Wall clock time and date at job start Tue Mar 31 2020 19:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 N 1.46499 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00055 * 277.27742 * 4 3 2 6 6 O 1.21682 * 120.00261 * 177.28494 * 5 4 3 7 7 C 1.46681 * 119.99830 * 357.27970 * 5 4 3 8 8 C 1.35666 * 126.12925 * 187.61007 * 7 5 4 9 9 N 1.30943 * 114.19176 * 180.02562 * 8 7 5 10 10 C 1.29431 * 117.36305 * 359.97438 * 9 8 7 11 11 C 1.50703 * 124.80591 * 180.02562 * 10 9 8 12 12 S 1.70960 * 110.39184 * 359.72579 * 10 9 8 13 13 C 1.46498 * 120.00265 * 97.27961 * 4 3 2 14 14 C 1.53037 * 109.45935 * 240.00406 * 13 4 3 15 15 C 1.53194 * 109.31360 * 178.61340 * 14 13 4 16 16 N 1.46918 * 108.89504 * 54.55726 * 15 14 13 17 17 C 1.36939 * 120.62929 * 126.46772 * 16 15 14 18 18 H 1.08000 * 120.00346 * 324.69278 * 17 16 15 19 19 C 1.38816 * 119.99814 * 144.69473 * 17 16 15 20 20 N 1.31614 * 120.00474 * 4.24588 * 19 17 16 21 21 Si 1.86804 * 119.99832 * 184.24665 * 19 17 16 22 22 H 1.48499 * 109.47023 * 59.99823 * 21 19 17 23 23 H 1.48499 * 109.47073 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47165 * 299.99794 * 21 19 17 25 25 C 1.46964 * 118.71672 * 306.64481 * 16 15 14 26 26 C 1.53036 * 109.46557 * 119.93021 * 13 4 3 27 27 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47417 * 300.00304 * 1 2 3 29 29 H 1.09003 * 109.47016 * 60.00000 * 1 2 3 30 30 H 1.08997 * 109.47100 * 240.00033 * 2 1 3 31 31 H 1.08997 * 109.46715 * 119.99692 * 2 1 3 32 32 H 1.09003 * 109.47288 * 59.99617 * 3 2 1 33 33 H 1.08996 * 109.47552 * 300.00086 * 3 2 1 34 34 H 1.07998 * 122.90433 * 0.02562 * 8 7 5 35 35 H 1.08997 * 109.46881 * 89.97630 * 11 10 9 36 36 H 1.08997 * 109.47190 * 209.97557 * 11 10 9 37 37 H 1.08997 * 109.47083 * 329.97838 * 11 10 9 38 38 H 1.09005 * 109.44853 * 359.96490 * 13 4 3 39 39 H 1.08994 * 109.50254 * 58.65530 * 14 13 4 40 40 H 1.09007 * 109.49315 * 298.56229 * 14 13 4 41 41 H 1.09001 * 109.58870 * 174.41979 * 15 14 13 42 42 H 1.09001 * 109.58360 * 294.69528 * 15 14 13 43 43 H 0.96997 * 120.00565 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.46472 * 293.56998 * 25 16 15 45 45 H 1.09000 * 109.70897 * 173.28365 * 25 16 15 46 46 H 1.08999 * 109.49679 * 301.34010 * 26 13 4 47 47 H 1.09003 * 109.49663 * 61.39954 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.2949 1.1587 6 8 5.3942 1.2453 1.1536 7 6 3.4457 1.1940 2.4254 8 6 3.9919 1.1889 3.6673 9 7 3.1182 1.0880 4.6374 10 6 1.8693 1.0075 4.3072 11 6 0.7275 0.8870 5.2833 12 16 1.6976 1.0657 2.6072 13 6 4.2380 1.6031 -1.2575 14 6 5.1178 0.3737 -1.4955 15 6 5.8563 0.5295 -2.8286 16 7 6.5887 1.8031 -2.8208 17 6 7.9299 1.8384 -3.0947 18 1 8.5684 1.0291 -2.7725 19 6 8.4690 2.9144 -3.7865 20 7 7.7077 3.9395 -4.1059 21 14 10.2749 2.9076 -4.2641 22 1 10.5503 1.7422 -5.1422 23 1 10.5999 4.1622 -4.9891 24 1 11.1103 2.8134 -3.0399 25 6 5.8548 3.0378 -2.5094 26 6 5.1164 2.8539 -1.1799 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 5.0553 1.2619 3.8407 35 1 0.3766 1.8821 5.5566 36 1 -0.0871 0.3283 4.8225 37 1 1.0672 0.3634 6.1769 38 1 3.5297 1.7073 -2.0795 39 1 4.4940 -0.5195 -1.5273 40 1 5.8427 0.2831 -0.6864 41 1 6.5581 -0.2947 -2.9561 42 1 5.1368 0.5267 -3.6474 43 1 8.0842 4.6912 -4.5896 44 1 5.1350 3.2421 -3.3020 45 1 6.5538 3.8701 -2.4271 46 1 4.4915 3.7259 -0.9872 47 1 5.8409 2.7401 -0.3735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752432108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:36 Heat of formation + Delta-G solvation = 15.240923 kcal Electronic energy + Delta-G solvation = -28081.325886 eV Core-core repulsion = 24390.974441 eV Total energy + Delta-G solvation = -3690.351446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63233 -40.57106 -38.62911 -37.38032 -35.10617 -33.55209 -33.19099 -31.81034 -31.35351 -29.60045 -27.47390 -26.79348 -25.33865 -24.20769 -23.85205 -22.82870 -22.02975 -21.03667 -19.85738 -19.31883 -18.56598 -17.83307 -17.20846 -16.92775 -16.48058 -16.25007 -15.77213 -15.58041 -15.47873 -15.29437 -14.94588 -14.77431 -14.50426 -14.39589 -14.14877 -13.99790 -13.46892 -13.36346 -13.28320 -13.20131 -12.92742 -12.79305 -12.68319 -12.62524 -12.61248 -12.34032 -12.15603 -11.98261 -11.85324 -11.83320 -11.46173 -11.35929 -10.86301 -10.56145 -10.45800 -10.31379 -9.88965 -9.55302 -8.55869 -7.87551 -5.42960 -0.77650 0.18644 0.58756 1.40735 1.44370 1.46764 1.53405 1.82812 2.11175 2.48779 3.12040 3.26931 3.42072 3.69942 3.77269 3.90472 3.98686 4.04375 4.12758 4.23662 4.29865 4.32365 4.50117 4.52197 4.55525 4.63242 4.68549 4.69359 4.78457 4.85799 4.93366 4.94990 4.97416 5.05619 5.15068 5.18975 5.19129 5.25446 5.42131 5.47923 5.56110 5.59877 5.64842 5.81065 6.29588 6.45586 6.64346 7.04612 7.17331 7.85200 8.38303 9.16137 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.003043 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.971727 B = 9198.623431 C = 9961.473142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.089 3.911 4 N -0.600 5.600 5 C 0.585 3.415 6 O -0.559 6.559 7 C -0.332 4.332 8 C 0.112 3.888 9 N -0.515 5.515 10 C 0.012 3.988 11 C -0.084 4.084 12 S 0.285 5.715 13 C 0.172 3.828 14 C -0.134 4.134 15 C 0.149 3.851 16 N -0.612 5.612 17 C -0.268 4.268 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.282 1.282 25 C 0.181 3.819 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.170 0.830 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.030 0.970 43 H 0.252 0.748 44 H 0.007 0.993 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.394 -7.058 13.950 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C -0.035 4.035 4 N -0.331 5.331 5 C 0.373 3.627 6 O -0.439 6.439 7 C -0.456 4.456 8 C -0.047 4.047 9 N -0.231 5.231 10 C -0.260 4.260 11 C -0.143 4.143 12 S 0.543 5.457 13 C 0.070 3.930 14 C -0.174 4.174 15 C 0.023 3.977 16 N -0.336 5.336 17 C -0.399 4.399 18 H 0.073 0.927 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.214 1.214 24 H -0.208 1.208 25 C 0.055 3.945 26 C -0.182 4.182 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.188 0.812 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.518 -6.984 13.765 28.972 hybrid contribution 2.728 0.397 -0.090 2.758 sum -21.790 -6.587 13.675 26.556 Atomic orbital electron populations 1.21732 0.92075 1.03325 1.03101 1.22162 0.98724 0.95131 1.02744 1.22356 0.77680 0.99176 1.04257 1.48124 1.07578 1.71230 1.06120 1.17182 0.86309 0.76358 0.82840 1.90841 1.14753 1.51519 1.86785 1.25774 0.99582 1.21945 0.98304 1.22094 1.01121 0.95447 0.86039 1.66370 1.01629 1.18791 1.36296 1.28894 0.96395 0.98020 1.02725 1.20738 0.91771 1.05279 0.96522 1.84042 0.99109 1.63658 0.98842 1.20928 0.93176 0.94734 0.84182 1.22271 0.98993 0.97158 0.99008 1.20973 0.94226 0.88223 0.94231 1.44218 1.05454 1.02691 1.81221 1.19370 0.85178 1.06489 1.28835 0.92713 1.26011 1.02355 0.97481 0.97941 1.70049 1.36367 1.07970 1.43237 0.85344 0.80031 0.76991 0.78053 1.19931 1.21373 1.20816 1.20650 0.93308 0.90042 0.90499 1.22416 0.98751 0.96901 1.00112 0.91143 0.91300 0.91178 0.91090 0.92162 0.89835 0.86470 0.81244 0.87695 0.87103 0.89263 0.87749 0.90620 0.93085 0.93207 0.95196 0.93889 0.97465 0.91927 0.92134 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.78 71.98 0.70 -0.44 16 2 C -0.15 -2.13 5.19 30.59 0.16 -1.97 16 3 C 0.09 1.57 4.96 86.38 0.43 2.00 16 4 N -0.60 -17.01 2.44 -802.38 -1.96 -18.97 16 5 C 0.59 19.65 7.00 86.45 0.60 20.25 16 6 O -0.56 -24.33 13.12 -4.29 -0.06 -24.39 16 7 C -0.33 -8.96 6.12 23.88 0.15 -8.82 16 8 C 0.11 3.15 11.10 84.23 0.93 4.09 16 9 N -0.52 -12.86 10.51 -190.29 -2.00 -14.86 16 10 C 0.01 0.20 7.39 88.46 0.65 0.86 16 11 C -0.08 -0.68 10.46 71.24 0.75 0.07 16 12 S 0.28 4.45 14.67 -56.49 -0.83 3.62 16 13 C 0.17 5.87 2.51 45.02 0.11 5.98 16 14 C -0.13 -5.09 5.27 30.67 0.16 -4.93 16 15 C 0.15 6.54 6.51 86.36 0.56 7.10 16 16 N -0.61 -32.79 3.01 -699.02 -2.10 -34.90 16 17 C -0.27 -15.78 9.55 84.03 0.80 -14.98 16 18 H 0.06 3.22 7.83 -2.91 -0.02 3.19 16 19 C -0.04 -2.46 5.32 84.86 0.45 -2.01 16 20 N -0.93 -56.11 10.62 21.65 0.23 -55.88 16 21 Si 0.97 46.79 29.56 68.60 2.03 48.81 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 C 0.18 9.24 5.26 86.35 0.45 9.69 16 26 C -0.14 -6.01 5.27 30.67 0.16 -5.85 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.37 7.18 -2.39 -0.02 0.35 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.98 6.15 -4.03 -0.02 0.96 16 32 H 0.08 1.31 4.38 -21.36 -0.09 1.21 16 33 H 0.12 1.67 7.77 -2.39 -0.02 1.65 16 34 H 0.17 5.05 8.06 -2.91 -0.02 5.02 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 3.09 7.70 -2.38 -0.02 3.07 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.31 6.12 -2.38 -0.01 2.30 16 41 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.06 3.68 5.93 -2.39 -0.01 3.67 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.04 2.14 6.30 -2.39 -0.02 2.13 16 Total: -1.00 -77.15 372.01 3.27 -73.88 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.87 Total: 11.63 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 7.08 Total: 11.04 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.83 Total: -124.60 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -0.83 Total: 3.62 kcal Total: -77.15 3.27 -73.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752432108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.125 kcal (2) G-P(sol) polarization free energy of solvation -77.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds