Wall clock time and date at job start Tue Mar 31 2020 19:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47196 * 2 1 4 4 H 1.08997 * 109.47086 * 55.57749 * 3 2 1 5 5 C 1.53001 * 109.47105 * 175.57966 * 3 2 1 6 6 N 1.46504 * 109.46877 * 174.99916 * 5 3 2 7 7 C 1.34771 * 120.00117 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99618 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00392 * 180.02562 * 7 6 5 10 10 S 1.80994 * 109.47359 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00228 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99661 * 0.02562 * 11 10 9 13 13 C 1.38794 * 120.00354 * 179.97438 * 11 10 9 14 14 N 1.31632 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00317 * 180.02562 * 13 11 10 16 16 H 1.48512 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47321 * 120.00061 * 15 13 11 18 18 H 1.48499 * 109.47649 * 240.00671 * 15 13 11 19 19 N 1.46894 * 109.47015 * 295.58074 * 3 2 1 20 20 C 1.46903 * 111.00094 * 294.15063 * 19 3 2 21 21 C 1.50699 * 109.47167 * 173.83612 * 20 19 3 22 22 C 1.38668 * 120.42272 * 256.44800 * 21 20 19 23 23 C 1.38629 * 118.42506 * 179.75326 * 22 21 20 24 24 C 1.38235 * 119.15529 * 0.25044 * 23 22 21 25 25 N 1.31848 * 120.76498 * 0.02612 * 24 23 22 26 26 C 1.31883 * 121.72906 * 359.97143 * 25 24 23 27 27 C 1.50703 * 119.62042 * 180.02562 * 26 25 24 28 28 H 1.09006 * 109.47249 * 305.23477 * 1 2 3 29 29 H 1.08997 * 109.47202 * 65.23555 * 1 2 3 30 30 H 1.09005 * 109.47030 * 185.23781 * 1 2 3 31 31 H 1.08995 * 109.47215 * 240.00074 * 2 1 3 32 32 H 1.09005 * 109.47372 * 119.99884 * 2 1 3 33 33 H 1.08995 * 109.47285 * 294.99944 * 5 3 2 34 34 H 1.08998 * 109.47246 * 55.00009 * 5 3 2 35 35 H 0.97001 * 119.99912 * 0.02562 * 6 5 3 36 36 H 1.08995 * 109.47019 * 300.00403 * 9 7 6 37 37 H 1.08998 * 109.46998 * 60.00154 * 9 7 6 38 38 H 0.97002 * 119.99601 * 179.97438 * 14 13 11 39 39 H 1.00902 * 111.00179 * 170.19898 * 19 3 2 40 40 H 1.08997 * 109.46873 * 53.84066 * 20 19 3 41 41 H 1.08999 * 109.46956 * 293.84304 * 20 19 3 42 42 H 1.07998 * 120.79018 * 0.02982 * 22 21 20 43 43 H 1.07995 * 120.42353 * 180.27460 * 23 22 21 44 44 H 1.07998 * 119.61676 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.46841 * 95.22147 * 27 26 25 46 46 H 1.08994 * 109.47340 * 215.22036 * 27 26 25 47 47 H 1.09001 * 109.47265 * 335.22553 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6134 1.9787 0.8477 5 6 3.5659 1.4439 0.1112 6 7 4.0630 2.8168 -0.0087 7 6 5.3862 3.0629 0.0603 8 8 6.1656 2.1477 0.2213 9 6 5.8976 4.4752 -0.0624 10 16 7.7027 4.4769 0.0689 11 6 8.0205 6.2013 -0.1041 12 1 7.2003 6.8904 -0.2418 13 6 9.3247 6.6743 -0.0623 14 7 10.3243 5.8346 0.1061 15 14 9.6616 8.5026 -0.2450 16 1 8.3773 9.2274 -0.4206 17 1 10.3496 9.0032 0.9720 18 1 10.5253 8.7308 -1.4312 19 7 1.6394 2.1035 -1.2492 20 6 2.3075 1.4923 -2.4059 21 6 1.7610 2.0914 -3.6761 22 6 0.8591 1.3828 -4.4554 23 6 0.3789 1.9756 -5.6129 24 6 0.8160 3.2424 -5.9520 25 7 1.6790 3.8847 -5.1897 26 6 2.1568 3.3517 -4.0820 27 6 3.1409 4.1286 -3.2458 28 1 -0.3634 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9331 30 1 -0.3633 -1.0234 0.0938 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8602 1.0341 1.0773 34 1 3.9889 0.8334 -0.6866 35 1 3.4396 3.5489 -0.1371 36 1 5.6035 4.8853 -1.0285 37 1 5.4743 5.0854 0.7354 38 1 11.2358 6.1651 0.1349 39 1 1.8221 3.0950 -1.2084 40 1 2.1264 0.4174 -2.4040 41 1 3.3796 1.6802 -2.3474 42 1 0.5349 0.3943 -4.1652 43 1 -0.3281 1.4546 -6.2414 44 1 0.4471 3.7111 -6.8523 45 1 2.6086 4.6540 -2.4529 46 1 3.8643 3.4427 -2.8051 47 1 3.6613 4.8510 -3.8746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:59 Heat of formation + Delta-G solvation = -11.690098 kcal Electronic energy + Delta-G solvation = -26834.814700 eV Core-core repulsion = 23143.295438 eV Total energy + Delta-G solvation = -3691.519262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71300 -39.59012 -37.99089 -34.30846 -33.75686 -33.15798 -32.44573 -31.42920 -29.88500 -28.27190 -27.53775 -25.84898 -25.47739 -23.43482 -22.87496 -22.01087 -20.42668 -20.07593 -17.94141 -17.30364 -17.02723 -16.40165 -16.35060 -16.05042 -15.58889 -15.03467 -14.85306 -14.81706 -14.41841 -14.03959 -13.98512 -13.84513 -13.49829 -13.27462 -13.23336 -13.08957 -12.72494 -12.61522 -12.41006 -12.33771 -12.22290 -11.80333 -11.68487 -11.51316 -11.21280 -11.08123 -11.03951 -10.97078 -10.76770 -9.98635 -9.83124 -9.61671 -9.49116 -9.10607 -9.09154 -9.00530 -8.75020 -8.26377 -6.52719 -6.23679 -3.94482 0.85562 1.07024 2.95038 3.01441 3.20829 3.26673 3.31023 3.46985 3.64295 3.96118 4.12025 4.18489 4.38311 4.42182 4.57589 4.63394 4.72756 4.78732 4.84772 5.06761 5.10985 5.11911 5.13385 5.15120 5.30806 5.37049 5.42123 5.44380 5.47003 5.48440 5.57685 5.60911 5.73912 5.75478 5.82782 5.89856 5.92474 5.96813 6.05163 6.08711 6.09385 6.43734 6.48907 6.62258 6.94503 7.55078 7.58626 7.81009 8.33641 8.51772 9.22095 10.83772 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.002881 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.692087 B = 9716.935698 C =11627.549396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.092 0.908 5 C 0.084 3.916 6 N -0.741 5.741 7 C 0.532 3.468 8 O -0.514 6.514 9 C -0.155 4.155 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.671 5.671 20 C 0.092 3.908 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.182 4.182 24 C 0.099 3.901 25 N -0.483 5.483 26 C 0.139 3.861 27 C -0.115 4.115 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.340 0.660 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.199 -10.146 -6.132 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.110 0.890 5 C -0.042 4.042 6 N -0.397 5.397 7 C 0.318 3.682 8 O -0.387 6.387 9 C -0.305 4.305 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 N -0.302 5.302 20 C -0.037 4.037 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.202 4.202 24 C -0.058 4.058 25 N -0.193 5.193 26 C 0.001 3.999 27 C -0.172 4.172 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.988 -11.249 -6.146 26.320 hybrid contribution -0.398 2.046 -0.106 2.087 sum -23.386 -9.203 -6.251 25.897 Atomic orbital electron populations 1.21620 0.94790 1.00773 1.02611 1.21515 0.96994 0.94358 1.02316 1.21966 0.91743 0.96982 0.92728 0.88975 1.22048 0.94936 0.84287 1.02949 1.46025 1.07734 1.08744 1.77161 1.20327 0.81329 0.91162 0.75353 1.90714 1.55298 1.46175 1.46538 1.23542 1.07028 0.95067 1.04883 1.85415 0.91697 1.11012 1.95163 1.22897 0.95373 0.92301 1.57713 0.90852 1.24993 0.95081 0.98975 0.94540 1.70028 0.99386 1.34479 1.46386 0.86120 0.78460 0.82978 0.77965 1.19568 1.20574 1.20549 1.60705 1.60542 1.07603 1.01346 1.20923 0.96666 0.99299 0.86821 1.20561 0.99083 0.95675 0.97701 1.21440 0.93950 0.99650 0.93396 1.22100 1.02390 0.97326 0.98408 1.22738 0.93011 0.91917 0.98131 1.67554 1.10314 1.36466 1.04928 1.21184 0.95111 0.91618 0.92016 1.20871 0.96993 1.00365 0.99021 0.92991 0.91707 0.93411 0.91639 0.91308 0.91030 0.91295 0.77343 0.89221 0.89222 0.92228 0.84075 0.89595 0.92566 0.84982 0.84964 0.82926 0.90368 0.90309 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.73 37.15 0.36 -0.54 16 2 C -0.11 -0.76 5.32 -26.73 -0.14 -0.90 16 3 C 0.08 0.56 2.71 -67.71 -0.18 0.38 16 4 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 5 C 0.08 0.86 4.47 -4.04 -0.02 0.84 16 6 N -0.74 -8.75 5.29 -60.29 -0.32 -9.07 16 7 C 0.53 9.32 7.85 -10.99 -0.09 9.23 16 8 O -0.51 -11.23 15.86 5.56 0.09 -11.14 16 9 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 11 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 15 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 N -0.67 -5.05 5.80 -107.99 -0.63 -5.68 16 20 C 0.09 0.77 4.34 -4.97 -0.02 0.75 16 21 C -0.13 -1.22 5.46 -104.48 -0.57 -1.79 16 22 C -0.06 -0.48 9.81 -39.28 -0.39 -0.87 16 23 C -0.18 -1.45 10.11 -39.44 -0.40 -1.85 16 24 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 25 N -0.48 -5.82 10.27 -9.47 -0.10 -5.92 16 26 C 0.14 1.55 6.78 -82.59 -0.56 0.99 16 27 C -0.12 -1.20 8.95 36.01 0.32 -0.88 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 6.24 -51.93 -0.32 0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.79 6.77 -51.93 -0.35 0.43 16 35 H 0.39 3.62 7.24 -40.82 -0.30 3.32 16 36 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.34 2.56 6.04 -39.29 -0.24 2.33 16 40 H 0.09 0.66 5.99 -51.93 -0.31 0.35 16 41 H 0.06 0.57 5.13 -51.93 -0.27 0.30 16 42 H 0.13 0.82 8.05 -52.49 -0.42 0.40 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.08 0.68 7.47 -51.93 -0.39 0.29 16 46 H 0.08 0.85 6.41 -51.93 -0.33 0.51 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -34.72 394.35 -10.08 -44.81 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.11 Total: 3.24 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.46 Total: -9.41 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.31 Total: -45.94 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.72 -10.08 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.116 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds