -10.57976 -10.12718 -9.83129 -8.97698 -7.86651 -5.14077 -0.77835 0.20034 0.59919 1.37946 1.49587 1.52410 1.59689 2.04010 2.13118 2.60279 3.11643 3.47146 3.68612 3.72192 3.78377 3.85610 3.91232 3.96706 4.16501 4.30958 4.36608 4.47075 4.54534 4.56136 4.64220 4.65413 4.73378 4.75802 4.85095 4.86871 4.94564 5.06963 5.08751 5.08969 5.12289 5.20662 5.26732 5.30309 5.36029 5.49280 5.53820 5.58315 5.62646 5.73077 6.33079 6.36809 6.57874 7.03695 7.41175 8.11686 8.37039 9.36218 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.003150 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.919300 B = 8885.490740 C =10122.937838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.705 5.705 7 C 0.592 3.408 8 O -0.557 6.557 9 C -0.327 4.327 10 S 0.188 5.812 11 C 0.047 3.953 12 N -0.486 5.486 13 C 0.153 3.847 14 C -0.051 4.051 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.104 4.104 19 N -0.729 5.729 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.957 3.043 25 H -0.266 1.266 26 H -0.304 1.304 27 H -0.297 1.297 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.406 0.594 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.191 4.557 -10.640 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.355 5.355 7 C 0.379 3.621 8 O -0.439 6.439 9 C -0.451 4.451 10 S 0.444 5.556 11 C -0.248 4.248 12 N -0.200 5.200 13 C 0.013 3.987 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.143 4.143 19 N -0.369 5.369 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.788 3.212 25 H -0.190 1.190 26 H -0.232 1.232 27 H -0.225 1.225 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.262 0.738 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.204 0.796 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.893 4.513 -10.729 18.124 hybrid contribution -0.766 0.248 0.953 1.247 sum 13.127 4.761 -9.777 17.046 Atomic orbital electron populations 1.21698 0.95916 1.00620 1.01816 1.21977 0.96673 0.97106 1.01160 1.20732 0.90654 0.93531 0.89573 0.92287 1.21685 0.94629 0.81898 1.02011 1.45902 1.06359 1.11231 1.72050 1.16909 0.82459 0.86440 0.76320 1.90645 1.55736 1.45369 1.52169 1.25498 0.98457 0.98896 1.22248 1.84421 1.11716 0.96454 1.62971 1.29478 0.89793 1.06653 0.98854 1.66093 1.32369 1.04106 1.17411 1.20791 0.92815 0.90694 0.94354 1.21080 0.91428 0.97606 0.97101 1.22357 0.94795 1.01351 0.96365 1.22466 0.95752 1.00925 0.96258 1.22301 0.95110 1.00560 0.97156 1.22068 0.95896 1.00827 0.95464 1.42598 1.15897 1.66139 1.12297 1.19514 0.92335 1.25417 0.97398 0.90167 1.25350 1.00824 1.03511 0.96616 1.69813 1.36636 1.51068 1.04205 0.85312 0.81059 0.77488 0.77375 1.19046 1.23157 1.22458 0.93250 0.93191 0.92836 0.90527 0.93523 0.92545 0.89561 0.75740 0.73770 0.87584 0.91788 0.92462 0.90940 0.90202 0.90210 0.91464 0.91473 0.92673 0.79625 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.18 71.98 0.66 -4.04 16 2 C -0.13 -4.08 5.61 30.59 0.17 -3.90 16 3 C 0.16 5.72 2.59 44.99 0.12 5.84 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.97 5.23 86.38 0.45 4.42 16 6 N -0.71 -23.92 5.38 -467.09 -2.51 -26.43 16 7 C 0.59 20.62 7.78 86.45 0.67 21.30 16 8 O -0.56 -21.26 14.00 -4.32 -0.06 -21.32 16 9 C -0.33 -10.12 6.48 23.88 0.15 -9.96 16 10 S 0.19 4.66 22.35 -56.49 -1.26 3.40 16 11 C 0.05 0.95 12.22 130.60 1.60 2.54 16 12 N -0.49 -12.41 9.98 -190.40 -1.90 -14.31 16 13 C 0.15 4.44 5.14 42.09 0.22 4.65 16 14 C -0.05 -1.41 3.19 -10.81 -0.03 -1.45 16 15 C -0.11 -2.69 6.34 31.67 0.20 -2.49 16 16 C -0.12 -2.17 6.91 31.88 0.22 -1.95 16 17 C -0.11 -2.07 6.83 31.67 0.22 -1.86 16 18 C -0.10 -2.40 6.42 31.32 0.20 -2.19 16 19 N -0.73 -32.50 4.51 -322.93 -1.46 -33.95 16 20 C -0.21 -10.58 7.75 84.04 0.65 -9.92 16 21 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 23 N -0.97 -55.75 13.06 21.65 0.28 -55.46 16 24 Si 0.96 43.66 29.55 68.60 2.03 45.69 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 28 H 0.05 1.98 5.99 -2.38 -0.01 1.97 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.41 14.14 7.32 -92.71 -0.68 13.46 16 36 H 0.25 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.11 3.44 4.96 -2.39 -0.01 3.42 16 38 H 0.06 1.62 7.54 -2.39 -0.02 1.60 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.33 7.60 -2.38 -0.02 1.31 16 46 H 0.37 18.62 7.80 -92.71 -0.72 17.89 16 47 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -62.55 388.03 0.67 -61.89 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -0.41 Total: 42.83 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.96 Total: -2.31 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.59 Total: -130.16 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.32 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.26 Total: 3.40 kcal Total: -62.55 0.67 -61.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715064238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.636 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds