Wall clock time and date at job start Tue Mar 31 2020 19:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.09000 * 109.46868 * 305.24954 * 3 2 1 5 5 C 1.52996 * 109.46916 * 185.25569 * 3 2 1 6 6 N 1.46501 * 109.47114 * 185.00055 * 5 3 2 7 7 C 1.34774 * 120.00302 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00258 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.46973 * 180.02562 * 9 7 6 11 11 C 1.76204 * 99.99905 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00096 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00094 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99641 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99869 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46941 * 90.00177 * 15 13 11 17 17 H 1.48502 * 109.47084 * 209.99785 * 15 13 11 18 18 H 1.48497 * 109.47336 * 329.99945 * 15 13 11 19 19 N 1.46901 * 109.47396 * 65.25068 * 3 2 1 20 20 C 1.46900 * 110.99728 * 63.85497 * 19 3 2 21 21 C 1.50698 * 109.46988 * 176.36421 * 20 19 3 22 22 C 1.38678 * 120.42058 * 260.30226 * 21 20 19 23 23 C 1.38628 * 118.42058 * 180.26183 * 22 21 20 24 24 C 1.38229 * 119.16053 * 359.44215 * 23 22 21 25 25 N 1.31859 * 120.76068 * 0.29774 * 24 23 22 26 26 C 1.31879 * 121.72851 * 359.97438 * 25 24 23 27 27 C 1.50700 * 119.61812 * 179.97438 * 26 25 24 28 28 H 1.08988 * 109.47187 * 295.04561 * 1 2 3 29 29 H 1.09006 * 109.46928 * 55.05253 * 1 2 3 30 30 H 1.09003 * 109.46780 * 175.04200 * 1 2 3 31 31 H 1.09001 * 109.47184 * 239.99579 * 2 1 3 32 32 H 1.08997 * 109.46762 * 119.99708 * 2 1 3 33 33 H 1.09001 * 109.47028 * 304.99282 * 5 3 2 34 34 H 1.08998 * 109.47710 * 64.99491 * 5 3 2 35 35 H 0.97001 * 120.00226 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.46734 * 300.00160 * 9 7 6 37 37 H 1.08997 * 109.47154 * 60.00398 * 9 7 6 38 38 H 0.97006 * 119.99363 * 180.02562 * 14 13 11 39 39 H 1.00894 * 110.99856 * 187.80837 * 19 3 2 40 40 H 1.09004 * 109.46934 * 56.36655 * 20 19 3 41 41 H 1.09001 * 109.47288 * 296.36978 * 20 19 3 42 42 H 1.08002 * 120.78798 * 359.97438 * 22 21 20 43 43 H 1.07992 * 120.41894 * 179.71729 * 23 22 21 44 44 H 1.07996 * 119.61920 * 180.27253 * 24 23 22 45 45 H 1.09001 * 109.46867 * 89.99894 * 27 26 25 46 46 H 1.08994 * 109.47350 * 209.99970 * 27 26 25 47 47 H 1.09004 * 109.46961 * 330.00401 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6019 1.9827 -0.8392 5 6 3.5643 1.4445 -0.1321 6 7 4.0630 2.8168 -0.0124 7 6 5.3853 3.0631 -0.0975 8 8 6.1623 2.1486 -0.2736 9 6 5.8983 4.4748 0.0251 10 16 7.7016 4.4771 -0.1310 11 6 8.0217 6.2009 0.0444 12 1 7.2035 6.8893 0.1970 13 6 9.3253 6.6740 -0.0123 14 7 9.5643 7.9617 0.1192 15 14 10.7403 5.4834 -0.2755 16 1 10.9955 5.3317 -1.7305 17 1 11.9599 6.0094 0.3887 18 1 10.3906 4.1625 0.3061 19 7 1.6566 2.0975 1.2578 20 6 2.3039 1.4505 2.4068 21 6 1.9591 2.2022 3.6665 22 6 2.8570 3.1072 4.2123 23 6 2.4994 3.7718 5.3751 24 6 1.2637 3.5209 5.9415 25 7 0.4327 2.6573 5.3917 26 6 0.7416 2.0031 4.2890 27 6 -0.2442 1.0262 3.7017 28 1 -0.3633 0.4350 0.9309 29 1 -0.3633 0.5887 -0.8424 30 1 -0.3633 -1.0239 -0.0888 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9982 0.8302 0.6569 34 1 3.8453 1.0392 -1.1041 35 1 3.4416 3.5482 0.1281 36 1 5.4648 5.0887 -0.7644 37 1 5.6169 4.8805 0.9968 38 1 10.4754 8.2924 0.0792 39 1 1.8687 3.0835 1.2312 40 1 3.3847 1.4553 2.2652 41 1 1.9530 0.4218 2.4899 42 1 3.8141 3.2864 3.7451 43 1 3.1759 4.4800 5.8303 44 1 0.9757 4.0378 6.8449 45 1 -0.8940 1.5452 2.9970 46 1 0.2949 0.2337 3.1828 47 1 -0.8466 0.5934 4.5004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753467141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:01 Heat of formation + Delta-G solvation = -35.354659 kcal Electronic energy + Delta-G solvation = -26676.019281 eV Core-core repulsion = 22983.473847 eV Total energy + Delta-G solvation = -3692.545435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42909 -40.80732 -38.95367 -35.36216 -34.69149 -34.45447 -33.89174 -32.18488 -31.32244 -28.89644 -28.41614 -27.84731 -26.62594 -24.21618 -23.51398 -22.70941 -21.76823 -20.76064 -19.89910 -18.25928 -17.86461 -17.54330 -17.38139 -17.12250 -17.03640 -16.59504 -15.96974 -15.66647 -15.43637 -15.30633 -14.98679 -14.82890 -14.77284 -14.47303 -14.04088 -13.96348 -13.80550 -13.66798 -13.36973 -13.31813 -13.22569 -13.03957 -12.90387 -12.77889 -12.70377 -12.25819 -12.04585 -11.88541 -11.73139 -11.54164 -11.19105 -11.04709 -10.71250 -10.55887 -10.39804 -10.21484 -9.76610 -9.41746 -9.01841 -8.53485 -6.24332 0.14923 0.32800 0.96629 1.29714 1.44677 1.51919 1.53648 2.16393 2.23443 2.68541 2.78413 2.85001 3.26886 3.46363 3.70286 3.77280 3.81535 3.90308 3.97947 4.07968 4.12833 4.17967 4.26360 4.42955 4.43113 4.51001 4.52408 4.71057 4.71942 4.75705 4.79904 4.82710 4.93916 4.98535 5.03594 5.26118 5.27421 5.28368 5.32912 5.35034 5.42147 5.63211 5.68833 5.82157 5.95550 6.09684 6.30443 6.37458 6.91869 7.07014 7.12954 8.58956 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002812 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.233327 B = 9954.394569 C =11741.852990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.090 3.910 4 H 0.105 0.895 5 C 0.085 3.915 6 N -0.711 5.711 7 C 0.536 3.464 8 O -0.561 6.561 9 C -0.112 4.112 10 S -0.174 6.174 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.046 3.954 14 N -0.917 5.917 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.260 1.260 18 H -0.237 1.237 19 N -0.661 5.661 20 C 0.101 3.899 21 C -0.141 4.141 22 C -0.077 4.077 23 C -0.184 4.184 24 C 0.092 3.908 25 N -0.514 5.514 26 C 0.135 3.865 27 C -0.094 4.094 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.277 0.723 39 H 0.342 0.658 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.150 0.850 44 H 0.174 0.826 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 -15.238 5.439 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.021 4.021 4 H 0.123 0.877 5 C -0.041 4.041 6 N -0.365 5.365 7 C 0.322 3.678 8 O -0.439 6.439 9 C -0.263 4.263 10 S 0.052 5.948 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.160 4.160 14 N -0.555 5.555 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.160 1.160 19 N -0.292 5.292 20 C -0.028 4.028 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.203 4.203 24 C -0.065 4.065 25 N -0.224 5.224 26 C -0.003 4.003 27 C -0.151 4.151 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.161 0.839 40 H 0.055 0.945 41 H 0.116 0.884 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.191 0.809 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.984 -17.123 5.610 29.205 hybrid contribution 1.732 2.312 -0.185 2.894 sum -21.252 -14.811 5.424 26.466 Atomic orbital electron populations 1.21637 0.94096 1.01297 1.02681 1.21515 0.97465 0.93533 1.02590 1.21941 0.89245 0.97938 0.92929 0.87747 1.22215 0.97198 0.82462 1.02215 1.45691 1.06023 1.10625 1.74201 1.19920 0.82915 0.89476 0.75501 1.90702 1.56955 1.46911 1.49291 1.23266 0.98272 0.97494 1.07229 1.84730 1.04006 1.10137 1.95919 1.22451 0.96765 0.91462 1.56894 0.91964 1.25559 1.00760 0.96544 0.93114 1.70017 1.22475 1.14153 1.48858 0.85877 0.79548 0.80957 0.80054 1.18730 1.18390 1.16039 1.60736 1.60512 1.07005 1.00909 1.20867 0.96762 0.98491 0.86632 1.20684 0.95273 0.99525 0.98817 1.21768 0.99403 0.93936 0.95273 1.22357 0.98811 1.01972 0.97184 1.23127 0.90138 0.93821 0.99394 1.67587 1.35363 1.08250 1.11208 1.21503 0.93486 0.95037 0.90230 1.20746 0.97121 0.96658 1.00583 0.91621 0.92933 0.92801 0.91001 0.91639 0.92063 0.91677 0.75202 0.87002 0.86903 0.91359 0.83937 0.94482 0.88373 0.84894 0.83273 0.80892 0.89467 0.89365 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.75 71.98 0.70 -0.52 16 2 C -0.11 -1.08 5.28 30.60 0.16 -0.92 16 3 C 0.09 0.98 2.71 44.91 0.12 1.10 16 4 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 5 C 0.08 1.47 4.52 86.38 0.39 1.86 16 6 N -0.71 -14.44 5.37 -463.07 -2.49 -16.92 16 7 C 0.54 17.08 7.85 87.66 0.69 17.77 16 8 O -0.56 -22.83 15.86 -3.04 -0.05 -22.88 16 9 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 10 S -0.17 -8.59 18.55 -56.49 -1.05 -9.64 16 11 C -0.53 -30.22 10.04 67.95 0.68 -29.54 16 12 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 13 C 0.05 2.65 5.50 84.86 0.47 3.12 16 14 N -0.92 -55.37 13.97 21.65 0.30 -55.06 16 15 Si 0.91 44.50 27.74 68.60 1.90 46.40 16 16 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 19 N -0.66 -7.44 5.92 -495.58 -2.93 -10.37 16 20 C 0.10 1.40 4.45 85.56 0.38 1.79 16 21 C -0.14 -2.43 5.37 -19.77 -0.11 -2.53 16 22 C -0.08 -1.43 9.82 22.47 0.22 -1.21 16 23 C -0.18 -3.21 10.11 22.36 0.23 -2.98 16 24 C 0.09 1.67 11.18 84.69 0.95 2.62 16 25 N -0.51 -10.92 10.27 -183.89 -1.89 -12.81 16 26 C 0.14 2.51 6.78 42.54 0.29 2.80 16 27 C -0.09 -1.26 9.49 71.24 0.68 -0.58 16 28 H 0.06 0.62 7.46 -2.39 -0.02 0.60 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.65 6.32 -2.39 -0.02 0.63 16 33 H 0.06 1.23 6.56 -2.39 -0.02 1.21 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 5.99 7.21 -92.71 -0.67 5.32 16 36 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 37 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 38 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 39 H 0.34 3.92 7.34 -89.70 -0.66 3.27 16 40 H 0.04 0.63 6.04 -2.39 -0.01 0.62 16 41 H 0.10 1.20 4.75 -2.39 -0.01 1.19 16 42 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 0.93 5.95 -2.39 -0.01 0.92 16 47 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -73.71 393.06 -0.28 -74.00 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.37 Total: 18.08 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.28 Total: -10.79 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -7.00 Total: -95.17 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -73.71 -0.28 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.640 kcal (2) G-P(sol) polarization free energy of solvation -73.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds