Wall clock time and date at job start Tue Mar 31 2020 19:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47033 * 2 1 4 4 H 1.08997 * 109.46761 * 54.76386 * 3 2 1 5 5 C 1.53002 * 109.47042 * 294.76371 * 3 2 1 6 6 N 1.46499 * 109.46994 * 184.99601 * 5 3 2 7 7 C 1.34778 * 120.00133 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00094 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.46910 * 179.97438 * 9 7 6 11 11 C 1.76208 * 99.99815 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99879 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99642 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00118 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47179 * 90.00032 * 15 13 11 17 17 H 1.48503 * 109.47091 * 210.00049 * 15 13 11 18 18 H 1.48503 * 109.47099 * 329.99887 * 15 13 11 19 19 N 1.46892 * 109.46965 * 174.76638 * 3 2 1 20 20 C 1.46907 * 111.00030 * 273.94765 * 19 3 2 21 21 C 1.50697 * 109.47161 * 179.86322 * 20 19 3 22 22 N 1.31883 * 119.61916 * 270.02590 * 21 20 19 23 23 C 1.31853 * 121.72963 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.75948 * 359.97438 * 23 22 21 25 25 C 1.38629 * 119.16201 * 359.72794 * 24 23 22 26 26 C 1.38183 * 119.61696 * 90.00204 * 21 20 19 27 27 C 1.50699 * 120.41877 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47403 * 305.76626 * 1 2 3 29 29 H 1.09000 * 109.47186 * 65.76882 * 1 2 3 30 30 H 1.09001 * 109.46999 * 185.76620 * 1 2 3 31 31 H 1.09004 * 109.47019 * 240.00216 * 2 1 3 32 32 H 1.08996 * 109.46827 * 120.00432 * 2 1 3 33 33 H 1.08998 * 109.47513 * 304.99825 * 5 3 2 34 34 H 1.09009 * 109.47113 * 65.00508 * 5 3 2 35 35 H 0.97006 * 120.00075 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46788 * 299.99905 * 9 7 6 37 37 H 1.08998 * 109.47008 * 59.99509 * 9 7 6 38 38 H 0.97003 * 120.00021 * 179.97438 * 14 13 11 39 39 H 1.00893 * 111.00454 * 37.90531 * 19 3 2 40 40 H 1.08995 * 109.46686 * 59.86656 * 20 19 3 41 41 H 1.09000 * 109.47278 * 299.86853 * 20 19 3 42 42 H 1.07996 * 119.62110 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.41782 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.79033 * 180.27869 * 25 24 23 45 45 H 1.09003 * 109.47497 * 89.99438 * 27 26 21 46 46 H 1.09009 * 109.46803 * 330.00137 * 27 26 21 47 47 H 1.08994 * 109.47280 * 209.99915 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9826 0.8394 5 6 1.6403 2.1247 -1.3099 6 7 2.2292 3.4651 -1.3618 7 6 2.0104 4.2564 -2.4307 8 8 1.3256 3.8588 -3.3493 9 6 2.6168 5.6350 -2.4844 10 16 2.1438 6.4421 -4.0339 11 6 2.9641 7.9890 -3.8359 12 1 3.5407 8.1841 -2.9438 13 6 2.8699 8.9563 -4.8269 14 7 3.4831 10.1116 -4.6791 15 14 1.8732 8.6185 -6.3702 16 1 0.4695 9.0543 -6.1581 17 1 2.4574 9.3686 -7.5109 18 1 1.9002 7.1639 -6.6684 19 7 3.5035 1.4444 0.1263 20 6 3.9102 1.3923 1.5370 21 6 5.4145 1.3924 1.6264 22 7 6.0678 0.2468 1.6215 23 6 7.3832 0.1984 1.6983 24 6 8.1294 1.3586 1.7870 25 6 7.4780 2.5823 1.7887 26 6 6.0934 2.5929 1.7121 27 6 5.3391 3.8975 1.7160 28 1 -0.3634 0.6006 0.8338 29 1 -0.3633 0.4218 -0.9371 30 1 -0.3633 -1.0225 0.1033 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0032 1.5355 -2.1520 34 1 0.5543 2.2029 -1.3622 35 1 2.7767 3.7832 -0.6269 36 1 2.2545 6.2242 -1.6420 37 1 3.7027 5.5566 -2.4327 38 1 3.4177 10.7875 -5.3718 39 1 3.9125 0.6844 -0.3962 40 1 3.5191 0.4836 1.9945 41 1 3.5149 2.2622 2.0615 42 1 7.8834 -0.7588 1.6919 43 1 9.2066 1.3125 1.8492 44 1 8.0353 3.5052 1.8524 45 1 5.0958 4.1736 2.7420 46 1 4.4192 3.7870 1.1416 47 1 5.9564 4.6755 1.2670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732190870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:48 Heat of formation + Delta-G solvation = -41.721724 kcal Electronic energy + Delta-G solvation = -26260.471853 eV Core-core repulsion = 22567.650322 eV Total energy + Delta-G solvation = -3692.821531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30253 -40.61593 -38.71179 -35.40869 -34.66763 -34.61526 -34.13640 -32.22208 -31.26927 -28.83365 -28.01577 -27.77309 -26.25912 -24.46273 -23.33226 -22.40337 -21.86055 -21.49632 -19.82548 -17.98126 -17.75947 -17.54434 -17.16863 -17.00831 -16.92595 -16.23375 -16.08688 -15.71271 -15.59364 -15.13563 -14.95041 -14.85358 -14.39343 -14.32955 -14.19379 -13.96474 -13.69385 -13.54969 -13.50635 -13.34629 -13.31470 -13.05441 -12.97325 -12.78102 -12.64120 -12.47256 -12.09787 -12.03511 -11.84969 -11.57768 -11.15347 -10.93814 -10.63937 -10.50195 -10.38400 -9.98971 -9.73413 -9.38332 -8.96585 -8.49883 -6.19817 0.17142 0.37375 1.02202 1.32375 1.48870 1.58854 1.66167 2.26063 2.35045 2.71188 2.77283 2.88476 3.21116 3.50757 3.77472 3.81842 3.89700 3.98834 4.05179 4.07735 4.18224 4.22297 4.27687 4.41837 4.50343 4.51206 4.53709 4.62334 4.64587 4.79588 4.81411 4.85225 4.85774 4.92529 4.94958 5.13815 5.21027 5.25609 5.31601 5.38626 5.42848 5.55143 5.72831 5.82583 5.97052 6.13425 6.29084 6.61690 6.95710 7.06593 7.31174 8.62566 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002730 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.914185 B =10254.542208 C =12357.763938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.088 3.912 4 H 0.101 0.899 5 C 0.134 3.866 6 N -0.696 5.696 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.109 4.109 10 S -0.178 6.178 11 C -0.526 4.526 12 H 0.063 0.937 13 C 0.045 3.955 14 N -0.918 5.918 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.238 1.238 19 N -0.679 5.679 20 C 0.115 3.885 21 C 0.109 3.891 22 N -0.502 5.502 23 C 0.074 3.926 24 C -0.168 4.168 25 C -0.093 4.093 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.277 0.723 39 H 0.345 0.655 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.149 0.851 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -22.363 19.430 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C -0.022 4.022 4 H 0.119 0.881 5 C 0.009 3.991 6 N -0.349 5.349 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.260 4.260 10 S 0.049 5.951 11 C -0.674 4.674 12 H 0.081 0.919 13 C -0.160 4.160 14 N -0.556 5.556 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.161 1.161 19 N -0.310 5.310 20 C -0.014 4.014 21 C -0.029 4.029 22 N -0.211 5.211 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.173 4.173 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.189 0.811 43 H 0.175 0.825 44 H 0.167 0.833 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.651 -22.957 17.783 29.160 hybrid contribution 1.422 0.815 0.855 1.848 sum 4.073 -22.143 18.638 29.228 Atomic orbital electron populations 1.21777 0.94779 1.02337 1.02174 1.22097 0.97311 0.95970 1.02755 1.21810 0.87502 0.95883 0.96970 0.88068 1.21437 0.97674 0.82025 0.97919 1.45545 1.53032 1.15569 1.20735 1.19946 0.79993 0.86079 0.82344 1.90678 1.40476 1.75329 1.38376 1.23244 1.05012 0.96028 1.01668 1.84717 1.69379 1.15349 1.25661 1.22464 1.36141 1.00053 1.08717 0.91913 1.25549 0.95659 0.93814 1.00955 1.70014 1.43226 1.06284 1.36069 0.85880 0.79659 0.81227 0.79694 1.18660 1.18412 1.16143 1.60519 1.08052 1.52294 1.10160 1.20812 0.88130 1.02487 0.90012 1.21175 0.96768 0.88067 0.96851 1.67443 1.11055 1.29939 1.12711 1.23085 0.89238 0.99762 0.96162 1.22444 1.02735 0.93030 1.00611 1.21882 0.94061 0.99580 0.96347 1.20966 0.94900 0.97155 0.99417 1.20864 1.00713 0.92431 1.03260 0.91833 0.93028 0.92092 0.91786 0.90743 0.93086 0.91288 0.74702 0.86896 0.87263 0.91405 0.83612 0.93167 0.87896 0.81061 0.82516 0.83315 0.89813 0.89989 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.53 71.98 0.69 -1.10 16 2 C -0.14 -1.65 5.39 30.59 0.16 -1.49 16 3 C 0.09 1.16 2.22 44.92 0.10 1.26 16 4 H 0.10 1.10 7.78 -2.39 -0.02 1.08 16 5 C 0.13 2.73 5.01 86.38 0.43 3.16 16 6 N -0.70 -16.71 5.39 -463.04 -2.50 -19.21 16 7 C 0.53 18.55 7.85 87.66 0.69 19.24 16 8 O -0.57 -24.73 15.86 -3.03 -0.05 -24.78 16 9 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16 10 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 11 C -0.53 -30.76 10.04 67.95 0.68 -30.07 16 12 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 13 C 0.05 2.68 5.50 84.86 0.47 3.15 16 14 N -0.92 -56.07 13.97 21.65 0.30 -55.76 16 15 Si 0.91 45.35 27.74 68.60 1.90 47.25 16 16 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 19 N -0.68 -9.62 5.64 -495.59 -2.80 -12.42 16 20 C 0.11 1.51 4.97 85.55 0.43 1.94 16 21 C 0.11 1.88 6.29 42.54 0.27 2.15 16 22 N -0.50 -9.54 10.27 -183.89 -1.89 -11.43 16 23 C 0.07 1.15 11.18 84.69 0.95 2.09 16 24 C -0.17 -2.24 10.11 22.36 0.23 -2.02 16 25 C -0.09 -1.37 9.86 22.47 0.22 -1.15 16 26 C -0.12 -1.97 5.90 -19.77 -0.12 -2.09 16 27 C -0.12 -1.52 9.21 71.24 0.66 -0.86 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.72 6.98 -2.39 -0.02 0.70 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.79 7.42 -2.39 -0.02 0.78 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.49 6.96 -2.38 -0.02 1.48 16 35 H 0.42 7.92 8.14 -92.70 -0.75 7.17 16 36 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 37 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 38 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.35 5.62 8.45 -89.70 -0.76 4.86 16 40 H 0.05 0.67 7.43 -2.39 -0.02 0.65 16 41 H 0.10 1.08 6.61 -2.39 -0.02 1.06 16 42 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 46 H 0.08 1.06 6.68 -2.38 -0.02 1.04 16 47 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 Total: -1.00 -75.24 399.63 -0.35 -75.60 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.57 Total: 20.36 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 6.29 Total: -9.48 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -6.88 Total: -98.83 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -75.24 -0.35 -75.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732190870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.878 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds