Wall clock time and date at job start Tue Mar 31 2020 19:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47140 * 176.59562 * 3 2 1 5 5 C 1.47843 * 110.99754 * 49.15686 * 4 3 2 6 6 C 1.54911 * 104.79421 * 146.36724 * 5 4 3 7 7 C 1.55139 * 101.65459 * 322.92606 * 6 5 4 8 8 H 1.08996 * 110.85804 * 277.20525 * 7 6 5 9 9 N 1.46895 * 110.70545 * 154.03752 * 7 6 5 10 10 C 1.46949 * 110.96948 * 58.34779 * 9 7 6 11 11 C 1.53239 * 109.31291 * 187.06156 * 10 9 7 12 12 N 1.47085 * 108.68211 * 306.47354 * 11 10 9 13 13 C 1.34774 * 120.87823 * 231.10559 * 12 11 10 14 14 O 1.21279 * 120.00349 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00057 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47405 * 180.02562 * 15 13 12 17 17 C 1.76196 * 99.99957 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00134 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00260 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46939 * 60.00362 * 21 19 17 23 23 H 1.48498 * 109.47058 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47129 * 299.99985 * 21 19 17 25 25 C 1.47071 * 118.23748 * 51.08445 * 12 11 10 26 26 C 1.46899 * 110.99922 * 182.85710 * 9 7 6 27 27 C 1.47443 * 111.00157 * 170.00015 * 4 3 2 28 28 H 4.40888 * 5.52174 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47254 * 56.59839 * 3 2 1 30 30 H 1.09000 * 109.47440 * 296.59433 * 3 2 1 31 31 H 1.09004 * 110.37056 * 265.18992 * 5 4 3 32 32 H 1.08999 * 110.37887 * 27.42384 * 5 4 3 33 33 H 1.09005 * 110.98624 * 204.83457 * 6 5 4 34 34 H 1.08999 * 110.99060 * 81.02560 * 6 5 4 35 35 H 1.08998 * 109.34467 * 67.21522 * 10 9 7 36 36 H 1.09003 * 109.67188 * 307.11355 * 10 9 7 37 37 H 1.08999 * 109.63008 * 186.66134 * 11 10 9 38 38 H 1.09002 * 109.62500 * 66.27666 * 11 10 9 39 39 H 1.09009 * 109.46847 * 300.00068 * 15 13 12 40 40 H 1.09001 * 109.47002 * 59.99572 * 15 13 12 41 41 H 0.96999 * 120.00326 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.63091 * 68.52696 * 25 12 11 43 43 H 1.09003 * 109.63080 * 188.91406 * 25 12 11 44 44 H 1.09002 * 109.49718 * 52.78102 * 26 9 7 45 45 H 1.09005 * 109.51460 * 292.71718 * 26 9 7 46 46 H 1.08998 * 109.88620 * 117.33921 * 27 4 3 47 47 H 1.09000 * 110.02171 * 356.22185 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3834 -0.0822 5 6 2.4602 2.2441 0.9126 6 6 3.5345 3.2767 1.3359 7 6 4.8205 2.4089 1.3361 8 1 4.9157 1.8565 2.2708 9 7 6.0085 3.2408 1.1031 10 6 6.1266 4.2876 2.1276 11 6 7.2695 5.2371 1.7527 12 7 8.4866 4.4429 1.5263 13 6 9.6438 4.7603 2.1400 14 8 9.6910 5.7115 2.8909 15 6 10.8789 3.9326 1.8941 16 16 12.2576 4.6059 2.8542 17 6 13.5315 3.4801 2.3913 18 1 13.3176 2.6761 1.7026 19 6 14.8099 3.6265 2.9117 20 7 15.0704 4.6061 3.7515 21 14 16.1603 2.4326 2.4215 22 1 16.3626 2.4906 0.9514 23 1 17.4229 2.8037 3.1094 24 1 15.7690 1.0547 2.8134 25 6 8.4073 3.2930 0.6128 26 6 7.2229 2.4170 1.0346 27 6 4.5892 1.4445 0.1536 28 1 -1.0502 -0.0004 0.0002 29 1 3.0096 -0.5649 -0.8579 30 1 3.0096 -0.4592 0.9189 31 1 1.6062 2.7487 0.4606 32 1 2.1403 1.6532 1.7708 33 1 3.3280 3.6690 2.3317 34 1 3.6084 4.0842 0.6075 35 1 6.3385 3.8265 3.0922 36 1 5.1936 4.8479 2.1889 37 1 7.4394 5.9442 2.5646 38 1 7.0116 5.7792 0.8430 39 1 10.6928 2.9028 2.1992 40 1 11.1278 3.9578 0.8332 41 1 15.9639 4.7087 4.1149 42 1 8.2568 3.6456 -0.4075 43 1 9.3308 2.7166 0.6685 44 1 7.0813 1.6203 0.3042 45 1 7.4231 1.9814 2.0135 46 1 5.0936 1.8213 -0.7362 47 1 4.9687 0.4538 0.4034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733395677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:09 Heat of formation + Delta-G solvation = 23.723741 kcal Electronic energy + Delta-G solvation = -26376.519177 eV Core-core repulsion = 22686.535574 eV Total energy + Delta-G solvation = -3689.983603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35224 -40.35646 -38.53251 -35.90013 -34.58347 -34.17326 -32.71878 -31.88030 -30.56299 -29.67957 -27.81442 -27.48638 -26.19866 -24.72509 -22.78167 -21.94509 -21.32726 -20.36236 -19.53343 -19.09137 -18.31785 -17.15736 -17.02731 -16.97944 -16.87048 -16.64925 -15.96098 -15.93690 -15.75603 -15.42430 -15.12807 -14.74816 -14.68315 -14.53268 -14.47455 -13.80357 -13.54717 -13.33252 -13.31757 -13.17443 -13.08358 -12.86530 -12.66301 -12.61760 -12.45111 -12.22113 -12.01871 -11.87659 -11.74685 -11.67030 -11.44743 -11.16312 -11.12679 -10.89080 -10.27172 -9.87345 -9.40228 -9.26582 -8.67797 -8.34226 -6.13007 1.24781 1.44253 1.45517 1.54987 1.55301 1.74485 1.90452 2.06337 2.27615 2.71287 2.99834 3.16179 3.24449 3.35550 3.60510 3.63379 3.76562 3.90751 3.99476 4.05920 4.21139 4.23465 4.28581 4.31051 4.33058 4.37663 4.43469 4.45189 4.56585 4.59524 4.63905 4.73627 4.82311 4.84594 4.90053 4.95191 5.02901 5.04667 5.11132 5.18779 5.41562 5.48263 5.89134 5.93816 5.99107 6.01935 6.19642 6.29400 6.68794 7.06705 7.11332 8.74733 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023353 B = 0.001989 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.700043 B =14076.186022 C =15038.370260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.219 4.219 3 C 0.155 3.845 4 N -0.533 5.533 5 C 0.050 3.950 6 C -0.117 4.117 7 C 0.065 3.935 8 H 0.045 0.955 9 N -0.524 5.524 10 C 0.053 3.947 11 C 0.116 3.884 12 N -0.610 5.610 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.123 4.123 16 S -0.153 6.153 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.261 1.261 25 C 0.107 3.893 26 C 0.044 3.956 27 C 0.055 3.945 28 H 0.243 0.757 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.025 0.975 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.030 0.970 46 H 0.092 0.908 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.889 -10.690 -9.802 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.220 4.220 3 C 0.028 3.972 4 N -0.257 5.257 5 C -0.078 4.078 6 C -0.155 4.155 7 C -0.044 4.044 8 H 0.063 0.937 9 N -0.249 5.249 10 C -0.076 4.076 11 C -0.006 4.006 12 N -0.344 5.344 13 C 0.321 3.679 14 O -0.446 6.446 15 C -0.274 4.274 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.015 4.015 26 C -0.085 4.085 27 C -0.073 4.073 28 H 0.260 0.740 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.851 -8.809 -9.552 31.642 hybrid contribution 1.034 -2.064 0.875 2.469 sum -27.818 -10.873 -8.677 31.102 Atomic orbital electron populations 1.25695 0.96833 0.98177 1.00130 1.23274 0.95049 1.02225 1.01408 1.19377 0.84695 0.90554 1.02546 1.63763 1.04405 1.07987 1.49570 1.22936 0.97352 0.94241 0.93251 1.22768 0.92280 0.98021 1.02445 1.22850 0.90325 0.94077 0.97144 0.93664 1.61995 1.02314 1.13470 1.47119 1.22413 0.99156 0.93744 0.92287 1.21733 0.82555 0.93767 1.02577 1.48177 1.08776 1.31539 1.45955 1.20151 0.84553 0.84066 0.79176 1.90671 1.84977 1.30771 1.38194 1.23358 0.95849 1.02863 1.05315 1.85605 1.02910 1.43244 1.60790 1.23166 0.96760 1.16477 1.33013 0.89800 1.26135 1.00793 0.97893 0.94289 1.70181 1.22531 1.31888 1.30170 0.85005 0.76133 0.77997 0.78872 1.18586 1.20469 1.18593 1.22091 0.99436 0.86240 0.93758 1.22519 0.89046 0.95695 1.01203 1.22868 0.87651 0.98548 0.98241 0.74037 0.87489 0.91708 0.90398 0.93591 0.90058 0.89628 0.95708 0.87380 0.90668 0.89549 0.87525 0.87338 0.92007 0.88846 0.88617 0.86803 0.95196 0.88979 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 19.25 74.32 1.43 -0.80 16 2 C -0.22 -3.13 12.10 31.13 0.38 -2.75 16 3 C 0.15 1.85 5.33 84.50 0.45 2.30 16 4 N -0.53 -7.19 5.30 -896.59 -4.75 -11.94 16 5 C 0.05 0.64 5.63 86.77 0.49 1.13 16 6 C -0.12 -1.39 5.26 31.98 0.17 -1.23 16 7 C 0.07 0.85 2.65 46.10 0.12 0.97 16 8 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 9 N -0.52 -8.07 4.44 -862.99 -3.84 -11.90 16 10 C 0.05 0.94 5.46 86.37 0.47 1.41 16 11 C 0.12 2.72 6.59 86.35 0.57 3.29 16 12 N -0.61 -16.74 3.01 -817.96 -2.46 -19.21 16 13 C 0.53 20.42 7.73 87.66 0.68 21.09 16 14 O -0.57 -26.99 15.31 -3.03 -0.05 -27.04 16 15 C -0.12 -4.93 4.52 71.24 0.32 -4.61 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.55 -31.11 9.50 67.96 0.65 -30.46 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 21 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.11 2.06 6.50 86.35 0.56 2.63 16 26 C 0.04 0.68 5.48 86.38 0.47 1.15 16 27 C 0.05 0.64 5.36 86.65 0.46 1.10 16 28 H 0.24 1.09 7.80 -4.41 -0.03 1.05 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 0.67 7.96 -2.39 -0.02 0.65 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.59 7.54 -2.39 -0.02 0.58 16 33 H 0.08 0.85 7.93 -2.38 -0.02 0.83 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 1.52 6.73 -2.39 -0.02 1.50 16 37 H 0.07 2.11 7.06 -2.39 -0.02 2.09 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 3.86 7.67 -2.39 -0.02 3.84 16 40 H 0.11 3.93 8.00 -2.39 -0.02 3.91 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 1.82 6.02 -2.39 -0.01 1.80 16 44 H 0.11 1.23 6.93 -2.39 -0.02 1.21 16 45 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.09 1.19 7.84 -2.39 -0.02 1.17 16 47 H 0.07 0.65 7.50 -2.39 -0.02 0.63 16 Total: -1.00 -77.04 389.80 -1.31 -78.36 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.94 Total: 15.38 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 7.69 Total: -3.52 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -10.76 Total: -98.81 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -77.04 -1.31 -78.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.081 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds