Wall clock time and date at job start Tue Mar 31 2020 19:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 H 1.08997 * 109.46761 * 54.76386 * 3 2 1 5 5 C 1.53002 * 109.47042 * 294.76371 * 3 2 1 6 6 N 1.46499 * 109.46994 * 184.99601 * 5 3 2 7 7 C 1.34778 * 120.00133 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00094 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.46910 * 179.97438 * 9 7 6 11 11 C 1.76208 * 99.99815 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99879 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99642 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00118 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47179 * 90.00032 * 15 13 11 17 17 H 1.48503 * 109.47091 * 210.00049 * 15 13 11 18 18 H 1.48503 * 109.47099 * 329.99887 * 15 13 11 19 19 N 1.46892 * 109.46965 * 174.76638 * 3 2 1 20 20 C 1.46907 * 111.00030 * 273.94765 * 19 3 2 21 21 C 1.50697 * 109.47161 * 179.86322 * 20 19 3 22 22 N 1.31883 * 119.61916 * 270.02590 * 21 20 19 23 23 C 1.31853 * 121.72963 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.75948 * 359.97438 * 23 22 21 25 25 C 1.38629 * 119.16201 * 359.72794 * 24 23 22 26 26 C 1.38183 * 119.61696 * 90.00204 * 21 20 19 27 27 C 1.50699 * 120.41877 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47403 * 305.76626 * 1 2 3 29 29 H 1.09000 * 109.47186 * 65.76882 * 1 2 3 30 30 H 1.09001 * 109.46999 * 185.76620 * 1 2 3 31 31 H 1.09004 * 109.47019 * 240.00216 * 2 1 3 32 32 H 1.08996 * 109.46827 * 120.00432 * 2 1 3 33 33 H 1.08998 * 109.47513 * 304.99825 * 5 3 2 34 34 H 1.09009 * 109.47113 * 65.00508 * 5 3 2 35 35 H 0.97006 * 120.00075 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46788 * 299.99905 * 9 7 6 37 37 H 1.08998 * 109.47008 * 59.99509 * 9 7 6 38 38 H 0.97003 * 120.00021 * 179.97438 * 14 13 11 39 39 H 1.00893 * 111.00454 * 37.90531 * 19 3 2 40 40 H 1.08995 * 109.46686 * 59.86656 * 20 19 3 41 41 H 1.09000 * 109.47278 * 299.86853 * 20 19 3 42 42 H 1.07996 * 119.62110 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.41782 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.79033 * 180.27869 * 25 24 23 45 45 H 1.09003 * 109.47497 * 89.99438 * 27 26 21 46 46 H 1.09009 * 109.46803 * 330.00137 * 27 26 21 47 47 H 1.08994 * 109.47280 * 209.99915 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9826 0.8394 5 6 1.6403 2.1247 -1.3099 6 7 2.2292 3.4651 -1.3618 7 6 2.0104 4.2564 -2.4307 8 8 1.3256 3.8588 -3.3493 9 6 2.6168 5.6350 -2.4844 10 16 2.1438 6.4421 -4.0339 11 6 2.9641 7.9890 -3.8359 12 1 3.5407 8.1841 -2.9438 13 6 2.8699 8.9563 -4.8269 14 7 3.4831 10.1116 -4.6791 15 14 1.8732 8.6185 -6.3702 16 1 0.4695 9.0543 -6.1581 17 1 2.4574 9.3686 -7.5109 18 1 1.9002 7.1639 -6.6684 19 7 3.5035 1.4444 0.1263 20 6 3.9102 1.3923 1.5370 21 6 5.4145 1.3924 1.6264 22 7 6.0678 0.2468 1.6215 23 6 7.3832 0.1984 1.6983 24 6 8.1294 1.3586 1.7870 25 6 7.4780 2.5823 1.7887 26 6 6.0934 2.5929 1.7121 27 6 5.3391 3.8975 1.7160 28 1 -0.3634 0.6006 0.8338 29 1 -0.3633 0.4218 -0.9371 30 1 -0.3633 -1.0225 0.1033 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0032 1.5355 -2.1520 34 1 0.5543 2.2029 -1.3622 35 1 2.7767 3.7832 -0.6269 36 1 2.2545 6.2242 -1.6420 37 1 3.7027 5.5566 -2.4327 38 1 3.4177 10.7875 -5.3718 39 1 3.9125 0.6844 -0.3962 40 1 3.5191 0.4836 1.9945 41 1 3.5149 2.2622 2.0615 42 1 7.8834 -0.7588 1.6919 43 1 9.2066 1.3125 1.8492 44 1 8.0353 3.5052 1.8524 45 1 5.0958 4.1736 2.7420 46 1 4.4192 3.7870 1.1416 47 1 5.9564 4.6755 1.2670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732190870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:48 Heat of formation + Delta-G solvation = -17.268285 kcal Electronic energy + Delta-G solvation = -26259.411473 eV Core-core repulsion = 22567.650322 eV Total energy + Delta-G solvation = -3691.761151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69620 -39.34134 -37.84976 -34.53909 -33.83380 -33.38753 -32.40465 -31.63269 -29.86797 -28.06213 -27.24865 -25.67325 -25.40790 -23.79910 -22.73302 -21.81757 -21.04237 -20.21167 -17.84073 -17.24818 -16.84975 -16.31934 -16.23043 -16.07687 -15.30904 -15.10586 -14.94110 -14.91294 -14.36789 -14.23156 -13.86905 -13.59252 -13.39942 -13.30050 -13.17728 -12.97770 -12.94007 -12.80056 -12.74997 -12.50559 -12.21156 -12.00119 -11.74644 -11.50500 -11.37196 -11.22458 -10.97927 -10.96784 -10.54983 -10.03283 -9.82343 -9.76179 -9.41464 -9.13890 -8.97315 -8.78423 -8.73314 -8.44413 -6.86608 -6.25859 -3.96528 0.76918 0.98296 2.84995 3.11515 3.31840 3.35377 3.42057 3.53857 3.74117 3.83147 4.12964 4.36042 4.36676 4.49468 4.52501 4.57147 4.63065 4.73294 4.82935 4.84290 5.01502 5.06019 5.13402 5.15323 5.19712 5.21526 5.34783 5.38054 5.40487 5.44821 5.50339 5.64721 5.66159 5.73470 5.82201 5.84918 5.87093 5.90247 5.95057 6.01614 6.09576 6.39811 6.56755 6.71264 6.98521 7.67862 7.82744 7.97493 8.44927 8.65029 9.20772 10.83468 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002730 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.914185 B =10254.542208 C =12357.763938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.149 4.149 3 C 0.075 3.925 4 H 0.086 0.914 5 C 0.135 3.865 6 N -0.722 5.722 7 C 0.528 3.472 8 O -0.526 6.526 9 C -0.122 4.122 10 S -0.144 6.144 11 C -0.519 4.519 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.882 5.882 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.235 1.235 19 N -0.676 5.676 20 C 0.108 3.892 21 C 0.125 3.875 22 N -0.479 5.479 23 C 0.089 3.911 24 C -0.168 4.168 25 C -0.080 4.080 26 C -0.109 4.109 27 C -0.118 4.118 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.270 0.730 39 H 0.350 0.650 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -21.201 18.343 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.035 4.035 4 H 0.104 0.896 5 C 0.010 3.990 6 N -0.376 5.376 7 C 0.314 3.686 8 O -0.402 6.402 9 C -0.273 4.273 10 S 0.083 5.917 11 C -0.667 4.667 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.519 5.519 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.307 5.307 20 C -0.021 4.021 21 C -0.014 4.014 22 N -0.188 5.188 23 C -0.068 4.068 24 C -0.188 4.188 25 C -0.106 4.106 26 C -0.112 4.112 27 C -0.175 4.175 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.171 0.829 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.665 -21.784 16.643 27.543 hybrid contribution 1.316 0.542 1.034 1.759 sum 3.981 -21.242 17.677 27.920 Atomic orbital electron populations 1.21779 0.94933 1.01881 1.02495 1.22171 0.97299 0.96798 1.02599 1.21937 0.87491 0.95497 0.98549 0.89557 1.21281 0.97885 0.83464 0.96405 1.45743 1.54232 1.15492 1.22133 1.20243 0.80321 0.86383 0.81666 1.90688 1.38311 1.74668 1.36515 1.23255 1.04034 0.95209 1.04756 1.84779 1.69392 1.16562 1.20992 1.22329 1.36427 0.98343 1.09589 0.89437 1.24713 0.94645 0.93942 0.98048 1.69940 1.41891 1.05335 1.34713 0.86735 0.80862 0.81462 0.82803 1.19242 1.20019 1.15883 1.60554 1.08055 1.52411 1.09694 1.20823 0.88868 1.01920 0.90497 1.20933 0.96018 0.87986 0.96418 1.67434 1.10138 1.29344 1.11896 1.22656 0.89405 0.98445 0.96312 1.22152 1.01481 0.93529 1.01667 1.21566 0.93932 0.98607 0.96469 1.20746 0.94342 0.96798 0.99273 1.20861 1.01016 0.93098 1.02530 0.92530 0.91930 0.92653 0.91261 0.91590 0.91820 0.91151 0.76312 0.88721 0.88595 0.91999 0.83091 0.93208 0.89148 0.82929 0.84864 0.84726 0.91011 0.89910 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.53 37.16 0.35 -0.67 16 2 C -0.15 -1.01 5.39 -26.73 -0.14 -1.15 16 3 C 0.08 0.57 2.22 -67.72 -0.15 0.42 16 4 H 0.09 0.60 7.78 -51.93 -0.40 0.20 16 5 C 0.13 1.47 5.01 -4.04 -0.02 1.45 16 6 N -0.72 -9.34 5.39 -60.29 -0.32 -9.67 16 7 C 0.53 9.55 7.85 -10.98 -0.09 9.47 16 8 O -0.53 -11.57 15.86 5.56 0.09 -11.48 16 9 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 10 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 11 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 13 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 15 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 19 N -0.68 -5.39 5.64 -108.00 -0.61 -6.00 16 20 C 0.11 0.81 4.97 -4.97 -0.02 0.79 16 21 C 0.12 1.15 6.29 -82.59 -0.52 0.63 16 22 N -0.48 -4.79 10.27 -9.47 -0.10 -4.89 16 23 C 0.09 0.74 11.18 -17.54 -0.20 0.54 16 24 C -0.17 -1.25 10.11 -39.44 -0.40 -1.65 16 25 C -0.08 -0.64 9.86 -39.28 -0.39 -1.03 16 26 C -0.11 -0.95 5.90 -104.48 -0.62 -1.57 16 27 C -0.12 -0.87 9.21 36.01 0.33 -0.54 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 6.98 -51.93 -0.36 0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.43 7.42 -51.93 -0.39 0.04 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.81 6.96 -51.92 -0.36 0.45 16 35 H 0.40 4.35 8.14 -40.82 -0.33 4.02 16 36 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.35 3.08 8.45 -39.30 -0.33 2.74 16 40 H 0.05 0.38 7.43 -51.93 -0.39 -0.01 16 41 H 0.09 0.59 6.61 -51.93 -0.34 0.24 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.62 6.68 -51.92 -0.35 0.27 16 47 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -34.83 399.63 -9.75 -44.58 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.48 Total: 3.35 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.42 Total: -7.53 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.26 Total: -46.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.83 -9.75 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732190870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.313 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds