Wall clock time and date at job start Tue Mar 31 2020 19:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 N 1.46500 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.34770 * 119.99920 * 89.99841 * 4 3 2 6 6 O 1.21280 * 120.00198 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00114 * 0.02562 * 5 4 3 8 8 C 1.50701 * 109.47610 * 179.97438 * 7 5 4 9 9 C 1.33632 * 122.74862 * 124.73338 * 8 7 5 10 10 S 1.76205 * 107.92225 * 179.97438 * 9 8 7 11 11 C 1.70976 * 90.28205 * 0.27263 * 10 9 8 12 12 N 1.29026 * 110.16587 * 359.83952 * 11 10 9 13 13 C 1.46499 * 120.00166 * 270.00679 * 4 3 2 14 14 C 1.53046 * 109.45552 * 240.02359 * 13 4 3 15 15 C 1.53194 * 109.31109 * 178.59959 * 14 13 4 16 16 N 1.46924 * 108.76508 * 54.65416 * 15 14 13 17 17 C 1.36941 * 120.63022 * 126.36448 * 16 15 14 18 18 H 1.08000 * 119.99886 * 208.02050 * 17 16 15 19 19 C 1.38809 * 119.99860 * 28.01728 * 17 16 15 20 20 N 1.31620 * 120.00127 * 17.53424 * 19 17 16 21 21 Si 1.86807 * 120.00070 * 197.52760 * 19 17 16 22 22 H 1.48490 * 109.47070 * 94.06687 * 21 19 17 23 23 H 1.48498 * 109.47029 * 214.07122 * 21 19 17 24 24 H 1.48502 * 109.46616 * 334.06799 * 21 19 17 25 25 C 1.46930 * 118.74207 * 306.38409 * 16 15 14 26 26 C 1.53041 * 109.46450 * 119.97217 * 13 4 3 27 27 H 1.08996 * 109.47285 * 300.00124 * 1 2 3 28 28 H 1.08998 * 109.46771 * 60.00404 * 1 2 3 29 29 H 1.09007 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47285 * 239.99876 * 2 1 3 31 31 H 1.08998 * 109.46771 * 119.99595 * 2 1 3 32 32 H 1.09010 * 109.47045 * 59.99888 * 3 2 1 33 33 H 1.08991 * 109.47251 * 300.00075 * 3 2 1 34 34 H 1.09009 * 109.47231 * 59.99639 * 7 5 4 35 35 H 1.09005 * 109.46962 * 300.00205 * 7 5 4 36 36 H 1.08001 * 126.04365 * 0.03950 * 9 8 7 37 37 H 1.07997 * 124.91470 * 179.83960 * 11 10 9 38 38 H 1.09003 * 109.45966 * 359.97438 * 13 4 3 39 39 H 1.08999 * 109.49931 * 298.56551 * 14 13 4 40 40 H 1.09003 * 109.49653 * 58.66651 * 14 13 4 41 41 H 1.09001 * 109.59603 * 294.86669 * 15 14 13 42 42 H 1.08997 * 109.70248 * 174.50554 * 15 14 13 43 43 H 0.97000 * 119.99924 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58182 * 293.82172 * 25 16 15 45 45 H 1.08992 * 109.70429 * 173.46318 * 25 16 15 46 46 H 1.09004 * 109.49100 * 301.33578 * 26 13 4 47 47 H 1.08993 * 109.49848 * 61.43079 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1793 1.4424 -1.1663 6 8 5.3921 1.4420 -1.1658 7 6 3.4264 1.4428 -2.4717 8 6 4.4061 1.4431 -3.6168 9 6 4.3895 0.5197 -4.5826 10 16 5.6916 0.8911 -5.7102 11 6 6.1338 2.2464 -4.7664 12 7 5.3533 2.3504 -3.7443 13 6 4.2370 1.4427 1.2696 14 6 5.1162 2.6928 1.3509 15 6 5.8533 2.7073 2.6938 16 7 6.5868 1.4431 2.8440 17 6 7.9285 1.4433 3.1182 18 1 8.5456 0.6176 2.7961 19 6 8.4953 2.5048 3.8102 20 7 7.7299 3.3265 4.4968 21 14 10.3444 2.7670 3.7671 22 1 10.6831 3.7270 2.6861 23 1 10.7977 3.3111 5.0724 24 1 11.0221 1.4711 3.5088 25 6 5.8536 0.1787 2.6939 26 6 5.1163 0.1928 1.3512 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 2.8000 2.3330 -2.5296 35 1 2.7994 0.5530 -2.5297 36 1 3.6993 -0.3074 -4.6592 37 1 6.9485 2.9182 -4.9930 38 1 3.5282 1.4431 2.0977 39 1 5.8417 2.6808 0.5375 40 1 4.4919 3.5826 1.2692 41 1 5.1329 2.8104 3.5052 42 1 6.5542 3.5417 2.7192 43 1 8.1260 4.0684 4.9801 44 1 5.1332 0.0757 3.5054 45 1 6.5531 -0.6568 2.7179 46 1 4.4920 -0.6971 1.2696 47 1 5.8418 0.2046 0.5379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752439858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:45 Heat of formation + Delta-G solvation = 33.641296 kcal Electronic energy + Delta-G solvation = -28040.103010 eV Core-core repulsion = 24350.549465 eV Total energy + Delta-G solvation = -3689.553545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48673 -39.38338 -36.88113 -35.94539 -33.41731 -32.37306 -31.77720 -30.03483 -29.51701 -28.17409 -26.18163 -25.23924 -24.50524 -22.38901 -22.09027 -21.69071 -19.93566 -19.40128 -18.85464 -17.83561 -17.01400 -16.30022 -16.12994 -15.62039 -15.10911 -14.82940 -14.51982 -14.38011 -13.84023 -13.66232 -13.52807 -13.35546 -13.31945 -13.16400 -12.88803 -12.74772 -12.42828 -12.25271 -12.18746 -11.84230 -11.52014 -11.48582 -11.29041 -11.02245 -10.92146 -10.81023 -10.63894 -10.20064 -10.02700 -9.97395 -9.65889 -9.59212 -9.54752 -9.44349 -9.14474 -8.85822 -8.41662 -8.15823 -6.55935 -5.68508 -3.09239 0.63424 1.30482 1.61978 2.70424 2.96184 3.29670 3.46663 3.52942 3.54677 4.09991 4.60023 4.60499 4.74068 4.79107 4.83013 5.01052 5.11571 5.15575 5.24094 5.28677 5.44803 5.45253 5.53093 5.55619 5.57821 5.69142 5.78477 5.82230 5.89717 5.94800 5.97830 6.12558 6.24679 6.43606 6.47369 6.63169 6.70823 6.84708 6.91987 7.13956 7.21613 7.50539 7.69360 7.72512 7.82919 7.91015 8.55774 8.58349 9.32454 9.96200 10.52742 11.40306 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.003792 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.526682 B = 7382.654401 C = 9605.115469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.107 3.893 4 N -0.614 5.614 5 C 0.514 3.486 6 O -0.501 6.501 7 C -0.068 4.068 8 C 0.089 3.911 9 C -0.256 4.256 10 S 0.100 5.900 11 C 0.030 3.970 12 N -0.440 5.440 13 C 0.163 3.837 14 C -0.153 4.153 15 C 0.177 3.823 16 N -0.589 5.589 17 C -0.246 4.246 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.151 3.849 26 C -0.145 4.145 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.014 0.986 42 H 0.087 0.913 43 H 0.252 0.748 44 H 0.014 0.986 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 -5.378 -18.547 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.347 5.347 5 C 0.300 3.700 6 O -0.374 6.374 7 C -0.111 4.111 8 C -0.044 4.044 9 C -0.395 4.395 10 S 0.352 5.648 11 C -0.269 4.269 12 N -0.152 5.152 13 C 0.061 3.939 14 C -0.193 4.193 15 C 0.050 3.950 16 N -0.312 5.312 17 C -0.376 4.376 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.550 5.550 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.024 3.976 26 C -0.185 4.185 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.193 0.807 37 H 0.215 0.785 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.473 -5.221 -18.982 24.435 hybrid contribution 0.205 0.182 0.716 0.767 sum -14.268 -5.039 -18.266 23.719 Atomic orbital electron populations 1.21712 0.95274 1.01856 1.01910 1.22005 0.95881 0.97504 1.02885 1.21657 0.80365 0.96596 1.03056 1.48302 1.05865 1.74045 1.06506 1.20101 0.88198 0.77247 0.84447 1.90755 1.13341 1.46733 1.86594 1.20352 0.96173 1.04768 0.89817 1.19695 0.96216 0.91917 0.96552 1.26742 1.05824 1.06526 1.00433 1.83926 1.26202 1.26216 1.28432 1.28431 1.03551 1.00960 0.93948 1.66038 1.04044 1.26595 1.18554 1.21072 0.93001 0.97125 0.82663 1.22620 0.99087 0.94436 1.03199 1.20718 0.94072 0.90491 0.89693 1.44015 1.05860 0.99432 1.81880 1.19201 0.83295 1.06411 1.28650 0.91838 1.24992 0.97698 1.00017 0.96957 1.70039 1.33952 1.18373 1.32595 0.86292 0.85716 0.78058 0.76853 1.21508 1.21865 1.20433 1.20829 0.94119 0.90254 0.92403 1.22433 0.99195 0.95045 1.01837 0.92458 0.92699 0.92586 0.91986 0.91225 0.90277 0.90821 0.87628 0.87779 0.80700 0.78478 0.90794 0.90192 0.93889 0.96753 0.89442 0.93794 0.96798 0.92816 0.93818 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.14 -1.24 6.26 -26.73 -0.17 -1.40 16 3 C 0.11 1.06 5.18 -4.04 -0.02 1.04 16 4 N -0.61 -8.86 2.42 -166.06 -0.40 -9.26 16 5 C 0.51 8.13 7.06 -10.99 -0.08 8.06 16 6 O -0.50 -10.39 11.69 5.56 0.06 -10.33 16 7 C -0.07 -0.78 4.75 -29.03 -0.14 -0.92 16 8 C 0.09 1.15 5.64 -84.23 -0.47 0.68 16 9 C -0.26 -2.65 11.07 29.12 0.32 -2.32 16 10 S 0.10 0.94 23.22 -107.50 -2.50 -1.55 16 11 C 0.03 0.36 12.23 51.58 0.63 0.99 16 12 N -0.44 -6.60 9.68 -11.90 -0.12 -6.72 16 13 C 0.16 2.92 2.51 -67.89 -0.17 2.75 16 14 C -0.15 -3.28 5.27 -26.61 -0.14 -3.42 16 15 C 0.18 4.48 5.31 -3.71 -0.02 4.46 16 16 N -0.59 -15.71 2.99 -172.32 -0.52 -16.23 16 17 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 18 H 0.06 1.84 7.89 -52.49 -0.41 1.43 16 19 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 20 N -0.90 -27.24 11.22 55.49 0.62 -26.62 16 21 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 C 0.15 3.38 6.51 -3.71 -0.02 3.36 16 26 C -0.15 -2.82 5.27 -26.61 -0.14 -2.96 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 0.52 7.22 -51.93 -0.38 0.15 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.76 7.92 -51.92 -0.41 0.35 16 33 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 34 H 0.11 1.02 7.40 -51.92 -0.38 0.64 16 35 H 0.10 0.86 7.07 -51.93 -0.37 0.49 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 39 H 0.08 1.96 6.21 -51.93 -0.32 1.64 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.50 6.06 -51.93 -0.31 2.18 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 1.19 7.94 -51.93 -0.41 0.78 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.82 6.21 -51.93 -0.32 1.50 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -35.42 381.30 -9.83 -45.26 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.43 Total: -0.45 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.28 Total: 2.32 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.41 Total: -58.83 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.06 Total: -10.33 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.42 -9.83 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.898 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds