Wall clock time and date at job start Tue Mar 31 2020 19:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35724 * 116.99875 * 2 1 4 4 C 1.39360 * 120.35894 * 359.96935 * 3 2 1 5 5 N 1.31301 * 120.87745 * 179.74573 * 4 3 2 6 6 C 1.32888 * 121.71869 * 0.57163 * 5 4 3 7 7 C 1.47755 * 119.68717 * 179.70787 * 6 5 4 8 8 O 1.21563 * 119.99798 * 179.73339 * 7 6 5 9 9 N 1.34777 * 119.99961 * 359.72780 * 7 6 5 10 10 C 1.46505 * 119.99770 * 185.20403 * 9 7 6 11 11 C 1.53000 * 109.46877 * 294.93572 * 10 9 7 12 12 C 1.52999 * 109.47329 * 54.93777 * 10 9 7 13 13 N 1.46505 * 109.47029 * 60.00003 * 12 10 9 14 14 C 1.36936 * 119.99593 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99550 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00216 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00274 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.46987 * 90.00279 * 18 16 14 20 20 H 1.48498 * 109.47309 * 210.00103 * 18 16 14 21 21 H 1.48496 * 109.47314 * 330.00381 * 18 16 14 22 22 C 1.52999 * 109.46697 * 174.93681 * 10 9 7 23 23 C 1.52998 * 117.52373 * 345.39292 * 22 10 9 24 24 C 1.53001 * 60.00345 * 107.47831 * 23 22 10 25 25 C 1.39714 * 120.62430 * 359.43462 * 6 5 4 26 26 F 1.35100 * 120.46672 * 180.29297 * 25 6 5 27 27 C 1.38695 * 119.07054 * 0.27378 * 25 6 5 28 28 H 1.09001 * 109.47227 * 60.00416 * 1 2 3 29 29 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47646 * 300.00418 * 1 2 3 31 31 H 1.07995 * 119.56360 * 0.03308 * 4 3 2 32 32 H 0.96997 * 120.00092 * 5.20420 * 9 7 6 33 33 H 1.09003 * 109.47215 * 300.00410 * 11 10 9 34 34 H 1.08997 * 109.47082 * 60.00229 * 11 10 9 35 35 H 1.09002 * 109.46808 * 180.02562 * 11 10 9 36 36 H 1.08992 * 109.47104 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47058 * 300.00033 * 12 10 9 38 38 H 0.97002 * 119.99966 * 359.97438 * 13 12 10 39 39 H 0.96996 * 120.00351 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54531 * 199.68667 * 22 10 9 41 41 H 1.08996 * 117.50056 * 214.97533 * 23 22 10 42 42 H 1.09002 * 117.49528 * 359.97438 * 23 22 10 43 43 H 1.08993 * 117.50193 * 252.51610 * 24 23 22 44 44 H 1.08996 * 117.49668 * 107.48880 * 24 23 22 45 45 H 1.08001 * 120.78862 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2934 2.3828 -0.0006 5 7 1.8789 3.5581 0.0044 6 6 3.2022 3.6794 -0.0011 7 6 3.8137 5.0245 -0.0016 8 8 5.0236 5.1421 -0.0017 9 7 3.0300 6.1210 -0.0022 10 6 3.6321 7.4516 -0.1178 11 6 4.4907 7.7319 1.1171 12 6 4.5077 7.5081 -1.3713 13 7 3.6854 7.2397 -2.5538 14 6 4.2565 7.2370 -3.7984 15 1 5.3128 7.4331 -3.9083 16 6 3.4773 6.9833 -4.9188 17 7 4.0259 6.9811 -6.1152 18 14 1.6501 6.6448 -4.7287 19 1 0.8993 7.9240 -4.8031 20 1 1.1981 5.7416 -5.8173 21 1 1.4002 5.9998 -3.4147 22 6 2.5266 8.5044 -0.2200 23 6 1.1105 8.0148 -0.5292 24 6 1.4576 8.5148 0.8745 25 6 4.0208 2.5472 -0.0006 26 9 5.3658 2.6743 -0.0001 27 6 3.4332 1.2908 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2151 2.3248 -0.0006 32 1 2.0674 6.0292 0.0740 33 1 3.8670 7.6916 2.0101 34 1 5.2782 6.9818 1.1900 35 1 4.9384 8.7220 1.0313 36 1 4.9552 8.4981 -1.4575 37 1 5.2952 6.7580 -1.2984 38 1 2.7367 7.0632 -2.4549 39 1 3.4816 6.8035 -6.8981 40 1 2.8294 9.4649 -0.6371 41 1 0.4815 8.6531 -1.1497 42 1 0.9661 6.9424 -0.6602 43 1 1.5417 7.7714 1.6671 44 1 1.0570 9.4821 1.1775 45 1 4.0394 0.3970 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753523060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:06 Heat of formation + Delta-G solvation = -20.627980 kcal Electronic energy + Delta-G solvation = -30551.029624 eV Core-core repulsion = 26292.909610 eV Total energy + Delta-G solvation = -4258.120014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.02116 -41.08493 -40.14663 -38.54151 -37.45636 -34.62750 -33.46787 -32.66415 -31.64345 -30.73051 -29.94146 -28.00687 -25.95110 -24.92157 -23.65459 -23.05011 -22.25806 -21.70433 -21.19399 -19.00440 -18.90009 -18.42254 -17.92826 -17.43564 -16.54381 -16.46457 -15.75257 -15.65005 -15.45163 -15.02591 -14.78823 -14.60155 -14.41842 -14.04453 -13.75528 -13.56091 -13.41140 -13.05107 -12.94390 -12.70438 -12.46244 -12.44449 -12.28231 -12.04663 -11.75331 -11.62378 -11.38445 -11.05130 -10.85270 -10.71447 -10.26384 -10.19753 -10.01081 -9.96442 -9.80728 -9.51813 -9.46882 -8.89242 -8.74473 -8.59300 -7.06762 -5.66792 -2.99246 0.36763 0.69995 2.51941 2.71644 3.19034 3.40065 3.42783 3.47082 3.67162 3.86964 3.92493 3.95571 4.14033 4.46695 4.60448 4.66240 4.66618 4.68449 4.73082 4.98546 5.00087 5.02075 5.04981 5.21041 5.35703 5.51600 5.52121 5.64595 5.69759 5.71720 5.88601 6.01389 6.06142 6.09701 6.13691 6.18541 6.31617 6.52230 6.55553 6.62762 6.85251 7.07074 7.29881 7.80661 8.12635 8.45734 8.52911 9.33884 10.06113 10.28078 11.52340 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.004707 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.118489 B = 5946.638474 C = 6774.235014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.128 3.872 4 C 0.008 3.992 5 N -0.393 5.393 6 C 0.015 3.985 7 C 0.580 3.420 8 O -0.510 6.510 9 N -0.700 5.700 10 C 0.194 3.806 11 C -0.153 4.153 12 C 0.145 3.855 13 N -0.750 5.750 14 C -0.231 4.231 15 H 0.090 0.910 16 C 0.001 3.999 17 N -0.937 5.937 18 Si 0.878 3.122 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.277 1.277 22 C -0.140 4.140 23 C -0.184 4.184 24 C -0.181 4.181 25 C 0.158 3.842 26 F -0.095 7.095 27 C -0.161 4.161 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.172 0.828 32 H 0.404 0.596 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.361 0.639 39 H 0.257 0.743 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.949 -10.081 19.165 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.079 3.921 4 C -0.155 4.155 5 N -0.105 5.105 6 C -0.125 4.125 7 C 0.364 3.636 8 O -0.385 6.385 9 N -0.355 5.355 10 C 0.109 3.891 11 C -0.212 4.212 12 C 0.017 3.983 13 N -0.395 5.395 14 C -0.361 4.361 15 H 0.107 0.893 16 C -0.194 4.194 17 N -0.587 5.587 18 Si 0.709 3.291 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.203 1.203 22 C -0.158 4.158 23 C -0.222 4.222 24 C -0.218 4.218 25 C 0.135 3.865 26 F -0.073 7.073 27 C -0.187 4.187 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.189 0.811 32 H 0.243 0.757 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.194 0.806 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.247 -9.383 18.982 23.105 hybrid contribution -1.521 -1.066 -0.255 1.874 sum -10.767 -10.449 18.727 23.996 Atomic orbital electron populations 1.23260 0.77071 1.04934 1.02193 1.86060 1.22375 1.25493 1.87461 1.19976 0.92070 0.86033 0.94063 1.23025 1.01020 0.86498 1.04928 1.67467 1.09531 1.26869 1.06624 1.21410 0.89292 0.94489 1.07302 1.17307 0.86384 0.82784 0.77154 1.90802 1.13069 1.85876 1.48750 1.45998 1.10774 1.05186 1.73508 1.20218 0.92315 0.79742 0.96848 1.22087 1.00356 1.02803 0.95931 1.21112 0.93577 0.99573 0.84025 1.42599 1.07240 1.87089 1.02617 1.19100 0.95453 1.39525 0.82037 0.89258 1.24616 0.97137 1.02440 0.95191 1.69701 1.34708 1.57058 0.97190 0.86612 0.87732 0.77967 0.76791 1.21122 1.22015 1.20350 1.22486 0.89571 1.00695 1.03056 1.23015 0.98761 1.01616 0.98760 1.22997 1.03771 1.02862 0.92140 1.18222 0.78906 0.92691 0.96692 1.91662 1.27012 1.96396 1.92185 1.20818 0.92869 0.97771 1.07272 0.91718 0.87428 0.91875 0.81145 0.75748 0.92809 0.90440 0.91516 0.94821 0.92486 0.80582 0.93301 0.86067 0.88332 0.88715 0.88943 0.88697 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.30 -2.66 10.50 -18.88 -0.20 -2.86 16 3 C 0.13 1.36 6.72 -38.86 -0.26 1.10 16 4 C 0.01 0.08 10.21 -17.36 -0.18 -0.09 16 5 N -0.39 -5.56 9.53 -9.63 -0.09 -5.65 16 6 C 0.01 0.24 6.75 -82.97 -0.56 -0.32 16 7 C 0.58 10.68 7.21 -12.37 -0.09 10.59 16 8 O -0.51 -10.60 11.54 5.31 0.06 -10.54 16 9 N -0.70 -11.69 4.48 -48.57 -0.22 -11.91 16 10 C 0.19 3.23 0.52 -131.82 -0.07 3.16 16 11 C -0.15 -2.21 8.37 37.16 0.31 -1.90 16 12 C 0.14 3.09 4.89 -4.04 -0.02 3.07 16 13 N -0.75 -18.76 5.03 -59.91 -0.30 -19.06 16 14 C -0.23 -6.89 10.47 -15.06 -0.16 -7.04 16 15 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 16 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 17 N -0.94 -30.56 13.97 55.49 0.78 -29.79 16 18 Si 0.88 22.95 27.74 -169.99 -4.71 18.23 16 19 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 21 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 22 C -0.14 -2.05 4.48 -90.62 -0.41 -2.45 16 23 C -0.18 -2.58 8.98 -26.73 -0.24 -2.82 16 24 C -0.18 -2.08 9.53 -26.73 -0.25 -2.34 16 25 C 0.16 2.38 7.31 -38.86 -0.28 2.10 16 26 F -0.09 -1.59 15.54 2.25 0.03 -1.55 16 27 C -0.16 -1.90 10.10 -39.11 -0.40 -2.29 16 28 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 29 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.17 1.24 6.31 -52.49 -0.33 0.91 16 32 H 0.40 6.15 4.97 -40.82 -0.20 5.95 16 33 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 34 H 0.08 1.25 6.37 -51.93 -0.33 0.92 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.36 5.99 -51.93 -0.31 1.05 16 38 H 0.36 8.74 4.29 -40.82 -0.18 8.56 16 39 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 40 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 1.39 5.96 -51.93 -0.31 1.08 16 43 H 0.09 1.01 7.99 -51.93 -0.42 0.59 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -36.22 368.11 -6.63 -42.85 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.82 Total: 12.95 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.71 Total: 1.78 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.16 Total: -66.41 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.14 Total: -13.40 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.03 Total: -1.55 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.22 -6.63 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.224 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds