Wall clock time and date at job start Tue Mar 31 2020 19:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 N 1.46499 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00055 * 277.27742 * 4 3 2 6 6 O 1.21682 * 120.00261 * 177.28494 * 5 4 3 7 7 C 1.46681 * 119.99830 * 357.27970 * 5 4 3 8 8 C 1.35666 * 126.12925 * 187.61007 * 7 5 4 9 9 N 1.30943 * 114.19176 * 180.02562 * 8 7 5 10 10 C 1.29431 * 117.36305 * 359.97438 * 9 8 7 11 11 C 1.50703 * 124.80591 * 180.02562 * 10 9 8 12 12 S 1.70960 * 110.39184 * 359.72579 * 10 9 8 13 13 C 1.46498 * 120.00265 * 97.27961 * 4 3 2 14 14 C 1.53037 * 109.45935 * 240.00406 * 13 4 3 15 15 C 1.53194 * 109.31360 * 178.61340 * 14 13 4 16 16 N 1.46918 * 108.89504 * 54.55726 * 15 14 13 17 17 C 1.36939 * 120.62929 * 126.46772 * 16 15 14 18 18 H 1.08000 * 120.00346 * 324.69278 * 17 16 15 19 19 C 1.38816 * 119.99814 * 144.69473 * 17 16 15 20 20 N 1.31614 * 120.00474 * 4.24588 * 19 17 16 21 21 Si 1.86804 * 119.99832 * 184.24665 * 19 17 16 22 22 H 1.48499 * 109.47023 * 59.99823 * 21 19 17 23 23 H 1.48499 * 109.47073 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47165 * 299.99794 * 21 19 17 25 25 C 1.46964 * 118.71672 * 306.64481 * 16 15 14 26 26 C 1.53036 * 109.46557 * 119.93021 * 13 4 3 27 27 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47417 * 300.00304 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00000 * 1 2 3 30 30 H 1.08997 * 109.47100 * 240.00033 * 2 1 3 31 31 H 1.08997 * 109.46715 * 119.99692 * 2 1 3 32 32 H 1.09003 * 109.47288 * 59.99617 * 3 2 1 33 33 H 1.08996 * 109.47552 * 300.00086 * 3 2 1 34 34 H 1.07998 * 122.90433 * 0.02562 * 8 7 5 35 35 H 1.08997 * 109.46881 * 89.97630 * 11 10 9 36 36 H 1.08997 * 109.47190 * 209.97557 * 11 10 9 37 37 H 1.08997 * 109.47083 * 329.97838 * 11 10 9 38 38 H 1.09005 * 109.44853 * 359.96490 * 13 4 3 39 39 H 1.08994 * 109.50254 * 58.65530 * 14 13 4 40 40 H 1.09007 * 109.49315 * 298.56229 * 14 13 4 41 41 H 1.09001 * 109.58870 * 174.41979 * 15 14 13 42 42 H 1.09001 * 109.58360 * 294.69528 * 15 14 13 43 43 H 0.96997 * 120.00565 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.46472 * 293.56998 * 25 16 15 45 45 H 1.09000 * 109.70897 * 173.28365 * 25 16 15 46 46 H 1.08999 * 109.49679 * 301.34010 * 26 13 4 47 47 H 1.09003 * 109.49663 * 61.39954 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.2949 1.1587 6 8 5.3942 1.2453 1.1536 7 6 3.4457 1.1940 2.4254 8 6 3.9919 1.1889 3.6673 9 7 3.1182 1.0880 4.6374 10 6 1.8693 1.0075 4.3072 11 6 0.7275 0.8870 5.2833 12 16 1.6976 1.0657 2.6072 13 6 4.2380 1.6031 -1.2575 14 6 5.1178 0.3737 -1.4955 15 6 5.8563 0.5295 -2.8286 16 7 6.5887 1.8031 -2.8208 17 6 7.9299 1.8384 -3.0947 18 1 8.5684 1.0291 -2.7725 19 6 8.4690 2.9144 -3.7865 20 7 7.7077 3.9395 -4.1059 21 14 10.2749 2.9076 -4.2641 22 1 10.5503 1.7422 -5.1422 23 1 10.5999 4.1622 -4.9891 24 1 11.1103 2.8134 -3.0399 25 6 5.8548 3.0378 -2.5094 26 6 5.1164 2.8539 -1.1799 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 5.0553 1.2619 3.8407 35 1 0.3766 1.8821 5.5566 36 1 -0.0871 0.3283 4.8225 37 1 1.0672 0.3634 6.1769 38 1 3.5297 1.7073 -2.0795 39 1 4.4940 -0.5195 -1.5273 40 1 5.8427 0.2831 -0.6864 41 1 6.5581 -0.2947 -2.9561 42 1 5.1368 0.5267 -3.6474 43 1 8.0842 4.6912 -4.5896 44 1 5.1350 3.2421 -3.3020 45 1 6.5538 3.8701 -2.4271 46 1 4.4915 3.7259 -0.9872 47 1 5.8409 2.7401 -0.3735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752432108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:36 Heat of formation + Delta-G solvation = 35.919354 kcal Electronic energy + Delta-G solvation = -28080.429202 eV Core-core repulsion = 24390.974441 eV Total energy + Delta-G solvation = -3689.454762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42483 -39.56822 -36.95444 -36.22625 -33.58092 -32.48828 -31.99403 -30.17988 -29.61678 -28.57011 -26.42084 -25.28271 -24.22811 -22.84673 -22.20547 -21.80668 -20.81399 -19.44671 -18.89741 -18.03520 -16.85603 -16.69165 -16.10629 -15.51103 -15.22442 -14.78267 -14.72964 -14.55149 -14.04457 -13.74018 -13.70508 -13.53722 -13.26634 -12.99515 -12.94438 -12.71665 -12.60992 -12.50015 -12.45684 -11.91591 -11.80171 -11.58539 -11.41270 -11.19667 -11.08286 -10.80997 -10.72858 -10.32874 -10.10830 -10.00125 -9.77507 -9.71026 -9.61725 -9.36312 -9.30629 -8.96465 -8.46447 -8.29259 -6.48594 -5.72453 -3.24370 0.14584 1.05240 1.45033 2.41442 2.99513 3.25315 3.43513 3.47389 3.49327 3.90909 4.39750 4.54046 4.58716 4.68811 4.75500 4.96742 5.06462 5.10849 5.12433 5.21678 5.28220 5.41116 5.44264 5.46838 5.51374 5.63881 5.68664 5.73697 5.78489 5.85943 5.98816 6.01236 6.15430 6.33567 6.39836 6.58278 6.63742 6.80021 6.87404 7.02909 7.12726 7.39757 7.51556 7.61092 7.85273 7.86815 8.27405 8.60087 9.31276 9.90245 10.49769 11.34008 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.003043 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.971727 B = 9198.623431 C = 9961.473142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.097 3.903 4 N -0.604 5.604 5 C 0.590 3.410 6 O -0.504 6.504 7 C -0.293 4.293 8 C 0.117 3.883 9 N -0.485 5.485 10 C 0.011 3.989 11 C -0.080 4.080 12 S 0.201 5.799 13 C 0.162 3.838 14 C -0.148 4.148 15 C 0.152 3.848 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.172 3.828 26 C -0.156 4.156 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.186 0.814 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.254 0.746 44 H 0.013 0.987 45 H 0.102 0.898 46 H 0.043 0.957 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.681 -6.179 13.490 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.029 4.029 4 N -0.336 5.336 5 C 0.375 3.625 6 O -0.381 6.381 7 C -0.417 4.417 8 C -0.040 4.040 9 N -0.200 5.200 10 C -0.262 4.262 11 C -0.140 4.140 12 S 0.459 5.541 13 C 0.061 3.939 14 C -0.188 4.188 15 C 0.024 3.976 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.046 3.954 26 C -0.196 4.196 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.203 0.797 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.725 -6.080 13.299 25.364 hybrid contribution 1.688 0.145 -0.031 1.694 sum -19.037 -5.935 13.268 23.951 Atomic orbital electron populations 1.21730 0.94576 1.02309 1.01979 1.22186 0.96705 0.96772 1.03391 1.21984 0.80709 0.97469 1.02700 1.48214 1.05769 1.71958 1.07666 1.16774 0.86709 0.77365 0.81612 1.90868 1.12265 1.49089 1.85837 1.26010 0.96219 1.19597 0.99902 1.22159 1.01112 0.95387 0.85344 1.66302 1.00523 1.16781 1.36364 1.28076 0.96306 1.00789 1.01053 1.20464 0.92638 1.03704 0.97168 1.84577 1.03874 1.65390 1.00273 1.21221 0.93131 0.97405 0.82105 1.22487 0.99291 0.95031 1.01999 1.20851 0.94149 0.90272 0.92296 1.43971 1.05706 1.01045 1.80672 1.19121 0.83644 1.06479 1.28648 0.91991 1.25294 0.98177 0.97818 0.97746 1.69866 1.34833 1.07703 1.42785 0.86350 0.84945 0.76865 0.78500 1.20892 1.21625 1.20918 1.20930 0.94236 0.91415 0.88807 1.22699 0.98957 0.94175 1.03786 0.92043 0.92564 0.92126 0.90520 0.91264 0.90860 0.88541 0.79723 0.89508 0.90089 0.89404 0.90295 0.93642 0.89820 0.92652 0.96701 0.93551 0.96912 0.87976 0.93797 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.78 37.16 0.36 -0.56 16 2 C -0.15 -1.35 5.19 -26.73 -0.14 -1.48 16 3 C 0.10 1.01 4.96 -4.04 -0.02 0.99 16 4 N -0.60 -8.91 2.44 -167.60 -0.41 -9.32 16 5 C 0.59 9.72 7.00 -12.85 -0.09 9.63 16 6 O -0.50 -10.31 13.12 5.20 0.07 -10.25 16 7 C -0.29 -4.00 6.12 -37.09 -0.23 -4.22 16 8 C 0.12 1.60 11.10 -18.85 -0.21 1.39 16 9 N -0.48 -6.21 10.51 -11.50 -0.12 -6.33 16 10 C 0.01 0.11 7.39 -13.29 -0.10 0.01 16 11 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 12 S 0.20 1.88 14.67 -107.50 -1.58 0.30 16 13 C 0.16 2.83 2.51 -67.89 -0.17 2.66 16 14 C -0.15 -2.81 5.27 -26.61 -0.14 -2.95 16 15 C 0.15 3.29 6.51 -3.71 -0.02 3.27 16 16 N -0.59 -15.35 3.01 -172.30 -0.52 -15.87 16 17 C -0.25 -7.08 9.55 -15.06 -0.14 -7.22 16 18 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 19 C 0.01 0.22 5.32 -17.43 -0.09 0.13 16 20 N -0.91 -26.55 10.62 55.49 0.59 -25.96 16 21 Si 0.90 22.23 29.56 -169.99 -5.02 17.21 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.17 4.25 5.26 -3.69 -0.02 4.23 16 26 C -0.16 -3.23 5.27 -26.62 -0.14 -3.37 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.30 7.18 -51.93 -0.37 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.67 6.15 -49.35 -0.30 0.37 16 32 H 0.07 0.71 4.38 -22.08 -0.10 0.61 16 33 H 0.10 0.89 7.77 -51.93 -0.40 0.49 16 34 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.83 6.12 -51.93 -0.32 1.51 16 41 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 2.86 5.93 -51.93 -0.31 2.55 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.80 6.30 -51.93 -0.33 1.47 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -33.10 372.01 -9.30 -42.40 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.14 Total: -0.20 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.77 Total: 2.41 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.46 Total: -57.48 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.58 Total: 0.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.10 -9.30 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752432108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.321 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds