Wall clock time and date at job start Tue Mar 31 2020 19:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 N 1.46505 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99699 * 270.00107 * 4 3 2 6 6 H 1.08002 * 119.99777 * 142.68726 * 5 4 3 7 7 C 1.38813 * 120.00019 * 322.67801 * 5 4 3 8 8 N 1.31622 * 119.99694 * 157.18342 * 7 5 4 9 9 Si 1.86796 * 120.00112 * 337.18165 * 7 5 4 10 10 H 1.48500 * 109.47051 * 95.36369 * 9 7 5 11 11 H 1.48507 * 109.47138 * 215.35871 * 9 7 5 12 12 H 1.48493 * 109.47222 * 335.35899 * 9 7 5 13 13 C 1.46497 * 120.00026 * 90.00253 * 4 3 2 14 14 C 1.52996 * 109.47020 * 267.61505 * 13 4 3 15 15 N 1.46503 * 109.46842 * 178.14719 * 14 13 4 16 16 C 1.34782 * 119.99883 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99835 * 359.97438 * 16 15 14 18 18 C 1.50689 * 120.00080 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47470 * 179.97438 * 18 16 15 20 20 C 1.33640 * 122.75101 * 85.01719 * 19 18 16 21 21 S 1.76198 * 107.92356 * 179.73704 * 20 19 18 22 22 C 1.70975 * 90.28233 * 0.02562 * 21 20 19 23 23 C 1.50710 * 124.91400 * 179.97438 * 22 21 20 24 24 C 1.53003 * 117.49670 * 8.60436 * 23 22 21 25 25 C 1.52997 * 117.49750 * 299.97765 * 23 22 21 26 26 N 1.29024 * 110.17024 * 0.02562 * 22 21 20 27 27 H 1.08997 * 109.47158 * 299.99355 * 1 2 3 28 28 H 1.09003 * 109.47108 * 59.99614 * 1 2 3 29 29 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47378 * 240.00321 * 2 1 3 31 31 H 1.08996 * 109.47496 * 120.00322 * 2 1 3 32 32 H 1.08997 * 109.46543 * 60.00268 * 3 2 1 33 33 H 1.08996 * 109.47163 * 300.00526 * 3 2 1 34 34 H 0.97003 * 119.99902 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46991 * 147.61102 * 13 4 3 36 36 H 1.09000 * 109.46890 * 27.61539 * 13 4 3 37 37 H 1.08998 * 109.47324 * 58.14479 * 14 13 4 38 38 H 1.09005 * 109.47002 * 298.14060 * 14 13 4 39 39 H 0.96993 * 120.00210 * 359.97438 * 15 14 13 40 40 H 1.09005 * 109.47533 * 59.99585 * 18 16 15 41 41 H 1.09004 * 109.47501 * 299.99656 * 18 16 15 42 42 H 1.07997 * 126.03635 * 359.74033 * 20 19 18 43 43 H 1.08997 * 115.54437 * 154.30991 * 23 22 21 44 44 H 1.08998 * 117.49961 * 359.97438 * 24 23 22 45 45 H 1.08998 * 117.49363 * 145.02187 * 24 23 22 46 46 H 1.08997 * 117.49742 * 214.97243 * 25 23 22 47 47 H 1.09002 * 117.50182 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 5.1044 0.8752 1.2803 7 6 3.7097 2.1709 2.2644 8 7 4.0669 1.8462 3.4889 9 14 2.5564 3.6123 1.9791 10 1 1.1502 3.1575 2.1244 11 1 2.8378 4.6764 2.9761 12 1 2.7642 4.1491 0.6103 13 6 4.2370 1.4427 -1.2696 14 6 4.5438 0.0015 -1.6817 15 7 5.2368 -0.0003 -2.9724 16 6 5.6090 -1.1668 -3.5358 17 8 5.3707 -2.2148 -2.9739 18 6 6.3213 -1.1687 -4.8637 19 6 6.6247 -2.5882 -5.2690 20 6 5.7430 -3.3612 -5.9099 21 16 6.5008 -4.9261 -6.1956 22 6 7.9276 -4.3854 -5.4242 23 6 9.1737 -5.2124 -5.2377 24 6 9.2375 -6.5646 -5.9508 25 6 9.0480 -6.5079 -4.4335 26 7 7.7828 -3.1674 -5.0239 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.7308 2.3551 4.2432 35 1 5.1703 1.9931 -1.1506 36 1 3.6297 1.9192 -2.0392 37 1 3.6122 -0.5576 -1.7686 38 1 5.1784 -0.4646 -0.9279 39 1 5.4277 0.8379 -3.4216 40 1 7.2526 -0.6089 -4.7774 41 1 5.6862 -0.7032 -5.6174 42 1 4.7426 -3.0770 -6.2013 43 1 10.1018 -4.6489 -5.1424 44 1 8.3781 -6.8562 -6.5545 45 1 10.2079 -6.8908 -6.3249 46 1 9.8937 -6.7970 -3.8096 47 1 8.0641 -6.7620 -4.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731870473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:20 Heat of formation + Delta-G solvation = 50.220757 kcal Electronic energy + Delta-G solvation = -26053.669063 eV Core-core repulsion = 22364.834457 eV Total energy + Delta-G solvation = -3688.834606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40156 -39.08792 -37.49746 -36.77205 -34.45556 -32.59642 -32.25247 -31.43044 -29.12182 -27.62929 -25.85607 -25.61328 -23.61525 -22.85334 -21.77769 -20.98893 -20.76558 -20.31965 -19.68235 -17.89593 -17.08000 -16.70853 -16.45410 -15.84595 -15.43349 -15.25521 -14.91212 -14.53045 -14.33671 -14.12661 -13.91574 -13.44162 -13.36512 -13.22185 -12.99581 -12.70805 -12.58588 -12.31297 -12.07791 -12.00307 -11.63896 -11.46999 -11.38815 -11.17060 -11.16509 -10.95659 -10.79333 -10.72789 -10.32988 -10.15314 -9.81832 -9.76995 -9.72214 -9.48980 -9.47273 -8.80932 -8.70168 -8.52973 -6.90846 -6.02075 -3.45095 0.52223 1.16159 1.54117 2.49821 2.81866 3.29244 3.32010 3.44517 3.49058 3.55555 3.71247 4.36343 4.49910 4.50876 4.52349 4.77374 4.91437 4.95480 5.07159 5.11235 5.19057 5.23322 5.34622 5.42213 5.53922 5.61557 5.62340 5.65906 5.67824 5.75457 5.84237 5.95610 6.01699 6.11198 6.15708 6.41730 6.49458 6.54738 6.58448 6.63621 6.85091 6.93887 7.10836 7.60739 7.71767 8.02204 8.34438 8.44071 8.94656 9.67607 10.06070 11.13118 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.002108 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.332808 B =13279.287387 C =13642.736178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.137 3.863 4 N -0.600 5.600 5 C -0.273 4.273 6 H 0.079 0.921 7 C 0.039 3.961 8 N -0.896 5.896 9 Si 0.880 3.120 10 H -0.285 1.285 11 H -0.302 1.302 12 H -0.270 1.270 13 C 0.141 3.859 14 C 0.096 3.904 15 N -0.725 5.725 16 C 0.512 3.488 17 O -0.534 6.534 18 C -0.070 4.070 19 C 0.095 3.905 20 C -0.246 4.246 21 S 0.117 5.883 22 C 0.082 3.918 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.159 4.159 26 N -0.461 5.461 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.176 0.824 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -11.382 -23.555 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.322 5.322 5 C -0.401 4.401 6 H 0.096 0.904 7 C -0.162 4.162 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.213 1.213 11 H -0.230 1.230 12 H -0.195 1.195 13 C 0.014 3.986 14 C -0.029 4.029 15 N -0.377 5.377 16 C 0.297 3.703 17 O -0.411 6.411 18 C -0.112 4.112 19 C -0.037 4.037 20 C -0.385 4.385 21 S 0.372 5.628 22 C -0.196 4.196 23 C -0.107 4.107 24 C -0.208 4.208 25 C -0.198 4.198 26 N -0.175 5.175 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.194 0.806 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.333 -12.737 -23.130 26.938 hybrid contribution -0.876 2.110 0.166 2.290 sum 4.458 -10.627 -22.964 25.693 Atomic orbital electron populations 1.21745 0.97341 1.00644 1.00971 1.22123 0.93847 1.00123 1.02108 1.21265 0.84129 0.94392 0.99071 1.44010 1.00313 1.86128 1.01720 1.18732 1.09224 1.25105 0.87040 0.90363 1.25443 0.97938 0.97726 0.95132 1.69891 1.46425 1.39520 0.97821 0.86894 0.80273 0.84092 0.77740 1.21327 1.22992 1.19510 1.20978 0.96885 0.92250 0.88518 1.22378 0.96494 1.01394 0.82651 1.46030 1.60041 1.08056 1.23548 1.20283 0.79260 0.84192 0.86612 1.90730 1.54908 1.31468 1.63952 1.20222 1.02793 0.92082 0.96143 1.19427 0.88554 0.97283 0.98475 1.26734 1.05391 0.96334 1.10001 1.83716 1.08441 1.15512 1.55091 1.25995 0.98846 0.93854 1.00945 1.20408 0.94539 0.88579 1.07214 1.23145 1.04120 0.97933 0.95561 1.23160 1.04411 0.98132 0.94069 1.65885 1.23158 1.08664 1.19744 0.93127 0.93585 0.93493 0.92917 0.91309 0.92791 0.94469 0.92648 0.92208 0.93986 0.91942 0.91362 0.76975 0.87031 0.87246 0.80637 0.84892 0.88377 0.87246 0.87342 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.14 -2.76 6.26 -26.73 -0.17 -2.93 16 3 C 0.14 2.91 4.55 -4.04 -0.02 2.89 16 4 N -0.60 -13.78 2.08 -173.24 -0.36 -14.14 16 5 C -0.27 -7.48 9.92 -15.06 -0.15 -7.63 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.04 1.10 5.30 -17.43 -0.09 1.01 16 8 N -0.90 -27.21 13.97 55.49 0.78 -26.43 16 9 Si 0.88 21.95 25.07 -169.99 -4.26 17.68 16 10 H -0.29 -6.94 6.66 56.52 0.38 -6.56 16 11 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.14 2.60 5.83 -4.05 -0.02 2.58 16 14 C 0.10 1.71 5.99 -4.04 -0.02 1.69 16 15 N -0.73 -10.05 5.56 -60.30 -0.33 -10.38 16 16 C 0.51 7.69 7.82 -10.99 -0.09 7.60 16 17 O -0.53 -10.64 16.03 5.56 0.09 -10.55 16 18 C -0.07 -0.76 6.11 -29.04 -0.18 -0.93 16 19 C 0.09 1.22 5.23 -84.22 -0.44 0.78 16 20 C -0.25 -2.79 11.14 29.12 0.32 -2.46 16 21 S 0.12 1.17 21.94 -107.50 -2.36 -1.19 16 22 C 0.08 0.96 7.04 -13.45 -0.09 0.86 16 23 C -0.09 -0.76 6.33 -91.77 -0.58 -1.34 16 24 C -0.17 -1.05 10.02 -26.72 -0.27 -1.32 16 25 C -0.16 -1.19 10.23 -26.73 -0.27 -1.46 16 26 N -0.46 -6.48 10.53 -8.05 -0.08 -6.56 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.98 6.37 -51.93 -0.33 0.65 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.05 1.27 3.27 -51.93 -0.17 1.10 16 33 H 0.04 0.70 7.87 -51.93 -0.41 0.30 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 36 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 37 H 0.06 1.19 6.37 -51.93 -0.33 0.86 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.40 4.04 8.47 -40.82 -0.35 3.70 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 0.58 7.22 -51.93 -0.38 0.21 16 45 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -35.04 397.24 -9.70 -44.74 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.44 Total: 3.54 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.70 Total: -2.70 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.01 Total: -57.52 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.26 Total: 17.68 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.36 Total: -1.19 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.04 -9.70 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.962 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds