Wall clock time and date at job start Tue Mar 31 2020 19:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 N 1.46500 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.34770 * 119.99920 * 89.99841 * 4 3 2 6 6 O 1.21280 * 120.00198 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00114 * 0.02562 * 5 4 3 8 8 C 1.50701 * 109.47610 * 179.97438 * 7 5 4 9 9 C 1.33632 * 122.74862 * 124.73338 * 8 7 5 10 10 S 1.76205 * 107.92225 * 179.97438 * 9 8 7 11 11 C 1.70976 * 90.28205 * 0.27263 * 10 9 8 12 12 N 1.29026 * 110.16587 * 359.83952 * 11 10 9 13 13 C 1.46499 * 120.00166 * 270.00679 * 4 3 2 14 14 C 1.53046 * 109.45552 * 240.02359 * 13 4 3 15 15 C 1.53194 * 109.31109 * 178.59959 * 14 13 4 16 16 N 1.46924 * 108.76508 * 54.65416 * 15 14 13 17 17 C 1.36941 * 120.63022 * 126.36448 * 16 15 14 18 18 H 1.08000 * 119.99886 * 208.02050 * 17 16 15 19 19 C 1.38809 * 119.99860 * 28.01728 * 17 16 15 20 20 N 1.31620 * 120.00127 * 17.53424 * 19 17 16 21 21 Si 1.86807 * 120.00070 * 197.52760 * 19 17 16 22 22 H 1.48490 * 109.47070 * 94.06687 * 21 19 17 23 23 H 1.48498 * 109.47029 * 214.07122 * 21 19 17 24 24 H 1.48502 * 109.46616 * 334.06799 * 21 19 17 25 25 C 1.46930 * 118.74207 * 306.38409 * 16 15 14 26 26 C 1.53041 * 109.46450 * 119.97217 * 13 4 3 27 27 H 1.08996 * 109.47285 * 300.00124 * 1 2 3 28 28 H 1.08998 * 109.46771 * 60.00404 * 1 2 3 29 29 H 1.09007 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47285 * 239.99876 * 2 1 3 31 31 H 1.08998 * 109.46771 * 119.99595 * 2 1 3 32 32 H 1.09010 * 109.47045 * 59.99888 * 3 2 1 33 33 H 1.08991 * 109.47251 * 300.00075 * 3 2 1 34 34 H 1.09009 * 109.47231 * 59.99639 * 7 5 4 35 35 H 1.09005 * 109.46962 * 300.00205 * 7 5 4 36 36 H 1.08001 * 126.04365 * 0.03950 * 9 8 7 37 37 H 1.07997 * 124.91470 * 179.83960 * 11 10 9 38 38 H 1.09003 * 109.45966 * 359.97438 * 13 4 3 39 39 H 1.08999 * 109.49931 * 298.56551 * 14 13 4 40 40 H 1.09003 * 109.49653 * 58.66651 * 14 13 4 41 41 H 1.09001 * 109.59603 * 294.86669 * 15 14 13 42 42 H 1.08997 * 109.70248 * 174.50554 * 15 14 13 43 43 H 0.97000 * 119.99924 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58182 * 293.82172 * 25 16 15 45 45 H 1.08992 * 109.70429 * 173.46318 * 25 16 15 46 46 H 1.09004 * 109.49100 * 301.33578 * 26 13 4 47 47 H 1.08993 * 109.49848 * 61.43079 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1793 1.4424 -1.1663 6 8 5.3921 1.4420 -1.1658 7 6 3.4264 1.4428 -2.4717 8 6 4.4061 1.4431 -3.6168 9 6 4.3895 0.5197 -4.5826 10 16 5.6916 0.8911 -5.7102 11 6 6.1338 2.2464 -4.7664 12 7 5.3533 2.3504 -3.7443 13 6 4.2370 1.4427 1.2696 14 6 5.1162 2.6928 1.3509 15 6 5.8533 2.7073 2.6938 16 7 6.5868 1.4431 2.8440 17 6 7.9285 1.4433 3.1182 18 1 8.5456 0.6176 2.7961 19 6 8.4953 2.5048 3.8102 20 7 7.7299 3.3265 4.4968 21 14 10.3444 2.7670 3.7671 22 1 10.6831 3.7270 2.6861 23 1 10.7977 3.3111 5.0724 24 1 11.0221 1.4711 3.5088 25 6 5.8536 0.1787 2.6939 26 6 5.1163 0.1928 1.3512 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 2.8000 2.3330 -2.5296 35 1 2.7994 0.5530 -2.5297 36 1 3.6993 -0.3074 -4.6592 37 1 6.9485 2.9182 -4.9930 38 1 3.5282 1.4431 2.0977 39 1 5.8417 2.6808 0.5375 40 1 4.4919 3.5826 1.2692 41 1 5.1329 2.8104 3.5052 42 1 6.5542 3.5417 2.7192 43 1 8.1260 4.0684 4.9801 44 1 5.1332 0.0757 3.5054 45 1 6.5531 -0.6568 2.7179 46 1 4.4920 -0.6971 1.2696 47 1 5.8418 0.2046 0.5379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752439858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:44 Heat of formation + Delta-G solvation = 11.286986 kcal Electronic energy + Delta-G solvation = -28041.072366 eV Core-core repulsion = 24350.549465 eV Total energy + Delta-G solvation = -3690.522901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57955 -40.43155 -38.57862 -37.06879 -34.99496 -33.41353 -33.13835 -31.73694 -31.28141 -29.18202 -27.29843 -26.53743 -25.73738 -23.98388 -23.85009 -22.58610 -21.28234 -20.60526 -20.01724 -18.92453 -18.67417 -17.54890 -17.32860 -16.79275 -16.61909 -16.05445 -15.64720 -15.46200 -15.36944 -15.31980 -14.85049 -14.65136 -14.45093 -14.24191 -14.11237 -14.08535 -13.85701 -13.32677 -13.18675 -13.06716 -12.95079 -12.73061 -12.64128 -12.53446 -12.30023 -12.22043 -12.10887 -11.99262 -11.80379 -11.54608 -11.36950 -11.22281 -10.63020 -10.51980 -10.45629 -10.27855 -9.70989 -9.47088 -8.70621 -7.90676 -5.34653 -0.16846 0.55759 0.81688 1.40696 1.44080 1.52431 1.77765 1.82000 2.23096 2.47991 3.23906 3.31057 3.64863 3.67048 3.97856 4.04389 4.05938 4.10741 4.19448 4.30793 4.37292 4.43921 4.49607 4.50026 4.53060 4.65158 4.67465 4.71464 4.81379 4.82147 4.89019 4.96188 5.04325 5.08547 5.16060 5.18699 5.29991 5.34346 5.43985 5.49150 5.54705 5.61408 5.68345 5.83897 6.36595 6.61713 6.90611 7.12112 7.42305 7.83565 8.34745 9.15856 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.003792 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.526682 B = 7382.654401 C = 9605.115469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.609 5.609 5 C 0.506 3.494 6 O -0.559 6.559 7 C -0.058 4.058 8 C 0.055 3.945 9 C -0.251 4.251 10 S 0.153 5.847 11 C 0.004 3.996 12 N -0.491 5.491 13 C 0.173 3.827 14 C -0.137 4.137 15 C 0.186 3.814 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.058 0.942 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.147 3.853 26 C -0.128 4.128 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.208 0.792 37 H 0.211 0.789 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.047 0.953 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.088 -6.785 -20.386 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.021 4.021 4 N -0.342 5.342 5 C 0.295 3.705 6 O -0.436 6.436 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.390 4.390 10 S 0.405 5.595 11 C -0.294 4.294 12 N -0.205 5.205 13 C 0.069 3.931 14 C -0.177 4.177 15 C 0.059 3.941 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.075 0.925 19 C -0.243 4.243 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.218 1.218 23 H -0.213 1.213 24 H -0.194 1.194 25 C 0.021 3.979 26 C -0.168 4.168 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.909 -6.651 -20.844 27.652 hybrid contribution 0.931 0.573 1.225 1.642 sum -15.978 -6.079 -19.619 26.022 Atomic orbital electron populations 1.21678 0.93524 1.02395 1.02701 1.21938 0.97243 0.96116 1.02407 1.22006 0.77132 0.98147 1.04796 1.48264 1.07711 1.73385 1.04815 1.20959 0.87846 0.75755 0.85989 1.90742 1.16099 1.49258 1.87491 1.20402 0.95764 1.07323 0.86486 1.19981 0.96929 0.92786 0.97999 1.27195 1.05980 1.06258 0.99581 1.83688 1.24951 1.24058 1.26769 1.28742 1.03892 1.02540 0.94212 1.66041 1.05550 1.28656 1.20251 1.20720 0.92851 0.94220 0.85263 1.22327 0.98797 0.97276 0.99269 1.20480 0.93064 0.88986 0.91532 1.44252 1.05661 1.01115 1.82235 1.19459 0.84856 1.06590 1.28570 0.92472 1.25725 1.01874 0.99825 0.96849 1.70168 1.35563 1.18707 1.33277 0.85312 0.80795 0.78062 0.76681 1.21771 1.21266 1.19387 1.20978 0.94172 0.88284 0.94428 1.22187 0.98820 0.97260 0.98520 0.92515 0.91115 0.92206 0.91378 0.92880 0.89758 0.87969 0.85803 0.84070 0.77505 0.77233 0.89109 0.93574 0.92516 0.97587 0.93445 0.94018 0.95670 0.93337 0.90731 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.14 -1.87 6.26 30.60 0.19 -1.68 16 3 C 0.10 1.65 5.18 86.38 0.45 2.10 16 4 N -0.61 -16.49 2.42 -797.68 -1.93 -18.43 16 5 C 0.51 15.49 7.06 87.66 0.62 16.11 16 6 O -0.56 -23.75 11.69 -3.03 -0.04 -23.79 16 7 C -0.06 -1.16 4.75 29.10 0.14 -1.03 16 8 C 0.06 1.35 5.64 41.52 0.23 1.58 16 9 C -0.25 -4.51 11.07 66.77 0.74 -3.77 16 10 S 0.15 2.59 23.22 -56.49 -1.31 1.28 16 11 C 0.00 0.09 12.23 130.65 1.60 1.69 16 12 N -0.49 -14.78 9.68 -191.56 -1.85 -16.64 16 13 C 0.17 6.06 2.51 45.02 0.11 6.17 16 14 C -0.14 -6.01 5.27 30.67 0.16 -5.84 16 15 C 0.19 9.79 5.31 86.36 0.46 10.25 16 16 N -0.61 -33.58 2.99 -699.10 -2.09 -35.67 16 17 C -0.26 -15.95 9.58 84.03 0.81 -15.15 16 18 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 19 C -0.05 -2.83 4.90 84.86 0.42 -2.41 16 20 N -0.93 -57.88 11.22 21.65 0.24 -57.64 16 21 Si 0.96 48.23 29.59 68.60 2.03 50.26 16 22 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.15 6.67 6.51 86.36 0.56 7.23 16 26 C -0.13 -4.94 5.27 30.67 0.16 -4.78 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.85 7.22 -2.39 -0.02 0.84 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.34 7.92 -2.38 -0.02 1.32 16 33 H 0.10 1.14 6.44 -2.39 -0.02 1.12 16 34 H 0.12 1.99 7.40 -2.38 -0.02 1.98 16 35 H 0.14 1.69 7.07 -2.38 -0.02 1.67 16 36 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.21 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.09 2.91 7.79 -2.39 -0.02 2.89 16 39 H 0.05 2.36 6.21 -2.39 -0.01 2.35 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 2.19 7.94 -2.39 -0.02 2.18 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.05 2.27 6.21 -2.39 -0.01 2.25 16 Total: -1.00 -82.16 381.30 3.36 -78.80 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.96 Total: 11.98 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 7.36 Total: 9.84 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -5.64 Total: -128.37 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.79 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.31 Total: 1.28 kcal Total: -82.16 3.36 -78.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.083 kcal (2) G-P(sol) polarization free energy of solvation -82.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds