Wall clock time and date at job start Tue Mar 31 2020 19:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.09000 * 109.46868 * 305.24954 * 3 2 1 5 5 C 1.52996 * 109.46916 * 185.25569 * 3 2 1 6 6 N 1.46501 * 109.47114 * 185.00055 * 5 3 2 7 7 C 1.34774 * 120.00302 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00258 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.46973 * 180.02562 * 9 7 6 11 11 C 1.76204 * 99.99905 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00096 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00094 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99641 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99869 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46941 * 90.00177 * 15 13 11 17 17 H 1.48502 * 109.47084 * 209.99785 * 15 13 11 18 18 H 1.48497 * 109.47336 * 329.99945 * 15 13 11 19 19 N 1.46901 * 109.47396 * 65.25068 * 3 2 1 20 20 C 1.46900 * 110.99728 * 63.85497 * 19 3 2 21 21 C 1.50698 * 109.46988 * 176.36421 * 20 19 3 22 22 C 1.38678 * 120.42058 * 260.30226 * 21 20 19 23 23 C 1.38628 * 118.42058 * 180.26183 * 22 21 20 24 24 C 1.38229 * 119.16053 * 359.44215 * 23 22 21 25 25 N 1.31859 * 120.76068 * 0.29774 * 24 23 22 26 26 C 1.31879 * 121.72851 * 359.97438 * 25 24 23 27 27 C 1.50700 * 119.61812 * 179.97438 * 26 25 24 28 28 H 1.08988 * 109.47187 * 295.04561 * 1 2 3 29 29 H 1.09006 * 109.46928 * 55.05253 * 1 2 3 30 30 H 1.09003 * 109.46780 * 175.04200 * 1 2 3 31 31 H 1.09001 * 109.47184 * 239.99579 * 2 1 3 32 32 H 1.08997 * 109.46762 * 119.99708 * 2 1 3 33 33 H 1.09001 * 109.47028 * 304.99282 * 5 3 2 34 34 H 1.08998 * 109.47710 * 64.99491 * 5 3 2 35 35 H 0.97001 * 120.00226 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.46734 * 300.00160 * 9 7 6 37 37 H 1.08997 * 109.47154 * 60.00398 * 9 7 6 38 38 H 0.97006 * 119.99363 * 180.02562 * 14 13 11 39 39 H 1.00894 * 110.99856 * 187.80837 * 19 3 2 40 40 H 1.09004 * 109.46934 * 56.36655 * 20 19 3 41 41 H 1.09001 * 109.47288 * 296.36978 * 20 19 3 42 42 H 1.08002 * 120.78798 * 359.97438 * 22 21 20 43 43 H 1.07992 * 120.41894 * 179.71729 * 23 22 21 44 44 H 1.07996 * 119.61920 * 180.27253 * 24 23 22 45 45 H 1.09001 * 109.46867 * 89.99894 * 27 26 25 46 46 H 1.08994 * 109.47350 * 209.99970 * 27 26 25 47 47 H 1.09004 * 109.46961 * 330.00401 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6019 1.9827 -0.8392 5 6 3.5643 1.4445 -0.1321 6 7 4.0630 2.8168 -0.0124 7 6 5.3853 3.0631 -0.0975 8 8 6.1623 2.1486 -0.2736 9 6 5.8983 4.4748 0.0251 10 16 7.7016 4.4771 -0.1310 11 6 8.0217 6.2009 0.0444 12 1 7.2035 6.8893 0.1970 13 6 9.3253 6.6740 -0.0123 14 7 9.5643 7.9617 0.1192 15 14 10.7403 5.4834 -0.2755 16 1 10.9955 5.3317 -1.7305 17 1 11.9599 6.0094 0.3887 18 1 10.3906 4.1625 0.3061 19 7 1.6566 2.0975 1.2578 20 6 2.3039 1.4505 2.4068 21 6 1.9591 2.2022 3.6665 22 6 2.8570 3.1072 4.2123 23 6 2.4994 3.7718 5.3751 24 6 1.2637 3.5209 5.9415 25 7 0.4327 2.6573 5.3917 26 6 0.7416 2.0031 4.2890 27 6 -0.2442 1.0262 3.7017 28 1 -0.3633 0.4350 0.9309 29 1 -0.3633 0.5887 -0.8424 30 1 -0.3633 -1.0239 -0.0888 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9982 0.8302 0.6569 34 1 3.8453 1.0392 -1.1041 35 1 3.4416 3.5482 0.1281 36 1 5.4648 5.0887 -0.7644 37 1 5.6169 4.8805 0.9968 38 1 10.4754 8.2924 0.0792 39 1 1.8687 3.0835 1.2312 40 1 3.3847 1.4553 2.2652 41 1 1.9530 0.4218 2.4899 42 1 3.8141 3.2864 3.7451 43 1 3.1759 4.4800 5.8303 44 1 0.9757 4.0378 6.8449 45 1 -0.8940 1.5452 2.9970 46 1 0.2949 0.2337 3.1828 47 1 -0.8466 0.5934 4.5004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:02 Heat of formation + Delta-G solvation = -11.533185 kcal Electronic energy + Delta-G solvation = -26674.986305 eV Core-core repulsion = 22983.473847 eV Total energy + Delta-G solvation = -3691.512458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69937 -39.68881 -38.07653 -34.38865 -33.70518 -33.20248 -32.48788 -31.54142 -30.04125 -28.14576 -27.62119 -25.95012 -25.64188 -23.52157 -22.81193 -22.01863 -20.54764 -20.10772 -18.01303 -17.50458 -16.81684 -16.57295 -16.40659 -16.13955 -15.51110 -15.14288 -15.00467 -14.78180 -14.46720 -14.11727 -13.96408 -13.86858 -13.57071 -13.31387 -13.25880 -13.00590 -12.84686 -12.81932 -12.63072 -12.40613 -12.28982 -11.90718 -11.70441 -11.39543 -11.31830 -11.22818 -11.05300 -11.01932 -10.66553 -9.97597 -9.90940 -9.67055 -9.63207 -9.14014 -9.08021 -9.04104 -8.77704 -8.56483 -6.98049 -6.33727 -4.06124 0.85231 1.06359 2.67535 2.86610 3.21050 3.29343 3.45885 3.47737 3.58293 3.92311 4.10411 4.28371 4.37609 4.41250 4.57867 4.60896 4.66507 4.74568 4.78375 4.81862 5.05305 5.08347 5.09254 5.15274 5.18444 5.30031 5.38304 5.40779 5.43045 5.46526 5.50292 5.58490 5.66999 5.67909 5.72257 5.84838 5.89821 5.91965 5.97442 6.04984 6.08509 6.34971 6.48653 6.59199 6.91966 7.44207 7.78615 7.89296 8.36403 8.37386 9.12341 10.75505 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002812 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.233327 B = 9954.394569 C =11741.852990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.083 3.917 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.124 4.124 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.669 5.669 20 C 0.093 3.907 21 C -0.139 4.139 22 C -0.064 4.064 23 C -0.179 4.179 24 C 0.102 3.898 25 N -0.490 5.490 26 C 0.148 3.852 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.271 0.729 39 H 0.341 0.659 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.600 -13.999 5.655 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.034 4.034 4 H 0.111 0.889 5 C -0.042 4.042 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.275 4.275 10 S 0.086 5.914 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.299 5.299 20 C -0.036 4.036 21 C -0.142 4.142 22 C -0.090 4.090 23 C -0.198 4.198 24 C -0.055 4.055 25 N -0.200 5.200 26 C 0.010 3.990 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.160 0.840 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.171 0.829 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.565 -15.899 5.818 27.417 hybrid contribution 1.489 1.920 -0.285 2.446 sum -20.076 -13.979 5.532 25.082 Atomic orbital electron populations 1.21677 0.94686 1.00933 1.02814 1.21516 0.97104 0.94297 1.02340 1.21965 0.91623 0.97057 0.92715 0.88911 1.22054 0.95256 0.84075 1.02858 1.45958 1.07736 1.09056 1.76593 1.20292 0.81533 0.91007 0.75513 1.90710 1.55474 1.46166 1.46703 1.23277 1.03181 0.95410 1.05637 1.84810 0.97839 1.13021 1.95752 1.22303 0.97284 0.89789 1.57605 0.89400 1.24713 0.98271 0.95047 0.93255 1.69939 1.21498 1.12528 1.47634 0.86737 0.82134 0.83061 0.79931 1.19176 1.19890 1.15963 1.60729 1.61006 1.07010 1.01204 1.20949 0.97626 0.98134 0.86876 1.20578 0.95514 0.99644 0.98419 1.21622 0.99208 0.93422 0.94796 1.22151 0.98591 1.01829 0.97273 1.22745 0.90120 0.93933 0.98724 1.67553 1.34540 1.07443 1.10436 1.21133 0.92820 0.94733 0.90320 1.20731 0.97448 0.96854 1.00596 0.91399 0.92957 0.93322 0.91363 0.91647 0.91250 0.91057 0.77080 0.88509 0.88621 0.91891 0.84025 0.93134 0.89271 0.84834 0.84665 0.82864 0.89867 0.90576 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.75 37.16 0.36 -0.46 16 2 C -0.11 -0.69 5.28 -26.73 -0.14 -0.83 16 3 C 0.08 0.52 2.71 -67.72 -0.18 0.33 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 5 C 0.08 0.81 4.52 -4.04 -0.02 0.79 16 6 N -0.74 -8.27 5.37 -60.30 -0.32 -8.59 16 7 C 0.53 8.83 7.85 -10.99 -0.09 8.74 16 8 O -0.52 -10.70 15.86 5.55 0.09 -10.61 16 9 C -0.12 -2.30 6.16 36.01 0.22 -2.07 16 10 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 11 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 12 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 15 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 19 N -0.67 -4.55 5.92 -107.99 -0.64 -5.19 16 20 C 0.09 0.73 4.45 -4.98 -0.02 0.70 16 21 C -0.14 -1.29 5.37 -104.48 -0.56 -1.85 16 22 C -0.06 -0.62 9.82 -39.28 -0.39 -1.00 16 23 C -0.18 -1.64 10.11 -39.44 -0.40 -2.04 16 24 C 0.10 0.97 11.18 -17.54 -0.20 0.78 16 25 N -0.49 -5.42 10.27 -9.47 -0.10 -5.52 16 26 C 0.15 1.46 6.78 -82.59 -0.56 0.90 16 27 C -0.10 -0.75 9.49 36.01 0.34 -0.41 16 28 H 0.07 0.41 7.46 -51.94 -0.39 0.02 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 6.32 -51.93 -0.33 0.08 16 33 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 3.43 7.21 -40.82 -0.29 3.14 16 36 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 37 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.34 2.40 7.34 -39.30 -0.29 2.11 16 40 H 0.05 0.47 6.04 -51.93 -0.31 0.16 16 41 H 0.09 0.64 4.75 -51.93 -0.25 0.40 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.48 5.95 -51.93 -0.31 0.17 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -33.96 393.06 -9.55 -43.52 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.16 Total: 2.87 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.41 Total: -8.24 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.28 Total: -44.82 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.96 -9.55 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.985 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds