Wall clock time and date at job start Tue Mar 31 2020 19:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09008 * 109.47230 * 54.99524 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99496 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34769 * 119.99943 * 180.02562 * 6 5 3 8 8 O 1.21685 * 120.00205 * 359.97438 * 7 6 5 9 9 C 1.46689 * 120.00160 * 180.02562 * 7 6 5 10 10 S 1.76212 * 126.12796 * 0.02562 * 9 7 6 11 11 C 1.70953 * 90.31171 * 180.02562 * 10 9 7 12 12 N 1.29420 * 110.39434 * 0.02562 * 11 10 9 13 13 C 1.30943 * 117.36253 * 359.70987 * 12 11 10 14 14 C 1.50702 * 122.90592 * 180.34512 * 13 12 11 15 15 C 1.54263 * 110.03248 * 57.35863 * 14 13 12 16 16 C 1.54895 * 104.19514 * 217.10525 * 15 14 13 17 17 C 1.54882 * 102.74833 * 37.94189 * 16 15 14 18 18 C 1.53875 * 110.03224 * 300.18998 * 14 13 12 19 19 N 1.46493 * 109.47225 * 294.99845 * 3 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09001 * 109.46624 * 59.99941 * 1 2 3 29 29 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47495 * 300.00437 * 1 2 3 31 31 H 1.08997 * 109.47495 * 239.99562 * 2 1 3 32 32 H 1.09001 * 109.46831 * 119.99547 * 2 1 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 34 34 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 35 35 H 0.97003 * 120.00245 * 0.02562 * 6 5 3 36 36 H 1.08008 * 124.80107 * 179.97438 * 11 10 9 37 37 H 1.09001 * 110.01550 * 178.80067 * 14 13 12 38 38 H 1.08995 * 110.48672 * 335.78011 * 15 14 13 39 39 H 1.09005 * 110.48813 * 98.43068 * 15 14 13 40 40 H 1.09006 * 110.75446 * 279.62682 * 16 15 14 41 41 H 1.08999 * 110.75504 * 156.25522 * 16 15 14 42 42 H 1.09003 * 110.49153 * 203.38261 * 17 16 15 43 43 H 1.09002 * 110.60429 * 80.79186 * 17 16 15 44 44 H 1.09003 * 110.03433 * 238.56981 * 18 14 13 45 45 H 1.08996 * 110.03669 * 359.95077 * 18 14 13 46 46 H 0.97000 * 120.00040 * 264.99759 * 19 3 2 47 47 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5649 1.4443 0.1259 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0629 0.0861 8 8 6.1661 2.1452 0.2582 9 6 5.8846 4.4372 -0.0333 10 16 4.9044 5.8803 -0.2815 11 6 6.3132 6.8487 -0.2800 12 7 7.3651 6.1144 -0.1092 13 6 7.1828 4.8254 0.0320 14 6 8.3173 3.8566 0.2452 15 6 9.1238 4.2548 1.4984 16 6 10.5926 3.9391 1.1211 17 6 10.6583 4.3508 -0.3706 18 6 9.2929 3.9176 -0.9432 19 7 1.6525 2.0974 -1.2518 20 6 0.4157 2.6734 -1.3689 21 1 -0.2740 2.6452 -0.5383 22 6 0.0485 3.2936 -2.5552 23 7 -1.1424 3.8425 -2.6696 24 14 1.2410 3.3418 -3.9922 25 1 2.0724 4.5692 -3.9044 26 1 2.1190 2.1450 -3.9472 27 1 0.4798 3.3496 -5.2672 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0377 1.0962 34 1 3.9955 0.8311 -0.6658 35 1 3.4410 3.5484 -0.1307 36 1 6.3240 7.9215 -0.4047 37 1 7.9278 2.8447 0.3569 38 1 9.0038 5.3178 1.7074 39 1 8.8140 3.6588 2.3569 40 1 10.8013 2.8756 1.2379 41 1 11.2817 4.5369 1.7175 42 1 11.4681 3.8248 -0.8763 43 1 10.7870 5.4290 -0.4656 44 1 9.3775 2.9351 -1.4077 45 1 8.9454 4.6472 -1.6746 46 1 2.2721 2.1231 -1.9977 47 1 -1.4006 4.2723 -3.4999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715064243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:53 Heat of formation + Delta-G solvation = -14.435057 kcal Electronic energy + Delta-G solvation = -27279.108186 eV Core-core repulsion = 23587.469893 eV Total energy + Delta-G solvation = -3691.638293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72707 -40.36187 -38.42026 -38.30934 -35.39274 -34.20193 -32.43545 -32.08879 -30.34049 -29.60259 -28.86608 -26.49214 -25.38426 -24.18914 -22.54860 -21.90861 -21.73279 -21.50579 -20.59339 -19.52726 -18.92772 -17.96620 -17.16965 -17.13587 -16.62533 -16.37120 -16.06783 -15.95168 -15.64673 -15.32169 -15.01640 -14.75499 -14.66260 -14.46263 -14.24449 -14.16800 -14.03445 -13.34330 -13.10964 -12.92845 -12.86106 -12.45980 -12.40069 -12.11080 -12.01105 -11.99111 -11.92728 -11.83804 -11.78643 -11.62331 -11.45949 -11.42595 -11.03260 -10.95366 -10.67812 -10.62067 -10.18535 -9.87518 -9.30860 -7.96045 -5.28169 -0.81864 0.15705 0.55403 1.34435 1.37804 1.39971 1.45678 2.01382 2.05839 2.50334 3.08524 3.35043 3.55179 3.66240 3.70562 3.76749 3.81824 3.91897 4.13324 4.28293 4.29709 4.42700 4.53185 4.54305 4.62693 4.63334 4.70736 4.74259 4.80484 4.83538 4.93193 5.04819 5.05390 5.06912 5.09889 5.18579 5.25260 5.28541 5.32516 5.46884 5.50413 5.55461 5.72804 5.86752 6.26454 6.31205 6.54410 6.98772 7.12073 7.86515 8.04736 9.24960 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.003403 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.719104 B = 8227.021600 C = 9259.535833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.061 0.939 5 C 0.120 3.880 6 N -0.711 5.711 7 C 0.594 3.406 8 O -0.552 6.552 9 C -0.327 4.327 10 S 0.179 5.821 11 C 0.051 3.949 12 N -0.486 5.486 13 C 0.154 3.846 14 C -0.051 4.051 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.108 4.108 19 N -0.748 5.748 20 C -0.204 4.204 21 H 0.071 0.929 22 C -0.055 4.055 23 N -0.980 5.980 24 Si 0.931 3.069 25 H -0.276 1.276 26 H -0.263 1.263 27 H -0.304 1.304 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.639 2.748 8.007 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.079 0.921 5 C -0.004 4.004 6 N -0.362 5.362 7 C 0.380 3.620 8 O -0.434 6.434 9 C -0.451 4.451 10 S 0.435 5.565 11 C -0.244 4.244 12 N -0.200 5.200 13 C 0.015 3.985 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.146 4.146 19 N -0.391 5.391 20 C -0.335 4.335 21 H 0.089 0.911 22 C -0.247 4.247 23 N -0.632 5.632 24 Si 0.761 3.239 25 H -0.203 1.203 26 H -0.188 1.188 27 H -0.232 1.232 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.262 0.738 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.195 0.805 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.332 2.705 8.078 22.045 hybrid contribution 0.125 0.102 -1.343 1.352 sum 20.458 2.807 6.735 21.720 Atomic orbital electron populations 1.21692 0.96295 1.00482 1.01637 1.21953 0.96183 0.96765 1.01830 1.20723 0.90988 0.93593 0.88807 0.92091 1.21742 0.93988 0.81889 1.02809 1.45963 1.06415 1.11320 1.72482 1.16868 0.82411 0.86367 0.76313 1.90657 1.55687 1.45247 1.51805 1.25500 0.98364 0.98830 1.22412 1.84469 1.11929 0.96690 1.63365 1.29479 0.89579 1.06640 0.98676 1.66092 1.32318 1.04201 1.17347 1.20811 0.92859 0.90668 0.94142 1.21096 0.91404 0.97640 0.97071 1.22342 0.95430 1.01153 0.95621 1.22471 0.95190 1.01729 0.96031 1.22304 0.95846 1.01224 0.95858 1.22088 0.95153 1.01010 0.96346 1.42856 1.15491 1.67726 1.13068 1.18954 0.91325 1.24811 0.98432 0.91122 1.25229 0.97764 1.01584 1.00090 1.69840 1.21329 1.44889 1.27110 0.85766 0.79275 0.78573 0.80301 1.20255 1.18815 1.23166 0.93523 0.92736 0.93851 0.92641 0.90064 0.89113 0.91600 0.75756 0.73790 0.87346 0.91635 0.91863 0.90911 0.90105 0.90455 0.91517 0.91707 0.93034 0.80541 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.18 71.98 0.66 -4.20 16 2 C -0.13 -3.80 5.61 30.59 0.17 -3.63 16 3 C 0.17 5.48 2.59 44.99 0.12 5.60 16 4 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 5 C 0.12 3.48 5.23 86.38 0.45 3.94 16 6 N -0.71 -21.78 5.38 -467.08 -2.51 -24.30 16 7 C 0.59 18.82 7.78 86.45 0.67 19.49 16 8 O -0.55 -19.29 14.00 -4.30 -0.06 -19.35 16 9 C -0.33 -9.30 6.48 23.88 0.15 -9.14 16 10 S 0.18 4.11 22.35 -56.49 -1.26 2.84 16 11 C 0.05 0.95 12.22 130.60 1.60 2.54 16 12 N -0.49 -11.56 9.98 -190.40 -1.90 -13.46 16 13 C 0.15 4.15 5.14 42.09 0.22 4.37 16 14 C -0.05 -1.31 3.19 -10.82 -0.03 -1.34 16 15 C -0.11 -2.28 6.34 31.67 0.20 -2.08 16 16 C -0.12 -1.95 6.91 31.88 0.22 -1.73 16 17 C -0.11 -2.01 6.83 31.67 0.22 -1.79 16 18 C -0.11 -2.43 6.42 31.32 0.20 -2.23 16 19 N -0.75 -30.82 4.31 -322.94 -1.39 -32.22 16 20 C -0.20 -10.35 8.23 84.03 0.69 -9.66 16 21 H 0.07 3.91 7.55 -2.91 -0.02 3.89 16 22 C -0.06 -3.03 5.50 84.86 0.47 -2.56 16 23 N -0.98 -59.57 13.97 21.65 0.30 -59.26 16 24 Si 0.93 43.58 27.74 68.60 1.90 45.48 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.26 -11.48 6.51 99.48 0.65 -10.83 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 28 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.41 12.76 7.32 -92.71 -0.68 12.08 16 36 H 0.25 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.11 3.24 4.96 -2.39 -0.01 3.22 16 38 H 0.06 1.45 7.54 -2.39 -0.02 1.43 16 39 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 46 H 0.36 15.08 5.65 -92.71 -0.52 14.56 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -65.31 384.91 0.81 -64.51 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.27 Total: 38.19 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.00 Total: -2.43 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.50 Total: -129.24 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.90 Total: 45.48 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.26 Total: 2.84 kcal Total: -65.31 0.81 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715064243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.071 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds