Wall clock time and date at job start Tue Mar 31 2020 19:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35724 * 116.99875 * 2 1 4 4 C 1.39360 * 120.35894 * 359.96935 * 3 2 1 5 5 N 1.31301 * 120.87745 * 179.74573 * 4 3 2 6 6 C 1.32888 * 121.71869 * 0.57163 * 5 4 3 7 7 C 1.47755 * 119.68717 * 179.70787 * 6 5 4 8 8 O 1.21563 * 119.99798 * 179.73339 * 7 6 5 9 9 N 1.34777 * 119.99961 * 359.72780 * 7 6 5 10 10 C 1.46505 * 119.99770 * 185.20403 * 9 7 6 11 11 C 1.53000 * 109.46877 * 294.93572 * 10 9 7 12 12 C 1.52999 * 109.47329 * 54.93777 * 10 9 7 13 13 N 1.46505 * 109.47029 * 60.00003 * 12 10 9 14 14 C 1.36936 * 119.99593 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99550 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00216 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00274 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.46987 * 90.00279 * 18 16 14 20 20 H 1.48498 * 109.47309 * 210.00103 * 18 16 14 21 21 H 1.48496 * 109.47314 * 330.00381 * 18 16 14 22 22 C 1.52999 * 109.46697 * 174.93681 * 10 9 7 23 23 C 1.52998 * 117.52373 * 345.39292 * 22 10 9 24 24 C 1.53001 * 60.00345 * 107.47831 * 23 22 10 25 25 C 1.39714 * 120.62430 * 359.43462 * 6 5 4 26 26 F 1.35100 * 120.46672 * 180.29297 * 25 6 5 27 27 C 1.38695 * 119.07054 * 0.27378 * 25 6 5 28 28 H 1.09001 * 109.47227 * 60.00416 * 1 2 3 29 29 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47646 * 300.00418 * 1 2 3 31 31 H 1.07995 * 119.56360 * 0.03308 * 4 3 2 32 32 H 0.96997 * 120.00092 * 5.20420 * 9 7 6 33 33 H 1.09003 * 109.47215 * 300.00410 * 11 10 9 34 34 H 1.08997 * 109.47082 * 60.00229 * 11 10 9 35 35 H 1.09002 * 109.46808 * 180.02562 * 11 10 9 36 36 H 1.08992 * 109.47104 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47058 * 300.00033 * 12 10 9 38 38 H 0.97002 * 119.99966 * 359.97438 * 13 12 10 39 39 H 0.96996 * 120.00351 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54531 * 199.68667 * 22 10 9 41 41 H 1.08996 * 117.50056 * 214.97533 * 23 22 10 42 42 H 1.09002 * 117.49528 * 359.97438 * 23 22 10 43 43 H 1.08993 * 117.50193 * 252.51610 * 24 23 22 44 44 H 1.08996 * 117.49668 * 107.48880 * 24 23 22 45 45 H 1.08001 * 120.78862 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2934 2.3828 -0.0006 5 7 1.8789 3.5581 0.0044 6 6 3.2022 3.6794 -0.0011 7 6 3.8137 5.0245 -0.0016 8 8 5.0236 5.1421 -0.0017 9 7 3.0300 6.1210 -0.0022 10 6 3.6321 7.4516 -0.1178 11 6 4.4907 7.7319 1.1171 12 6 4.5077 7.5081 -1.3713 13 7 3.6854 7.2397 -2.5538 14 6 4.2565 7.2370 -3.7984 15 1 5.3128 7.4331 -3.9083 16 6 3.4773 6.9833 -4.9188 17 7 4.0259 6.9811 -6.1152 18 14 1.6501 6.6448 -4.7287 19 1 0.8993 7.9240 -4.8031 20 1 1.1981 5.7416 -5.8173 21 1 1.4002 5.9998 -3.4147 22 6 2.5266 8.5044 -0.2200 23 6 1.1105 8.0148 -0.5292 24 6 1.4576 8.5148 0.8745 25 6 4.0208 2.5472 -0.0006 26 9 5.3658 2.6743 -0.0001 27 6 3.4332 1.2908 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2151 2.3248 -0.0006 32 1 2.0674 6.0292 0.0740 33 1 3.8670 7.6916 2.0101 34 1 5.2782 6.9818 1.1900 35 1 4.9384 8.7220 1.0313 36 1 4.9552 8.4981 -1.4575 37 1 5.2952 6.7580 -1.2984 38 1 2.7367 7.0632 -2.4549 39 1 3.4816 6.8035 -6.8981 40 1 2.8294 9.4649 -0.6371 41 1 0.4815 8.6531 -1.1497 42 1 0.9661 6.9424 -0.6602 43 1 1.5417 7.7714 1.6671 44 1 1.0570 9.4821 1.1775 45 1 4.0394 0.3970 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753523060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:06 Heat of formation + Delta-G solvation = -47.283393 kcal Electronic energy + Delta-G solvation = -30552.185489 eV Core-core repulsion = 26292.909610 eV Total energy + Delta-G solvation = -4259.275879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.19456 -42.08798 -41.31779 -39.46332 -38.64644 -36.43175 -34.94452 -33.79403 -33.28063 -32.31532 -31.13741 -28.51202 -27.72503 -25.98656 -24.85338 -24.23360 -23.69620 -23.20855 -22.33000 -20.48936 -19.82690 -19.62715 -19.48311 -18.77795 -17.43670 -17.42839 -16.97819 -16.72197 -16.62902 -16.52339 -15.96691 -15.93121 -15.77198 -15.48405 -15.06980 -14.95166 -14.43677 -14.36468 -14.26248 -14.10892 -13.90911 -13.89019 -13.46153 -13.05598 -12.94956 -12.86046 -12.54402 -12.49316 -12.36429 -12.21641 -12.09418 -11.85071 -11.33437 -11.18968 -11.06984 -11.02056 -10.77420 -10.69899 -10.07040 -9.70833 -9.26171 -8.04530 -5.36022 -0.67070 -0.24186 1.28653 1.34473 1.41513 1.56103 1.78455 2.01871 2.44584 2.51456 2.84992 2.89064 2.96498 3.25765 3.30624 3.47887 3.55931 3.64649 3.71357 3.88035 3.97607 4.00683 4.19863 4.37540 4.38415 4.40687 4.50455 4.54228 4.64765 4.71211 4.78953 4.82300 4.84921 4.92453 5.02061 5.09428 5.14574 5.20685 5.28317 5.33867 5.59158 5.73435 5.93430 6.19007 6.26686 6.55519 7.06522 7.14915 7.82165 8.06957 9.17845 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.004707 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.118489 B = 5946.638474 C = 6774.235014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.146 3.854 4 C 0.017 3.983 5 N -0.402 5.402 6 C -0.020 4.020 7 C 0.569 3.431 8 O -0.549 6.549 9 N -0.693 5.693 10 C 0.201 3.799 11 C -0.145 4.145 12 C 0.143 3.857 13 N -0.744 5.744 14 C -0.231 4.231 15 H 0.047 0.953 16 C -0.065 4.065 17 N -0.985 5.985 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.256 1.256 22 C -0.163 4.163 23 C -0.198 4.198 24 C -0.140 4.140 25 C 0.136 3.864 26 F -0.116 7.116 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.213 0.787 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.368 0.632 39 H 0.257 0.743 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 -11.114 21.323 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.096 3.904 4 C -0.147 4.147 5 N -0.114 5.114 6 C -0.157 4.157 7 C 0.355 3.645 8 O -0.426 6.426 9 N -0.348 5.348 10 C 0.115 3.885 11 C -0.204 4.204 12 C 0.015 3.985 13 N -0.390 5.390 14 C -0.362 4.362 15 H 0.066 0.934 16 C -0.256 4.256 17 N -0.636 5.636 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.221 1.221 21 H -0.181 1.181 22 C -0.182 4.182 23 C -0.235 4.235 24 C -0.177 4.177 25 C 0.113 3.887 26 F -0.094 7.094 27 C -0.187 4.187 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.253 0.747 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.202 0.798 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.138 0.862 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.657 -10.403 21.192 27.274 hybrid contribution -0.179 -0.899 -0.931 1.306 sum -13.837 -11.302 20.262 27.013 Atomic orbital electron populations 1.23699 0.74542 1.07032 1.03607 1.86093 1.24875 1.24194 1.86456 1.19987 0.91624 0.86916 0.91861 1.23721 1.02793 0.85521 1.02659 1.67448 1.08287 1.28464 1.07189 1.21122 0.90499 0.93521 1.10577 1.17794 0.86198 0.84096 0.76447 1.90774 1.14697 1.86652 1.50517 1.45966 1.11066 1.04819 1.72908 1.20082 0.92804 0.80685 0.94926 1.22017 0.99804 1.02678 0.95852 1.21174 0.93757 0.98198 0.85320 1.42467 1.07729 1.86865 1.01951 1.19041 0.93923 1.38873 0.84382 0.93447 1.25482 1.02850 1.02698 0.94548 1.69900 1.36934 1.58572 0.98220 0.85442 0.80725 0.78447 0.77515 1.19337 1.22132 1.18082 1.22395 0.89474 0.99747 1.06572 1.23095 0.97905 1.01374 1.01119 1.23073 0.99638 1.04078 0.90886 1.18497 0.78163 0.93879 0.98208 1.91599 1.28535 1.96607 1.92651 1.21007 0.93982 0.97077 1.06620 0.90767 0.85236 0.89882 0.77063 0.74738 0.90217 0.92816 0.90224 0.94934 0.95593 0.79752 0.93380 0.86473 0.87857 0.89419 0.87772 0.86218 0.79998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.82 113.37 1.11 1.14 16 2 O -0.31 -4.21 10.50 -90.46 -0.95 -5.16 16 3 C 0.15 2.69 6.72 22.73 0.15 2.85 16 4 C 0.02 0.31 10.21 85.04 0.87 1.18 16 5 N -0.40 -10.62 9.53 -184.39 -1.76 -12.38 16 6 C -0.02 -0.65 6.75 41.86 0.28 -0.37 16 7 C 0.57 21.60 7.21 86.76 0.63 22.23 16 8 O -0.55 -24.33 11.54 -3.91 -0.05 -24.37 16 9 N -0.69 -22.88 4.48 -425.84 -1.91 -24.78 16 10 C 0.20 6.62 0.52 3.60 0.00 6.62 16 11 C -0.15 -4.11 8.37 71.98 0.60 -3.51 16 12 C 0.14 6.34 4.89 86.38 0.42 6.76 16 13 N -0.74 -38.01 5.03 -343.46 -1.73 -39.74 16 14 C -0.23 -14.34 10.47 84.03 0.88 -13.46 16 15 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 16 C -0.06 -4.05 5.50 84.86 0.47 -3.58 16 17 N -0.99 -66.23 13.97 21.65 0.30 -65.93 16 18 Si 0.95 47.42 27.74 68.60 1.90 49.32 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 21 H -0.26 -11.70 6.52 99.48 0.65 -11.05 16 22 C -0.16 -4.47 4.48 -10.79 -0.05 -4.52 16 23 C -0.20 -4.96 8.98 30.59 0.27 -4.68 16 24 C -0.14 -2.68 9.53 30.60 0.29 -2.38 16 25 C 0.14 4.18 7.31 22.74 0.17 4.35 16 26 F -0.12 -4.15 15.54 44.97 0.70 -3.45 16 27 C -0.16 -3.61 10.10 22.57 0.23 -3.38 16 28 H 0.07 0.28 7.67 -2.39 -0.02 0.26 16 29 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.08 0.13 7.67 -2.39 -0.02 0.11 16 31 H 0.21 1.97 6.31 -2.91 -0.02 1.95 16 32 H 0.41 11.92 4.97 -92.71 -0.46 11.46 16 33 H 0.08 1.83 7.71 -2.39 -0.02 1.81 16 34 H 0.05 1.80 6.37 -2.39 -0.02 1.78 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 1.33 5.99 -2.39 -0.01 1.32 16 38 H 0.37 17.61 4.29 -92.71 -0.40 17.22 16 39 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 40 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.09 2.33 5.96 -2.39 -0.01 2.31 16 43 H 0.10 1.80 7.99 -2.39 -0.02 1.78 16 44 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -84.14 368.11 2.98 -81.16 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.13 Total: 36.10 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.33 Total: 9.24 kcal Atomic # 7 Polarization: -137.74 SS G_CDS: -5.09 Total: -142.83 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.99 Total: -29.53 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.90 Total: 49.32 kcal Total: -84.14 2.98 -81.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.873 kcal (2) G-P(sol) polarization free energy of solvation -84.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds