Wall clock time and date at job start Tue Mar 31 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46844 * 270.77734 * 3 2 1 5 5 C 1.47892 * 111.00424 * 290.12986 * 4 3 2 6 6 C 1.54000 * 107.06067 * 145.84523 * 5 4 3 7 7 C 1.54602 * 105.13740 * 358.77674 * 6 5 4 8 8 H 1.08998 * 110.72342 * 96.57747 * 7 6 5 9 9 N 1.46902 * 110.72249 * 219.68730 * 7 6 5 10 10 C 1.46901 * 110.99821 * 181.24983 * 9 7 6 11 11 C 1.53234 * 109.33797 * 187.25114 * 10 9 7 12 12 N 1.47083 * 108.52012 * 306.16825 * 11 10 9 13 13 C 1.34781 * 120.87787 * 231.18668 * 12 11 10 14 14 O 1.21272 * 120.00567 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99614 * 180.02562 * 13 12 11 16 16 S 1.80991 * 109.47211 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00237 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00306 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00410 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99960 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47372 * 90.00218 * 21 19 17 23 23 H 1.48501 * 109.47092 * 330.00107 * 21 19 17 24 24 H 1.48503 * 109.47320 * 210.00649 * 21 19 17 25 25 C 1.47070 * 118.23667 * 51.46407 * 12 11 10 26 26 C 1.46896 * 110.99788 * 305.54775 * 9 7 6 27 27 C 1.48736 * 111.04333 * 47.71340 * 4 3 2 28 28 H 4.40884 * 5.52168 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46744 * 150.78476 * 3 2 1 30 30 H 1.08992 * 109.47280 * 30.78266 * 3 2 1 31 31 H 1.09002 * 109.91977 * 26.49534 * 5 4 3 32 32 H 1.08997 * 110.08807 * 265.28848 * 5 4 3 33 33 H 1.08998 * 110.30919 * 239.86310 * 6 5 4 34 34 H 1.08997 * 110.39045 * 117.73198 * 6 5 4 35 35 H 1.08999 * 109.49036 * 67.29042 * 10 9 7 36 36 H 1.08998 * 109.49392 * 307.21609 * 10 9 7 37 37 H 1.09002 * 109.62620 * 186.46171 * 11 10 9 38 38 H 1.08996 * 109.63161 * 65.88309 * 11 10 9 39 39 H 1.09004 * 109.47236 * 59.99657 * 15 13 12 40 40 H 1.09001 * 109.46781 * 300.00371 * 15 13 12 41 41 H 0.97002 * 120.00352 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.63314 * 68.24482 * 25 12 11 43 43 H 1.09003 * 109.62836 * 188.83048 * 25 12 11 44 44 H 1.08998 * 109.49669 * 292.71482 * 26 9 7 45 45 H 1.09003 * 109.49339 * 52.79142 * 26 9 7 46 46 H 1.08995 * 110.84132 * 81.95682 * 27 4 3 47 47 H 1.08999 * 110.57769 * 318.76216 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.0179 1.3849 5 6 2.8637 1.2692 2.0606 6 6 2.5700 0.9506 3.5383 7 6 2.6617 -0.5890 3.6453 8 1 3.6471 -0.8932 3.9980 9 7 1.6110 -1.1121 4.5288 10 6 1.7108 -2.5720 4.6583 11 6 0.4984 -3.0966 5.4348 12 7 0.4059 -2.3643 6.7070 13 6 0.2940 -3.0228 7.8776 14 8 0.2689 -4.2352 7.8915 15 6 0.2000 -2.2524 9.1694 16 16 0.0609 -3.4102 10.5536 17 6 -0.0310 -2.2727 11.8961 18 1 0.0056 -1.2100 11.7068 19 6 -0.1494 -2.7422 13.1968 20 7 -0.2176 -1.8925 14.1997 21 14 -0.2120 -4.5803 13.5242 22 1 1.1663 -5.0940 13.7284 23 1 -0.8300 -5.2692 12.3629 24 1 -1.0221 -4.8390 14.7416 25 6 0.4325 -0.8943 6.6672 26 6 1.6535 -0.4565 5.8426 27 6 2.4334 -1.0561 2.1857 28 1 -1.0500 -0.0002 0.0000 29 1 3.0088 0.8978 -0.5016 30 1 3.0097 -0.8820 -0.5259 31 1 1.9986 1.7519 1.6059 32 1 3.7338 1.9216 1.9873 33 1 1.5695 1.2896 3.8069 34 1 3.3134 1.4195 4.1829 35 1 2.6247 -2.8280 5.1944 36 1 1.7314 -3.0245 3.6669 37 1 0.6234 -4.1611 5.6333 38 1 -0.4081 -2.9340 4.8519 39 1 -0.6786 -1.6076 9.1449 40 1 1.0947 -1.6426 9.2947 41 1 -0.3007 -2.2206 15.1088 42 1 -0.4802 -0.5240 6.2004 43 1 0.5139 -0.5020 7.6809 44 1 2.5681 -0.7419 6.3622 45 1 1.6324 0.6252 5.7102 46 1 2.8774 -2.0381 2.0222 47 1 1.3698 -1.0691 1.9478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733395682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:13 Heat of formation + Delta-G solvation = 48.504836 kcal Electronic energy + Delta-G solvation = -26691.397107 eV Core-core repulsion = 23002.488092 eV Total energy + Delta-G solvation = -3688.909014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44064 -39.46845 -37.61960 -34.99528 -33.44423 -32.44716 -31.87237 -30.86441 -29.82564 -28.64484 -27.00057 -25.66433 -25.37477 -23.88344 -21.84710 -21.40896 -20.55928 -19.12889 -18.59102 -17.78173 -17.13261 -16.45515 -16.24729 -15.71145 -15.49445 -15.28658 -15.07611 -14.95933 -14.71920 -14.33558 -14.19240 -13.96396 -13.83336 -13.37039 -13.28595 -12.81461 -12.64285 -12.51234 -12.21023 -12.02980 -11.97293 -11.75406 -11.52096 -11.28657 -11.26738 -11.11587 -11.01779 -10.99983 -10.80173 -10.59211 -10.52508 -9.86436 -9.48110 -9.09017 -9.01297 -8.87525 -8.50053 -8.45807 -6.92948 -6.29735 -4.01540 2.32194 2.40980 2.68523 2.91843 3.14598 3.32347 3.35400 3.50151 3.58412 3.78898 3.98510 4.13135 4.28732 4.32335 4.52259 4.65363 4.69816 4.80661 4.86951 4.93038 5.02454 5.05452 5.08501 5.09137 5.10953 5.18576 5.24880 5.30292 5.38022 5.45749 5.48241 5.50175 5.55320 5.62562 5.66942 5.69008 5.72099 5.74950 5.89202 5.97330 6.27764 6.42482 6.50474 6.72057 6.74697 7.17635 7.46888 7.93219 8.40337 8.42547 9.16494 10.79400 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.002110 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.819387 B =13266.222798 C =13684.340136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C 0.151 3.849 4 N -0.508 5.508 5 C 0.036 3.964 6 C -0.126 4.126 7 C 0.080 3.920 8 H 0.057 0.943 9 N -0.530 5.530 10 C 0.042 3.958 11 C 0.120 3.880 12 N -0.620 5.620 13 C 0.534 3.466 14 O -0.520 6.520 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.274 1.274 25 C 0.113 3.887 26 C 0.039 3.961 27 C 0.040 3.960 28 H 0.216 0.784 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.271 0.729 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 7.288 -29.230 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.225 4.225 3 C 0.024 3.976 4 N -0.230 5.230 5 C -0.092 4.092 6 C -0.164 4.164 7 C -0.029 4.029 8 H 0.075 0.925 9 N -0.255 5.255 10 C -0.086 4.086 11 C -0.003 4.003 12 N -0.357 5.357 13 C 0.322 3.678 14 O -0.394 6.394 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.199 1.199 25 C -0.011 4.011 26 C -0.090 4.090 27 C -0.088 4.088 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.351 5.522 -29.228 30.223 hybrid contribution -0.302 0.893 0.724 1.188 sum 5.049 6.415 -28.505 29.650 Atomic orbital electron populations 1.25091 0.96130 1.00671 0.98722 1.24120 0.95766 1.00879 1.01783 1.19594 0.82407 1.03956 0.91666 1.65084 1.52260 1.04581 1.01064 1.22866 1.00697 0.91970 0.93683 1.22508 1.02799 0.94982 0.96145 1.22502 0.93215 0.94605 0.92582 0.92488 1.62022 1.46668 1.04791 1.12011 1.22509 0.97951 0.87656 1.00529 1.21597 0.97509 0.97641 0.83598 1.48131 1.74757 1.06760 1.06032 1.20305 0.75157 0.88012 0.84359 1.90683 1.48579 1.13769 1.86411 1.23300 1.05451 1.02993 0.95410 1.84801 1.96579 1.12143 0.98118 1.22303 1.58313 0.94766 0.91442 0.89398 1.24712 0.93207 0.98493 0.94913 1.69935 1.47743 1.34591 0.99391 0.86735 0.79696 0.85340 0.80083 1.19222 1.15923 1.19933 1.21923 0.98157 0.79897 1.01078 1.22615 0.97857 0.99674 0.88832 1.23356 0.98632 0.95404 0.91363 0.76756 0.88493 0.88201 0.93116 0.90028 0.90080 0.90835 0.94060 0.89680 0.88593 0.91101 0.88488 0.88656 0.91939 0.90604 0.88777 0.93936 0.89267 0.90117 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 19.02 29.55 0.56 -0.80 16 2 C -0.22 -1.71 10.33 -37.12 -0.38 -2.10 16 3 C 0.15 0.94 6.00 -6.61 -0.04 0.90 16 4 N -0.51 -3.72 5.53 -233.78 -1.29 -5.01 16 5 C 0.04 0.24 6.46 -2.76 -0.02 0.23 16 6 C -0.13 -0.89 5.30 -25.37 -0.13 -1.02 16 7 C 0.08 0.65 2.75 -65.85 -0.18 0.47 16 8 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 9 N -0.53 -4.79 4.47 -223.82 -1.00 -5.79 16 10 C 0.04 0.41 5.51 -3.70 -0.02 0.39 16 11 C 0.12 1.41 6.60 -3.60 -0.02 1.39 16 12 N -0.62 -8.55 3.00 -172.19 -0.52 -9.06 16 13 C 0.53 9.75 7.73 -10.98 -0.08 9.66 16 14 O -0.52 -11.35 15.31 5.56 0.09 -11.27 16 15 C -0.12 -2.36 4.52 36.01 0.16 -2.20 16 16 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 21 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.11 1.21 6.53 -3.37 -0.02 1.19 16 26 C 0.04 0.36 5.38 -3.46 -0.02 0.34 16 27 C 0.04 0.32 5.02 -1.78 -0.01 0.31 16 28 H 0.22 1.00 7.80 -54.09 -0.42 0.57 16 29 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.36 7.01 -51.93 -0.36 0.00 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.60 7.30 -51.93 -0.38 0.22 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.70 7.01 -51.93 -0.36 0.33 16 37 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.77 7.99 -51.91 -0.41 1.35 16 40 H 0.10 1.73 7.67 -51.91 -0.40 1.33 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.01 6.02 -51.93 -0.31 0.69 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.68 6.33 -51.93 -0.33 0.35 16 46 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 47 H 0.07 0.62 6.10 -51.93 -0.32 0.31 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -33.92 383.91 -10.32 -44.24 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.45 Total: -1.45 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 0.00 Total: -3.20 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -2.04 Total: -45.58 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.92 -10.32 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.745 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds