Wall clock time and date at job start Tue Mar 31 2020 19:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09008 * 109.47230 * 54.99524 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99496 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34769 * 119.99943 * 180.02562 * 6 5 3 8 8 O 1.21685 * 120.00205 * 359.97438 * 7 6 5 9 9 C 1.46689 * 120.00160 * 180.02562 * 7 6 5 10 10 S 1.76212 * 126.12796 * 0.02562 * 9 7 6 11 11 C 1.70953 * 90.31171 * 180.02562 * 10 9 7 12 12 N 1.29420 * 110.39434 * 0.02562 * 11 10 9 13 13 C 1.30943 * 117.36253 * 359.70987 * 12 11 10 14 14 C 1.50702 * 122.90592 * 180.34512 * 13 12 11 15 15 C 1.54263 * 110.03248 * 57.35863 * 14 13 12 16 16 C 1.54895 * 104.19514 * 217.10525 * 15 14 13 17 17 C 1.54882 * 102.74833 * 37.94189 * 16 15 14 18 18 C 1.53875 * 110.03224 * 300.18998 * 14 13 12 19 19 N 1.46493 * 109.47225 * 294.99845 * 3 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09001 * 109.46624 * 59.99941 * 1 2 3 29 29 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47495 * 300.00437 * 1 2 3 31 31 H 1.08997 * 109.47495 * 239.99562 * 2 1 3 32 32 H 1.09001 * 109.46831 * 119.99547 * 2 1 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 34 34 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 35 35 H 0.97003 * 120.00245 * 0.02562 * 6 5 3 36 36 H 1.08008 * 124.80107 * 179.97438 * 11 10 9 37 37 H 1.09001 * 110.01550 * 178.80067 * 14 13 12 38 38 H 1.08995 * 110.48672 * 335.78011 * 15 14 13 39 39 H 1.09005 * 110.48813 * 98.43068 * 15 14 13 40 40 H 1.09006 * 110.75446 * 279.62682 * 16 15 14 41 41 H 1.08999 * 110.75504 * 156.25522 * 16 15 14 42 42 H 1.09003 * 110.49153 * 203.38261 * 17 16 15 43 43 H 1.09002 * 110.60429 * 80.79186 * 17 16 15 44 44 H 1.09003 * 110.03433 * 238.56981 * 18 14 13 45 45 H 1.08996 * 110.03669 * 359.95077 * 18 14 13 46 46 H 0.97000 * 120.00040 * 264.99759 * 19 3 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5649 1.4443 0.1259 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0629 0.0861 8 8 6.1661 2.1452 0.2582 9 6 5.8846 4.4372 -0.0333 10 16 4.9044 5.8803 -0.2815 11 6 6.3132 6.8487 -0.2800 12 7 7.3651 6.1144 -0.1092 13 6 7.1828 4.8254 0.0320 14 6 8.3173 3.8566 0.2452 15 6 9.1238 4.2548 1.4984 16 6 10.5926 3.9391 1.1211 17 6 10.6583 4.3508 -0.3706 18 6 9.2929 3.9176 -0.9432 19 7 1.6525 2.0974 -1.2518 20 6 0.4157 2.6734 -1.3689 21 1 -0.2740 2.6452 -0.5383 22 6 0.0485 3.2936 -2.5552 23 7 -1.1424 3.8425 -2.6696 24 14 1.2410 3.3418 -3.9922 25 1 2.0724 4.5692 -3.9044 26 1 2.1190 2.1450 -3.9472 27 1 0.4798 3.3496 -5.2672 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0377 1.0962 34 1 3.9955 0.8311 -0.6658 35 1 3.4410 3.5484 -0.1307 36 1 6.3240 7.9215 -0.4047 37 1 7.9278 2.8447 0.3569 38 1 9.0038 5.3178 1.7074 39 1 8.8140 3.6588 2.3569 40 1 10.8013 2.8756 1.2379 41 1 11.2817 4.5369 1.7175 42 1 11.4681 3.8248 -0.8763 43 1 10.7870 5.4290 -0.4656 44 1 9.3775 2.9351 -1.4077 45 1 8.9454 4.6472 -1.6746 46 1 2.2721 2.1231 -1.9977 47 1 -1.4006 4.2723 -3.4999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715064243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:53 Heat of formation + Delta-G solvation = 3.936459 kcal Electronic energy + Delta-G solvation = -27278.311537 eV Core-core repulsion = 23587.469893 eV Total energy + Delta-G solvation = -3690.841644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69078 -39.16964 -37.45583 -36.91391 -33.96323 -32.42383 -31.43840 -30.33800 -29.15733 -28.74502 -27.65176 -25.52134 -23.78671 -22.64466 -21.41277 -20.86785 -20.71719 -20.30703 -19.36275 -17.99213 -17.69740 -16.79813 -16.01881 -15.74153 -15.58707 -15.11999 -15.05390 -14.66863 -14.23064 -14.14916 -13.82606 -13.38042 -13.31703 -13.23990 -12.97630 -12.84558 -12.52211 -12.40662 -11.61821 -11.55671 -11.23389 -11.19794 -11.14110 -11.02880 -10.94221 -10.90289 -10.73116 -10.66295 -10.44810 -10.33074 -10.07695 -10.01086 -9.63750 -9.56191 -9.52814 -9.04836 -9.00853 -8.83575 -7.41019 -5.87028 -3.23478 0.16720 1.12338 1.50822 2.36844 3.17344 3.24104 3.29416 3.33669 3.39194 3.98384 4.49424 4.56978 4.61290 4.64474 4.87686 5.04333 5.07957 5.13520 5.23062 5.39375 5.39903 5.49014 5.55420 5.60361 5.67024 5.69288 5.76887 5.82498 5.82895 5.84990 5.94490 5.97914 6.10194 6.15974 6.21549 6.26665 6.32383 6.44331 6.49559 6.54698 6.69542 6.88626 7.24960 7.46160 7.61645 7.88201 8.21738 8.31146 9.08591 9.81108 10.00091 11.30493 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.003403 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.719104 B = 8227.021600 C = 9259.535833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.709 5.709 7 C 0.594 3.406 8 O -0.531 6.531 9 C -0.294 4.294 10 S 0.181 5.819 11 C 0.026 3.974 12 N -0.470 5.470 13 C 0.151 3.849 14 C -0.046 4.046 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.109 4.109 19 N -0.747 5.747 20 C -0.243 4.243 21 H 0.096 0.904 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.875 3.125 25 H -0.283 1.283 26 H -0.277 1.277 27 H -0.291 1.291 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.204 0.796 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.133 2.662 7.361 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.360 5.360 7 C 0.379 3.621 8 O -0.411 6.411 9 C -0.418 4.418 10 S 0.437 5.563 11 C -0.270 4.270 12 N -0.183 5.183 13 C 0.013 3.987 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.147 4.147 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.113 0.887 22 C -0.187 4.187 23 N -0.577 5.577 24 Si 0.705 3.295 25 H -0.210 1.210 26 H -0.204 1.204 27 H -0.217 1.217 28 H 0.107 0.893 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.221 0.779 37 H 0.147 0.853 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.786 2.656 7.397 19.445 hybrid contribution 0.906 0.128 -1.263 1.559 sum 18.691 2.784 6.134 19.868 Atomic orbital electron populations 1.21779 0.95135 0.99766 1.03798 1.22030 0.97416 0.97673 1.00176 1.20564 0.89624 0.93187 0.90863 0.91834 1.21818 0.95774 0.81806 1.01860 1.45953 1.06380 1.11346 1.72322 1.16684 0.82678 0.85785 0.76920 1.90669 1.55335 1.44344 1.50800 1.25610 0.97585 0.98770 1.19863 1.84467 1.11441 0.97320 1.63107 1.28729 0.90996 1.05228 1.02004 1.66028 1.31700 1.04592 1.16008 1.20608 0.92850 0.89999 0.95261 1.21090 0.91084 0.98771 0.95685 1.22370 0.94369 1.01618 0.96498 1.22470 0.96282 1.01058 0.96148 1.22323 0.96726 1.01053 0.95657 1.22098 0.94235 1.01364 0.96999 1.42858 1.17021 1.67673 1.11570 1.19046 0.90797 1.27473 0.99948 0.88670 1.24640 0.96316 1.00297 0.97411 1.69687 1.19049 1.42248 1.26670 0.86708 0.81116 0.77880 0.83793 1.20989 1.20356 1.21709 0.89337 0.94806 0.93856 0.92607 0.93480 0.90954 0.91421 0.75518 0.77910 0.85321 0.91147 0.91678 0.91454 0.91706 0.91967 0.91558 0.91563 0.91888 0.80537 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.12 5.61 -26.73 -0.15 -2.27 16 3 C 0.17 2.87 2.59 -67.93 -0.18 2.69 16 4 H 0.06 1.12 8.08 -51.92 -0.42 0.70 16 5 C 0.11 1.72 5.23 -4.04 -0.02 1.70 16 6 N -0.71 -11.17 5.38 -61.62 -0.33 -11.50 16 7 C 0.59 9.55 7.78 -12.85 -0.10 9.45 16 8 O -0.53 -9.35 14.00 5.20 0.07 -9.27 16 9 C -0.29 -4.27 6.48 -37.09 -0.24 -4.51 16 10 S 0.18 2.19 22.35 -107.50 -2.40 -0.21 16 11 C 0.03 0.27 12.22 51.75 0.63 0.90 16 12 N -0.47 -6.00 9.98 -11.53 -0.12 -6.12 16 13 C 0.15 2.10 5.14 -83.89 -0.43 1.67 16 14 C -0.05 -0.59 3.19 -90.65 -0.29 -0.88 16 15 C -0.11 -1.24 6.34 -25.07 -0.16 -1.40 16 16 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 17 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 18 C -0.11 -1.28 6.42 -25.61 -0.16 -1.44 16 19 N -0.75 -15.68 4.31 -53.43 -0.23 -15.91 16 20 C -0.24 -6.10 8.23 -15.06 -0.12 -6.22 16 21 H 0.10 2.57 7.55 -52.49 -0.40 2.17 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -27.40 13.97 55.49 0.78 -26.63 16 24 Si 0.87 20.94 27.74 -169.99 -4.72 16.23 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.39 6.51 56.52 0.37 -6.03 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.41 6.54 7.32 -40.82 -0.30 6.24 16 36 H 0.20 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.91 4.96 -51.93 -0.26 1.65 16 38 H 0.07 0.83 7.54 -51.93 -0.39 0.43 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 46 H 0.36 7.78 5.65 -40.82 -0.23 7.55 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -29.62 384.91 -9.83 -39.45 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.37 Total: 13.20 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.32 Total: -5.04 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.10 Total: -60.15 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.72 Total: 16.23 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.40 Total: -0.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.62 -9.83 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715064243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.390 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds