Wall clock time and date at job start Tue Mar 31 2020 19:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47140 * 176.59562 * 3 2 1 5 5 C 1.47843 * 110.99754 * 49.15686 * 4 3 2 6 6 C 1.54911 * 104.79421 * 146.36724 * 5 4 3 7 7 C 1.55139 * 101.65459 * 322.92606 * 6 5 4 8 8 H 1.08996 * 110.85804 * 277.20525 * 7 6 5 9 9 N 1.46895 * 110.70545 * 154.03752 * 7 6 5 10 10 C 1.46949 * 110.96948 * 58.34779 * 9 7 6 11 11 C 1.53239 * 109.31291 * 187.06156 * 10 9 7 12 12 N 1.47085 * 108.68211 * 306.47354 * 11 10 9 13 13 C 1.34774 * 120.87823 * 231.10559 * 12 11 10 14 14 O 1.21279 * 120.00349 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00057 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47405 * 180.02562 * 15 13 12 17 17 C 1.76196 * 99.99957 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00134 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00260 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46939 * 60.00362 * 21 19 17 23 23 H 1.48498 * 109.47058 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47129 * 299.99985 * 21 19 17 25 25 C 1.47071 * 118.23748 * 51.08445 * 12 11 10 26 26 C 1.46899 * 110.99922 * 182.85710 * 9 7 6 27 27 C 1.47443 * 111.00157 * 170.00015 * 4 3 2 28 28 H 4.40888 * 5.52174 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47254 * 56.59839 * 3 2 1 30 30 H 1.09000 * 109.47440 * 296.59433 * 3 2 1 31 31 H 1.09004 * 110.37056 * 265.18992 * 5 4 3 32 32 H 1.08999 * 110.37887 * 27.42384 * 5 4 3 33 33 H 1.09005 * 110.98624 * 204.83457 * 6 5 4 34 34 H 1.08999 * 110.99060 * 81.02560 * 6 5 4 35 35 H 1.08998 * 109.34467 * 67.21522 * 10 9 7 36 36 H 1.09003 * 109.67188 * 307.11355 * 10 9 7 37 37 H 1.08999 * 109.63008 * 186.66134 * 11 10 9 38 38 H 1.09002 * 109.62500 * 66.27666 * 11 10 9 39 39 H 1.09009 * 109.46847 * 300.00068 * 15 13 12 40 40 H 1.09001 * 109.47002 * 59.99572 * 15 13 12 41 41 H 0.96999 * 120.00326 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.63091 * 68.52696 * 25 12 11 43 43 H 1.09003 * 109.63080 * 188.91406 * 25 12 11 44 44 H 1.09002 * 109.49718 * 52.78102 * 26 9 7 45 45 H 1.09005 * 109.51460 * 292.71718 * 26 9 7 46 46 H 1.08998 * 109.88620 * 117.33921 * 27 4 3 47 47 H 1.09000 * 110.02171 * 356.22185 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3834 -0.0822 5 6 2.4602 2.2441 0.9126 6 6 3.5345 3.2767 1.3359 7 6 4.8205 2.4089 1.3361 8 1 4.9157 1.8565 2.2708 9 7 6.0085 3.2408 1.1031 10 6 6.1266 4.2876 2.1276 11 6 7.2695 5.2371 1.7527 12 7 8.4866 4.4429 1.5263 13 6 9.6438 4.7603 2.1400 14 8 9.6910 5.7115 2.8909 15 6 10.8789 3.9326 1.8941 16 16 12.2576 4.6059 2.8542 17 6 13.5315 3.4801 2.3913 18 1 13.3176 2.6761 1.7026 19 6 14.8099 3.6265 2.9117 20 7 15.0704 4.6061 3.7515 21 14 16.1603 2.4326 2.4215 22 1 16.3626 2.4906 0.9514 23 1 17.4229 2.8037 3.1094 24 1 15.7690 1.0547 2.8134 25 6 8.4073 3.2930 0.6128 26 6 7.2229 2.4170 1.0346 27 6 4.5892 1.4445 0.1536 28 1 -1.0502 -0.0004 0.0002 29 1 3.0096 -0.5649 -0.8579 30 1 3.0096 -0.4592 0.9189 31 1 1.6062 2.7487 0.4606 32 1 2.1403 1.6532 1.7708 33 1 3.3280 3.6690 2.3317 34 1 3.6084 4.0842 0.6075 35 1 6.3385 3.8265 3.0922 36 1 5.1936 4.8479 2.1889 37 1 7.4394 5.9442 2.5646 38 1 7.0116 5.7792 0.8430 39 1 10.6928 2.9028 2.1992 40 1 11.1278 3.9578 0.8332 41 1 15.9639 4.7087 4.1149 42 1 8.2568 3.6456 -0.4075 43 1 9.3308 2.7166 0.6685 44 1 7.0813 1.6203 0.3042 45 1 7.4231 1.9814 2.0135 46 1 5.0936 1.8213 -0.7362 47 1 4.9687 0.4538 0.4034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733395677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:10 Heat of formation + Delta-G solvation = 48.088011 kcal Electronic energy + Delta-G solvation = -26375.462663 eV Core-core repulsion = 22686.535574 eV Total energy + Delta-G solvation = -3688.927089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41125 -39.39044 -37.53318 -34.96848 -33.47298 -32.43623 -31.76991 -31.19172 -29.32808 -28.88476 -26.87288 -25.58223 -25.37923 -23.85195 -21.80161 -21.32969 -20.62301 -19.07222 -18.61423 -17.77363 -17.04462 -16.44567 -16.24246 -15.66264 -15.42225 -15.21939 -15.16238 -14.81243 -14.77099 -14.43709 -14.04336 -13.96703 -13.74018 -13.20090 -13.01582 -12.76773 -12.69890 -12.52728 -12.41179 -11.95007 -11.83933 -11.71688 -11.43320 -11.30213 -11.19949 -11.05092 -11.04701 -10.99545 -10.91016 -10.76733 -10.65561 -9.82206 -9.36652 -9.06794 -8.92307 -8.73461 -8.40706 -8.23876 -6.51122 -6.22180 -3.93053 2.26143 2.41522 2.89444 3.03816 3.22639 3.24016 3.28139 3.42227 3.60158 3.70729 3.84763 4.14888 4.19639 4.32984 4.58804 4.65623 4.77330 4.85412 4.88456 4.95135 4.98108 5.03807 5.07808 5.11675 5.12981 5.17867 5.25939 5.37432 5.43526 5.47758 5.49204 5.52843 5.56426 5.63147 5.72271 5.74819 5.80473 5.85973 5.94654 6.09815 6.43686 6.50251 6.57628 6.70954 6.73352 7.18077 7.56181 7.58680 8.34056 8.54986 9.22830 10.85155 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.001989 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.700043 B =14076.186022 C =15038.370260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.156 3.844 4 N -0.521 5.521 5 C 0.046 3.954 6 C -0.122 4.122 7 C 0.063 3.937 8 H 0.048 0.952 9 N -0.525 5.525 10 C 0.043 3.957 11 C 0.119 3.881 12 N -0.622 5.622 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.114 3.886 26 C 0.039 3.961 27 C 0.050 3.950 28 H 0.218 0.782 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.096 0.904 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.574 -8.451 -7.982 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.029 3.971 4 N -0.246 5.246 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.047 4.047 8 H 0.066 0.934 9 N -0.250 5.250 10 C -0.086 4.086 11 C -0.004 4.004 12 N -0.359 5.359 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.010 4.010 26 C -0.090 4.090 27 C -0.078 4.078 28 H 0.235 0.765 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.480 -6.537 -7.693 29.275 hybrid contribution 0.827 -2.754 0.379 2.900 sum -26.652 -9.291 -7.314 29.158 Atomic orbital electron populations 1.24931 0.95923 0.99286 1.01130 1.22821 0.94213 1.01154 1.00391 1.19323 0.84935 0.90925 1.01909 1.63780 1.04124 1.07375 1.49298 1.23002 0.97479 0.94317 0.93405 1.22806 0.92721 0.98340 1.02155 1.22853 0.90823 0.94046 0.96949 0.93377 1.61980 1.01904 1.13381 1.47756 1.22522 0.99470 0.93782 0.92813 1.21582 0.82834 0.93484 1.02535 1.48155 1.09746 1.30966 1.47032 1.20338 0.83591 0.84707 0.79046 1.90689 1.84108 1.28713 1.35688 1.23548 0.98243 1.02417 1.05878 1.85408 0.98903 1.41050 1.58035 1.22819 0.96397 1.16388 1.32832 0.90993 1.24989 0.97953 0.95987 0.94605 1.70007 1.21824 1.29698 1.28726 0.86229 0.80002 0.80514 0.78786 1.19914 1.20803 1.19961 1.21783 0.98275 0.87175 0.93729 1.22530 0.89789 0.95637 1.01008 1.22917 0.87840 0.98160 0.98864 0.76527 0.88206 0.92336 0.89945 0.93496 0.90818 0.89158 0.94340 0.89415 0.88621 0.91052 0.89403 0.89205 0.92123 0.90616 0.88881 0.89411 0.94151 0.88562 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 19.25 29.55 0.57 -0.73 16 2 C -0.19 -1.45 12.10 -37.12 -0.45 -1.90 16 3 C 0.16 1.06 5.33 -6.61 -0.04 1.02 16 4 N -0.52 -4.01 5.30 -234.74 -1.24 -5.25 16 5 C 0.05 0.33 5.63 -2.30 -0.01 0.32 16 6 C -0.12 -0.85 5.26 -24.59 -0.13 -0.98 16 7 C 0.06 0.48 2.65 -65.89 -0.17 0.31 16 8 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 9 N -0.53 -4.68 4.44 -224.12 -1.00 -5.68 16 10 C 0.04 0.42 5.46 -3.67 -0.02 0.40 16 11 C 0.12 1.45 6.59 -3.60 -0.02 1.42 16 12 N -0.62 -8.88 3.01 -172.47 -0.52 -9.40 16 13 C 0.54 10.21 7.73 -10.99 -0.08 10.12 16 14 O -0.52 -11.87 15.31 5.56 0.09 -11.79 16 15 C -0.15 -3.04 4.52 36.00 0.16 -2.88 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 21 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.11 1.24 6.50 -3.61 -0.02 1.22 16 26 C 0.04 0.35 5.48 -3.70 -0.02 0.33 16 27 C 0.05 0.35 5.36 -2.83 -0.02 0.34 16 28 H 0.22 0.73 7.80 -54.08 -0.42 0.31 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.35 7.96 -51.93 -0.41 -0.06 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.34 7.54 -51.93 -0.39 -0.05 16 33 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.71 6.73 -51.93 -0.35 0.36 16 37 H 0.10 1.32 7.06 -51.93 -0.37 0.95 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.64 7.67 -51.91 -0.40 1.24 16 40 H 0.09 1.68 8.00 -51.92 -0.42 1.27 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.01 6.02 -51.93 -0.31 0.70 16 44 H 0.09 0.63 6.93 -51.93 -0.36 0.27 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.76 7.84 -51.93 -0.41 0.35 16 47 H 0.06 0.35 7.50 -51.93 -0.39 -0.04 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -34.44 389.80 -10.92 -45.37 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.56 Total: -2.27 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.06 Total: -3.90 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -2.03 Total: -45.69 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.44 -10.92 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.454 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds