Wall clock time and date at job start Tue Mar 31 2020 19:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46844 * 270.77734 * 3 2 1 5 5 C 1.47892 * 111.00424 * 290.12986 * 4 3 2 6 6 C 1.54000 * 107.06067 * 145.84523 * 5 4 3 7 7 C 1.54602 * 105.13740 * 358.77674 * 6 5 4 8 8 H 1.08998 * 110.72342 * 96.57747 * 7 6 5 9 9 N 1.46902 * 110.72249 * 219.68730 * 7 6 5 10 10 C 1.46901 * 110.99821 * 181.24983 * 9 7 6 11 11 C 1.53234 * 109.33797 * 187.25114 * 10 9 7 12 12 N 1.47083 * 108.52012 * 306.16825 * 11 10 9 13 13 C 1.34781 * 120.87787 * 231.18668 * 12 11 10 14 14 O 1.21272 * 120.00567 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99614 * 180.02562 * 13 12 11 16 16 S 1.80991 * 109.47211 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00237 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00306 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00410 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99960 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47372 * 90.00218 * 21 19 17 23 23 H 1.48501 * 109.47092 * 330.00107 * 21 19 17 24 24 H 1.48503 * 109.47320 * 210.00649 * 21 19 17 25 25 C 1.47070 * 118.23667 * 51.46407 * 12 11 10 26 26 C 1.46896 * 110.99788 * 305.54775 * 9 7 6 27 27 C 1.48736 * 111.04333 * 47.71340 * 4 3 2 28 28 H 4.40884 * 5.52168 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46744 * 150.78476 * 3 2 1 30 30 H 1.08992 * 109.47280 * 30.78266 * 3 2 1 31 31 H 1.09002 * 109.91977 * 26.49534 * 5 4 3 32 32 H 1.08997 * 110.08807 * 265.28848 * 5 4 3 33 33 H 1.08998 * 110.30919 * 239.86310 * 6 5 4 34 34 H 1.08997 * 110.39045 * 117.73198 * 6 5 4 35 35 H 1.08999 * 109.49036 * 67.29042 * 10 9 7 36 36 H 1.08998 * 109.49392 * 307.21609 * 10 9 7 37 37 H 1.09002 * 109.62620 * 186.46171 * 11 10 9 38 38 H 1.08996 * 109.63161 * 65.88309 * 11 10 9 39 39 H 1.09004 * 109.47236 * 59.99657 * 15 13 12 40 40 H 1.09001 * 109.46781 * 300.00371 * 15 13 12 41 41 H 0.97002 * 120.00352 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.63314 * 68.24482 * 25 12 11 43 43 H 1.09003 * 109.62836 * 188.83048 * 25 12 11 44 44 H 1.08998 * 109.49669 * 292.71482 * 26 9 7 45 45 H 1.09003 * 109.49339 * 52.79142 * 26 9 7 46 46 H 1.08995 * 110.84132 * 81.95682 * 27 4 3 47 47 H 1.08999 * 110.57769 * 318.76216 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.0179 1.3849 5 6 2.8637 1.2692 2.0606 6 6 2.5700 0.9506 3.5383 7 6 2.6617 -0.5890 3.6453 8 1 3.6471 -0.8932 3.9980 9 7 1.6110 -1.1121 4.5288 10 6 1.7108 -2.5720 4.6583 11 6 0.4984 -3.0966 5.4348 12 7 0.4059 -2.3643 6.7070 13 6 0.2940 -3.0228 7.8776 14 8 0.2689 -4.2352 7.8915 15 6 0.2000 -2.2524 9.1694 16 16 0.0609 -3.4102 10.5536 17 6 -0.0310 -2.2727 11.8961 18 1 0.0056 -1.2100 11.7068 19 6 -0.1494 -2.7422 13.1968 20 7 -0.2176 -1.8925 14.1997 21 14 -0.2120 -4.5803 13.5242 22 1 1.1663 -5.0940 13.7284 23 1 -0.8300 -5.2692 12.3629 24 1 -1.0221 -4.8390 14.7416 25 6 0.4325 -0.8943 6.6672 26 6 1.6535 -0.4565 5.8426 27 6 2.4334 -1.0561 2.1857 28 1 -1.0500 -0.0002 0.0000 29 1 3.0088 0.8978 -0.5016 30 1 3.0097 -0.8820 -0.5259 31 1 1.9986 1.7519 1.6059 32 1 3.7338 1.9216 1.9873 33 1 1.5695 1.2896 3.8069 34 1 3.3134 1.4195 4.1829 35 1 2.6247 -2.8280 5.1944 36 1 1.7314 -3.0245 3.6669 37 1 0.6234 -4.1611 5.6333 38 1 -0.4081 -2.9340 4.8519 39 1 -0.6786 -1.6076 9.1449 40 1 1.0947 -1.6426 9.2947 41 1 -0.3007 -2.2206 15.1088 42 1 -0.4802 -0.5240 6.2004 43 1 0.5139 -0.5020 7.6809 44 1 2.5681 -0.7419 6.3622 45 1 1.6324 0.6252 5.7102 46 1 2.8774 -2.0381 2.0222 47 1 1.3698 -1.0691 1.9478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733395682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:12 Heat of formation + Delta-G solvation = 24.410587 kcal Electronic energy + Delta-G solvation = -26692.441912 eV Core-core repulsion = 23002.488092 eV Total energy + Delta-G solvation = -3689.953819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38943 -40.39425 -38.59156 -35.93054 -34.67901 -34.13825 -32.77919 -31.52640 -30.98165 -29.53634 -27.92201 -27.70338 -26.12806 -24.74064 -22.82832 -22.02086 -21.27517 -20.41968 -19.55835 -19.07459 -18.38387 -17.29889 -17.19921 -16.95780 -16.90380 -16.65541 -16.00597 -15.88716 -15.66551 -15.29408 -15.07821 -14.95452 -14.86123 -14.68168 -14.59725 -14.22601 -13.53628 -13.52649 -13.34025 -13.07605 -13.02891 -12.83360 -12.70691 -12.65590 -12.50103 -12.29496 -12.06109 -11.87099 -11.76480 -11.66667 -11.35171 -11.17941 -11.03368 -10.95318 -10.53389 -9.90276 -9.62959 -9.36151 -9.01465 -8.52144 -6.23291 0.95762 1.30520 1.44810 1.48580 1.52687 1.78649 1.88370 2.01413 2.24233 2.61378 2.69460 2.85988 3.20956 3.46888 3.51237 3.53054 3.73162 3.84724 3.96925 4.09480 4.14595 4.19830 4.24774 4.29467 4.35492 4.38652 4.42236 4.50093 4.54723 4.68367 4.73373 4.76380 4.80462 4.83423 4.89477 4.94665 5.00706 5.03474 5.09763 5.16630 5.42424 5.70185 5.71687 5.85390 5.99375 6.03211 6.10743 6.24514 6.66197 6.93012 7.03905 8.60040 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.002110 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.819387 B =13266.222798 C =13684.340136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.241 4.241 3 C 0.149 3.851 4 N -0.513 5.513 5 C 0.037 3.963 6 C -0.122 4.122 7 C 0.081 3.919 8 H 0.050 0.950 9 N -0.528 5.528 10 C 0.051 3.949 11 C 0.118 3.882 12 N -0.608 5.608 13 C 0.534 3.466 14 O -0.563 6.563 15 C -0.105 4.105 16 S -0.177 6.177 17 C -0.527 4.527 18 H 0.064 0.936 19 C 0.046 3.954 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.238 1.238 24 H -0.259 1.259 25 C 0.107 3.893 26 C 0.044 3.956 27 C 0.045 3.955 28 H 0.233 0.767 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.277 0.723 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.032 0.968 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 7.848 -31.122 32.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.243 4.243 3 C 0.022 3.978 4 N -0.235 5.235 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.027 4.027 8 H 0.068 0.932 9 N -0.253 5.253 10 C -0.078 4.078 11 C -0.004 4.004 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.442 6.442 15 C -0.256 4.256 16 S 0.049 5.951 17 C -0.675 4.675 18 H 0.082 0.918 19 C -0.160 4.160 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.162 1.162 24 H -0.183 1.183 25 C -0.015 4.015 26 C -0.085 4.085 27 C -0.083 4.083 28 H 0.250 0.750 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.050 0.950 45 H 0.129 0.871 46 H 0.099 0.901 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.569 6.131 -31.160 32.242 hybrid contribution -0.355 0.860 1.138 1.470 sum 5.213 6.990 -30.022 31.262 Atomic orbital electron populations 1.25707 0.96994 1.00474 0.98358 1.24524 0.96464 1.01161 1.02142 1.19716 0.81866 1.05015 0.91217 1.65101 1.52239 1.04621 1.01541 1.22879 1.00962 0.91864 0.93352 1.22494 1.03007 0.93994 0.96558 1.22493 0.92397 0.95433 0.92408 0.93236 1.62043 1.47092 1.04211 1.11951 1.22412 0.96162 0.88333 1.00861 1.21737 0.99189 0.96723 0.82742 1.48155 1.72551 1.08231 1.05327 1.20032 0.75382 0.87336 0.85049 1.90668 1.51148 1.15348 1.87025 1.23262 1.06906 1.01748 0.93680 1.84738 1.96765 1.13908 0.99651 1.22431 1.57794 0.94323 0.92909 0.91808 1.25546 0.92967 1.02606 0.94852 1.70008 1.48762 1.36515 1.00028 0.85882 0.80030 0.80307 0.80243 1.18739 1.16182 1.18275 1.22193 0.99793 0.77701 1.01837 1.22595 0.96448 1.00910 0.88538 1.23271 0.98055 0.95732 0.91213 0.75000 0.87218 0.87401 0.93491 0.89106 0.90160 0.90041 0.95329 0.87892 0.90229 0.89631 0.86951 0.87163 0.91355 0.88894 0.88661 0.94988 0.87074 0.90053 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 19.02 74.32 1.41 -1.14 16 2 C -0.24 -3.32 10.33 31.13 0.32 -3.00 16 3 C 0.15 1.60 6.00 84.50 0.51 2.10 16 4 N -0.51 -6.53 5.53 -893.54 -4.94 -11.47 16 5 C 0.04 0.43 6.46 86.45 0.56 0.99 16 6 C -0.12 -1.43 5.30 31.48 0.17 -1.26 16 7 C 0.08 1.15 2.75 46.12 0.13 1.28 16 8 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 9 N -0.53 -8.37 4.47 -862.05 -3.86 -12.23 16 10 C 0.05 0.91 5.51 86.38 0.48 1.38 16 11 C 0.12 2.63 6.60 86.35 0.57 3.20 16 12 N -0.61 -15.87 3.00 -817.07 -2.45 -18.32 16 13 C 0.53 19.13 7.73 87.66 0.68 19.81 16 14 O -0.56 -24.65 15.31 -3.01 -0.05 -24.70 16 15 C -0.11 -4.03 4.52 71.24 0.32 -3.70 16 16 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 17 C -0.53 -30.62 10.04 67.95 0.68 -29.94 16 18 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 19 C 0.05 2.69 5.50 84.86 0.47 3.15 16 20 N -0.92 -55.55 13.97 21.65 0.30 -55.24 16 21 Si 0.91 45.12 27.74 68.60 1.90 47.02 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.11 2.05 6.53 86.51 0.57 2.61 16 26 C 0.04 0.70 5.38 86.54 0.47 1.16 16 27 C 0.05 0.63 5.02 86.61 0.43 1.06 16 28 H 0.23 1.74 7.80 -4.42 -0.03 1.71 16 29 H 0.11 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.58 7.01 -2.39 -0.02 0.56 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.97 7.30 -2.39 -0.02 0.95 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 1.49 7.01 -2.39 -0.02 1.47 16 37 H 0.08 2.08 7.06 -2.39 -0.02 2.06 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 3.96 7.99 -2.39 -0.02 3.94 16 40 H 0.11 3.89 7.67 -2.40 -0.02 3.87 16 41 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.83 6.02 -2.39 -0.01 1.81 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 1.35 6.33 -2.39 -0.02 1.33 16 46 H 0.08 1.10 7.85 -2.39 -0.02 1.08 16 47 H 0.06 0.96 6.10 -2.39 -0.01 0.94 16 Total: -1.00 -73.18 383.91 -1.47 -74.66 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.91 Total: 12.64 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 7.75 Total: -2.28 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -10.95 Total: -97.26 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -73.18 -1.47 -74.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.066 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds