Wall clock time and date at job start Tue Mar 31 2020 19:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 H 1.09000 * 109.47161 * 55.90262 * 3 2 1 5 5 C 1.53001 * 109.47129 * 175.90104 * 3 2 1 6 6 N 1.46495 * 109.47266 * 175.00360 * 5 3 2 7 7 C 1.34780 * 120.00269 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99708 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00349 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.47226 * 179.97438 * 9 7 6 11 11 C 1.76195 * 99.99910 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00263 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00233 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47042 * 89.99916 * 15 13 11 17 17 H 1.48497 * 109.47264 * 209.99605 * 15 13 11 18 18 H 1.48497 * 109.47154 * 329.99919 * 15 13 11 19 19 N 1.46897 * 109.47238 * 295.89619 * 3 2 1 20 20 C 1.46893 * 111.00520 * 294.64264 * 19 3 2 21 21 C 1.50706 * 109.47552 * 180.08250 * 20 19 3 22 22 N 1.31880 * 119.61878 * 89.99673 * 21 20 19 23 23 C 1.31848 * 121.72560 * 180.02562 * 22 21 20 24 24 C 1.38229 * 120.76507 * 359.97438 * 23 22 21 25 25 C 1.38626 * 119.16026 * 359.97438 * 24 23 22 26 26 C 1.38187 * 119.61340 * 269.97930 * 21 20 19 27 27 C 1.50701 * 120.41625 * 359.97438 * 26 21 20 28 28 H 1.09004 * 109.46642 * 296.18820 * 1 2 3 29 29 H 1.09004 * 109.46815 * 56.18439 * 1 2 3 30 30 H 1.08996 * 109.47719 * 176.18651 * 1 2 3 31 31 H 1.09001 * 109.46951 * 240.00020 * 2 1 3 32 32 H 1.08999 * 109.47215 * 120.00702 * 2 1 3 33 33 H 1.09004 * 109.46833 * 294.99885 * 5 3 2 34 34 H 1.09004 * 109.47474 * 54.99743 * 5 3 2 35 35 H 0.96998 * 120.00411 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.47060 * 300.00338 * 9 7 6 37 37 H 1.09007 * 109.46808 * 60.00008 * 9 7 6 38 38 H 0.96993 * 120.00713 * 180.02562 * 14 13 11 39 39 H 1.00907 * 111.00147 * 170.68243 * 19 3 2 40 40 H 1.08994 * 109.46983 * 60.07726 * 20 19 3 41 41 H 1.09005 * 109.46871 * 300.08075 * 20 19 3 42 42 H 1.08005 * 119.62161 * 179.72507 * 23 22 21 43 43 H 1.08004 * 120.41959 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.79078 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47243 * 90.00461 * 27 26 21 46 46 H 1.09001 * 109.46316 * 210.00168 * 27 26 21 47 47 H 1.08994 * 109.47237 * 329.99645 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6180 1.9770 0.8510 5 6 3.5666 1.4436 0.1031 6 7 4.0631 2.8166 -0.0167 7 6 5.3868 3.0624 0.0448 8 8 6.1670 2.1468 0.1999 9 6 5.8976 4.4747 -0.0791 10 16 7.7035 4.4761 0.0431 11 6 8.0204 6.2009 -0.1282 12 1 7.1996 6.8902 -0.2604 13 6 9.3249 6.6736 -0.0932 14 7 10.3253 5.8335 0.0684 15 14 9.6610 8.5021 -0.2755 16 1 9.6565 9.1422 1.0645 17 1 10.9869 8.7004 -0.9143 18 1 8.6070 9.1172 -1.1215 19 7 1.6330 2.1057 -1.2459 20 6 2.2860 1.4892 -2.4083 21 6 1.8467 2.1958 -3.6648 22 7 2.5335 3.2328 -4.1035 23 6 2.1862 3.8818 -5.1974 24 6 1.0797 3.4930 -5.9290 25 6 0.3335 2.4066 -5.4994 26 6 0.7292 1.7495 -4.3441 27 6 -0.0491 0.5632 -3.8362 28 1 -0.3633 0.4536 0.9222 29 1 -0.3633 0.5719 -0.8539 30 1 -0.3634 -1.0253 -0.0683 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8659 1.0319 1.0670 34 1 3.9854 0.8345 -0.6980 35 1 3.4392 3.5489 -0.1411 36 1 5.5979 4.8863 -1.0429 37 1 5.4792 5.0840 0.7221 38 1 11.2370 6.1639 0.0932 39 1 1.8232 3.0960 -1.2072 40 1 2.0067 0.4373 -2.4664 41 1 3.3679 1.5726 -2.3039 42 1 2.7706 4.7295 -5.5234 43 1 0.8000 4.0290 -6.8240 44 1 -0.5361 2.0805 -6.0506 45 1 -0.8277 0.9045 -3.1540 46 1 -0.5060 0.0415 -4.6772 47 1 0.6234 -0.1145 -3.3104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732190872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:50 Heat of formation + Delta-G solvation = -35.242762 kcal Electronic energy + Delta-G solvation = -26588.250741 eV Core-core repulsion = 22895.710159 eV Total energy + Delta-G solvation = -3692.540582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41218 -40.76852 -38.90461 -35.26003 -34.60587 -34.51350 -34.06563 -32.13462 -31.27825 -28.87594 -28.13779 -27.66042 -26.80018 -24.21158 -23.47775 -22.67072 -21.73917 -20.77293 -19.84977 -18.34970 -17.86487 -17.59942 -17.32508 -16.89837 -16.77911 -16.52317 -16.07091 -15.80157 -15.64184 -15.15134 -14.84153 -14.67726 -14.49227 -14.46267 -14.02335 -13.98660 -13.72033 -13.51851 -13.49575 -13.32464 -13.18816 -12.99075 -12.90533 -12.71628 -12.64925 -12.26663 -12.01694 -11.77647 -11.71826 -11.51367 -11.15973 -11.00175 -10.63394 -10.33038 -10.31219 -10.19262 -9.76058 -9.45619 -8.69133 -8.36391 -6.14823 0.17511 0.39343 1.24382 1.41112 1.44599 1.55696 1.56941 2.21101 2.26202 2.75918 2.97556 3.19606 3.29941 3.52159 3.71044 3.77144 3.90770 3.98265 4.04262 4.08633 4.16629 4.20813 4.26456 4.41720 4.45994 4.48602 4.56583 4.63848 4.71772 4.74256 4.80073 4.85750 4.93544 4.97704 5.03569 5.25566 5.27956 5.30319 5.35008 5.39737 5.40279 5.41807 5.63747 5.84020 5.92571 6.18021 6.23638 6.39273 7.04586 7.11415 7.17464 8.73035 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.002735 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.450175 B =10236.299628 C =12119.215213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.089 3.911 4 H 0.107 0.893 5 C 0.085 3.915 6 N -0.711 5.711 7 C 0.536 3.464 8 O -0.565 6.565 9 C -0.128 4.128 10 S -0.149 6.149 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.259 1.259 19 N -0.655 5.655 20 C 0.105 3.895 21 C 0.106 3.894 22 N -0.511 5.511 23 C 0.069 3.931 24 C -0.166 4.166 25 C -0.086 4.086 26 C -0.120 4.120 27 C -0.105 4.105 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.340 0.660 40 H 0.107 0.893 41 H 0.027 0.973 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.660 -9.298 -8.442 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.021 4.021 4 H 0.125 0.875 5 C -0.041 4.041 6 N -0.365 5.365 7 C 0.322 3.678 8 O -0.443 6.443 9 C -0.280 4.280 10 S 0.079 5.921 11 C -0.694 4.694 12 H 0.099 0.901 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.183 1.183 19 N -0.286 5.286 20 C -0.024 4.024 21 C -0.032 4.032 22 N -0.221 5.221 23 C -0.087 4.087 24 C -0.185 4.185 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.162 4.162 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.246 0.754 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.046 0.954 42 H 0.178 0.822 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.057 -10.960 -7.764 31.106 hybrid contribution 0.138 2.504 -0.729 2.612 sum -27.918 -8.456 -8.493 30.382 Atomic orbital electron populations 1.21625 0.93756 1.01654 1.02537 1.21513 0.97739 0.93196 1.02573 1.21957 0.88886 0.98196 0.93055 0.87532 1.22207 0.97370 0.82560 1.01924 1.45675 1.05878 1.10405 1.74536 1.20020 0.82827 0.89810 0.75187 1.90684 1.56914 1.47051 1.49635 1.23348 1.01247 0.97068 1.06300 1.85534 0.98994 1.12032 1.95582 1.23189 0.96058 0.92305 1.57886 0.90076 1.26147 0.94634 1.04610 0.93780 1.70180 0.99918 1.37169 1.47525 0.84940 0.77981 0.76030 0.78940 1.19143 1.20170 1.18272 1.60736 1.59632 1.07405 1.00796 1.20865 0.96163 0.98824 0.86557 1.21147 0.92431 0.92959 0.96648 1.67451 1.31535 1.08010 1.15095 1.23024 0.95958 0.98885 0.90870 1.22438 0.95985 0.98250 1.01868 1.21886 0.99751 0.94332 0.95158 1.20991 0.96068 0.99382 0.95777 1.20822 0.99570 0.93808 1.01960 0.92942 0.91487 0.92469 0.91818 0.90857 0.91631 0.92735 0.75419 0.87898 0.87284 0.91941 0.84141 0.87531 0.95450 0.82226 0.82261 0.82086 0.89716 0.90182 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.84 71.98 0.71 -0.65 16 2 C -0.11 -1.34 5.30 30.59 0.16 -1.17 16 3 C 0.09 1.31 2.72 44.91 0.12 1.43 16 4 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 5 C 0.08 1.92 4.47 86.38 0.39 2.31 16 6 N -0.71 -19.04 5.33 -463.05 -2.47 -21.51 16 7 C 0.54 20.92 7.85 87.66 0.69 21.61 16 8 O -0.56 -27.32 15.86 -3.03 -0.05 -27.37 16 9 C -0.13 -5.40 6.16 71.24 0.44 -4.97 16 10 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 11 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16 15 Si 1.00 44.50 29.55 68.60 2.03 46.53 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 N -0.66 -10.19 5.67 -495.60 -2.81 -13.00 16 20 C 0.10 2.01 4.76 85.56 0.41 2.42 16 21 C 0.11 2.24 6.29 42.54 0.27 2.51 16 22 N -0.51 -13.01 10.27 -183.88 -1.89 -14.90 16 23 C 0.07 1.43 11.18 84.69 0.95 2.38 16 24 C -0.17 -2.45 10.11 22.36 0.23 -2.23 16 25 C -0.09 -1.15 9.86 22.47 0.22 -0.93 16 26 C -0.12 -1.91 5.90 -19.77 -0.12 -2.02 16 27 C -0.10 -1.05 9.62 71.24 0.69 -0.36 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.71 7.51 -2.39 -0.02 0.69 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.79 6.35 -2.39 -0.02 0.77 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.05 1.44 6.64 -2.38 -0.02 1.42 16 35 H 0.41 8.63 7.23 -92.71 -0.67 7.96 16 36 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 37 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.34 5.84 7.44 -89.69 -0.67 5.17 16 40 H 0.11 1.69 4.17 -2.39 -0.01 1.68 16 41 H 0.03 0.71 6.29 -2.38 -0.02 0.69 16 42 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.08 0.77 8.03 -2.39 -0.02 0.75 16 46 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 47 H 0.07 0.73 5.96 -2.39 -0.01 0.71 16 Total: -1.00 -80.63 395.83 -0.15 -80.78 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.34 Total: 25.89 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 6.25 Total: -9.93 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -6.88 Total: -106.19 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -80.63 -0.15 -80.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732190872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.539 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds