Wall clock time and date at job start Tue Mar 31 2020 19:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 N 1.46497 * 109.47105 * 185.64671 * 3 2 1 5 5 C 1.34770 * 120.00141 * 95.82476 * 4 3 2 6 6 O 1.21617 * 119.99927 * 185.21899 * 5 4 3 7 7 C 1.47341 * 120.00135 * 5.22457 * 5 4 3 8 8 C 1.39239 * 123.08595 * 266.28826 * 7 5 4 9 9 C 1.50694 * 121.53304 * 0.08122 * 8 7 5 10 10 N 1.29511 * 116.93461 * 180.34040 * 8 7 5 11 11 S 1.69483 * 107.84646 * 359.71923 * 10 8 7 12 12 C 1.37900 * 123.08747 * 86.09802 * 7 5 4 13 13 C 1.50702 * 127.32045 * 359.97438 * 12 7 5 14 14 C 1.46504 * 119.99752 * 275.82403 * 4 3 2 15 15 H 1.08999 * 110.64477 * 359.30106 * 14 4 3 16 16 C 1.55158 * 110.71777 * 122.44241 * 14 4 3 17 17 C 1.55124 * 101.48554 * 153.73230 * 16 14 4 18 18 N 1.47416 * 104.94494 * 323.22478 * 17 16 14 19 19 C 1.36935 * 125.64873 * 203.96885 * 18 17 16 20 20 H 1.08010 * 120.00081 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00169 * 0.04050 * 19 18 17 22 22 N 1.31620 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47330 * 89.99432 * 23 21 19 25 25 H 1.48502 * 109.46945 * 209.99901 * 23 21 19 26 26 H 1.48498 * 109.46950 * 329.99492 * 23 21 19 27 27 C 1.47030 * 108.70371 * 23.99793 * 18 17 16 28 28 H 1.08998 * 109.47708 * 60.00120 * 1 2 3 29 29 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47139 * 299.99867 * 1 2 3 31 31 H 1.08991 * 109.47297 * 239.99941 * 2 1 3 32 32 H 1.09003 * 109.47255 * 119.99785 * 2 1 3 33 33 H 1.09007 * 109.47228 * 65.64494 * 3 2 1 34 34 H 1.08998 * 109.47214 * 305.64699 * 3 2 1 35 35 H 1.09000 * 109.47210 * 270.29789 * 9 8 7 36 36 H 1.09000 * 109.47023 * 30.29327 * 9 8 7 37 37 H 1.08997 * 109.47237 * 150.29099 * 9 8 7 38 38 H 1.08988 * 109.47624 * 174.73923 * 13 12 7 39 39 H 1.09002 * 109.46891 * 54.73433 * 13 12 7 40 40 H 1.09003 * 109.47001 * 294.74300 * 13 12 7 41 41 H 1.09002 * 111.00414 * 271.93949 * 16 14 4 42 42 H 1.08999 * 111.00638 * 35.79066 * 16 14 4 43 43 H 1.09001 * 110.42006 * 204.29256 * 17 16 14 44 44 H 1.09003 * 110.29587 * 82.09080 * 17 16 14 45 45 H 0.96996 * 120.00223 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.88622 * 239.52383 * 27 18 17 47 47 H 1.09005 * 109.87968 * 118.35964 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4986 1.4448 -0.1359 5 6 4.0620 1.6023 -1.3500 6 8 5.2680 1.5096 -1.4774 7 6 3.2171 1.8870 -2.5230 8 6 2.7337 0.8938 -3.3707 9 6 3.0473 -0.5618 -3.1385 10 7 2.0066 1.2788 -4.3708 11 16 1.8764 2.9671 -4.2988 12 6 2.8292 3.1613 -2.8799 13 6 3.1725 4.4508 -2.1795 14 6 4.3448 1.2759 1.0481 15 1 3.7344 1.1742 1.9454 16 6 5.2840 0.0521 0.8814 17 6 6.4681 0.4436 1.8039 18 7 6.6151 1.9008 1.6362 19 6 7.7594 2.6186 1.8608 20 1 7.7648 3.6879 1.7088 21 6 8.9126 1.9719 2.2837 22 7 8.9060 0.6689 2.4692 23 14 10.4734 2.9512 2.5909 24 1 10.5049 3.4015 4.0056 25 1 11.6562 2.0960 2.3171 26 1 10.4998 4.1345 1.6941 27 6 5.3294 2.4559 1.1883 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7615 1.9264 0.9363 34 1 1.5964 1.9847 -0.8351 35 1 3.9672 -0.8232 -3.6614 36 1 3.1731 -0.7405 -2.0706 37 1 2.2284 -1.1745 -3.5153 38 1 2.7928 5.2917 -2.7596 39 1 4.2550 4.5349 -2.0832 40 1 2.7180 4.4581 -1.1887 41 1 4.8006 -0.8614 1.2277 42 1 5.6132 -0.0498 -0.1527 43 1 7.3786 -0.0680 1.4919 44 1 6.2349 0.2027 2.8411 45 1 9.7117 0.2170 2.7651 46 1 5.4545 2.9508 0.2253 47 1 4.9548 3.1655 1.9262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732042649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:33 Heat of formation + Delta-G solvation = 13.692081 kcal Electronic energy + Delta-G solvation = -28740.333419 eV Core-core repulsion = 25049.914811 eV Total energy + Delta-G solvation = -3690.418608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.87411 -39.82373 -38.22547 -37.09539 -34.60571 -34.35672 -33.22180 -31.13036 -30.74042 -29.49595 -28.67191 -26.98737 -26.46346 -24.11538 -22.88870 -22.43259 -21.98925 -21.31022 -19.46362 -19.09052 -18.73717 -17.93357 -17.39029 -16.74922 -16.10043 -15.87776 -15.80439 -15.59855 -15.47616 -15.08245 -14.75575 -14.42430 -14.34417 -14.25621 -13.94472 -13.73678 -13.57548 -13.38480 -13.32068 -13.19578 -13.05080 -12.96061 -12.84871 -12.72147 -12.42932 -12.29924 -12.11058 -12.02639 -11.99750 -11.83571 -11.73011 -11.52842 -11.35244 -10.72902 -10.65727 -10.38968 -9.66512 -9.63907 -8.83821 -7.74722 -5.18021 -0.53268 0.28360 0.66312 1.03995 1.44515 1.47670 1.53001 1.55916 1.98231 2.51500 3.30450 3.34036 3.48085 3.76499 3.84358 3.91052 3.94456 4.08826 4.13005 4.22331 4.25486 4.27739 4.39402 4.44575 4.50370 4.53237 4.58032 4.69464 4.72013 4.73449 4.78555 4.92980 4.95497 5.00106 5.02361 5.02740 5.09682 5.25954 5.29313 5.44489 5.47032 5.53028 5.65170 5.76828 5.83140 6.33314 6.39444 7.12968 7.15708 7.81183 8.44858 9.27045 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.003666 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.268089 B = 7636.044204 C = 8430.517251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C 0.106 3.894 4 N -0.587 5.587 5 C 0.588 3.412 6 O -0.552 6.552 7 C -0.228 4.228 8 C 0.154 3.846 9 C -0.093 4.093 10 N -0.491 5.491 11 S 0.321 5.679 12 C -0.134 4.134 13 C -0.088 4.088 14 C 0.153 3.847 15 H 0.122 0.878 16 C -0.141 4.141 17 C 0.161 3.839 18 N -0.618 5.618 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.132 3.868 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.065 0.935 44 H -0.004 1.004 45 H 0.246 0.754 46 H 0.017 0.983 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.168 2.330 -9.357 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C -0.015 4.015 4 N -0.318 5.318 5 C 0.373 3.627 6 O -0.429 6.429 7 C -0.248 4.248 8 C -0.023 4.023 9 C -0.154 4.154 10 N -0.313 5.313 11 S 0.477 5.523 12 C -0.264 4.264 13 C -0.147 4.147 14 C 0.050 3.950 15 H 0.139 0.861 16 C -0.180 4.180 17 C 0.036 3.964 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.093 0.907 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.199 1.199 27 C 0.006 3.994 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -23.647 2.617 -11.191 26.292 hybrid contribution 2.482 -0.130 1.655 2.986 sum -21.165 2.488 -9.537 23.347 Atomic orbital electron populations 1.21639 0.93529 1.02513 1.02295 1.22055 0.97385 0.96153 1.02836 1.21931 0.77089 0.98372 1.04155 1.47919 1.07738 1.70844 1.05304 1.17676 0.86365 0.76046 0.82625 1.90920 1.16302 1.50347 1.85365 1.20139 1.08845 0.93405 1.02453 1.21288 0.92683 0.98771 0.89569 1.20782 1.03775 0.87446 1.03418 1.76260 1.24830 1.06398 1.23819 1.83714 1.44990 1.03793 1.19840 1.26381 0.99859 0.98710 1.01488 1.20533 1.02664 0.90333 1.01144 1.21971 0.91000 0.94486 0.87591 0.86052 1.23243 0.96680 0.97326 1.00747 1.21626 0.96598 0.84333 0.93862 1.44559 1.06961 1.04293 1.78541 1.19394 0.88421 0.91406 1.37205 0.90729 1.25602 1.00969 0.97006 1.02371 1.70064 1.27616 1.08231 1.53946 0.85066 0.78846 0.77411 0.77943 1.20818 1.21981 1.19888 1.21597 0.86339 0.95201 0.96294 0.92751 0.91902 0.91514 0.92090 0.91333 0.88319 0.89897 0.89927 0.90120 0.87943 0.87227 0.91252 0.88228 0.89726 0.92068 0.91730 0.98601 0.94429 0.96516 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.15 -2.35 6.25 30.60 0.19 -2.16 16 3 C 0.11 1.93 5.34 86.38 0.46 2.39 16 4 N -0.59 -16.14 2.54 -795.19 -2.02 -18.16 16 5 C 0.59 19.10 4.91 86.64 0.42 19.53 16 6 O -0.55 -24.45 13.50 -4.08 -0.06 -24.50 16 7 C -0.23 -6.03 3.78 -20.72 -0.08 -6.10 16 8 C 0.15 3.81 6.75 43.14 0.29 4.10 16 9 C -0.09 -2.03 9.46 71.23 0.67 -1.35 16 10 N -0.49 -11.75 11.97 -51.10 -0.61 -12.36 16 11 S 0.32 6.02 23.69 -56.49 -1.34 4.68 16 12 C -0.13 -2.89 6.29 25.61 0.16 -2.73 16 13 C -0.09 -1.56 10.09 71.24 0.72 -0.84 16 14 C 0.15 5.18 3.43 46.18 0.16 5.34 16 15 H 0.12 3.39 7.94 -2.39 -0.02 3.37 16 16 C -0.14 -5.64 6.43 32.06 0.21 -5.43 16 17 C 0.16 8.38 5.89 86.93 0.51 8.90 16 18 N -0.62 -33.79 3.40 -691.56 -2.35 -36.14 16 19 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 20 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 22 N -0.95 -58.93 10.09 21.65 0.22 -58.72 16 23 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 27 C 0.13 5.76 6.50 86.73 0.56 6.32 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 1.10 5.38 -2.39 -0.01 1.08 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.44 8.07 -2.38 -0.02 1.42 16 34 H 0.08 1.41 6.30 -2.39 -0.02 1.39 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.80 5.29 -2.39 -0.01 1.79 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.77 5.85 -2.39 -0.01 2.75 16 43 H 0.06 3.91 5.87 -2.39 -0.01 3.90 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.02 0.80 6.23 -2.39 -0.01 0.78 16 47 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -77.04 381.63 3.17 -73.87 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.97 Total: 11.22 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.33 Total: 10.33 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -4.76 Total: -125.37 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.34 Total: 4.68 kcal Total: -77.04 3.17 -73.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732042649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.561 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds