Wall clock time and date at job start Tue Mar 31 2020 19:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35723 * 117.00060 * 2 1 4 4 C 1.39359 * 120.35993 * 359.97438 * 3 2 1 5 5 N 1.31287 * 120.88075 * 180.02562 * 4 3 2 6 6 C 1.32895 * 121.71667 * 0.02562 * 5 4 3 7 7 C 1.47763 * 119.68324 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99573 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00182 * 359.97438 * 7 6 5 10 10 C 1.46494 * 119.99902 * 175.56955 * 9 7 6 11 11 C 1.52998 * 109.47122 * 174.06023 * 10 9 7 12 12 C 1.53002 * 109.47512 * 54.05845 * 10 9 7 13 13 N 1.46496 * 109.47170 * 59.99844 * 12 10 9 14 14 C 1.36936 * 120.00356 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99987 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99440 * 179.97438 * 16 14 13 18 18 Si 1.86789 * 120.00193 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47341 * 89.99973 * 18 16 14 20 20 H 1.48501 * 109.47008 * 209.99834 * 18 16 14 21 21 H 1.48505 * 109.47263 * 329.99731 * 18 16 14 22 22 C 1.53000 * 109.47206 * 294.05946 * 10 9 7 23 23 C 1.53002 * 117.49519 * 2.15685 * 22 10 9 24 24 C 1.53005 * 117.49668 * 293.49867 * 22 10 9 25 25 C 1.39715 * 120.62698 * 359.97438 * 6 5 4 26 26 F 1.35099 * 120.46397 * 180.02562 * 25 6 5 27 27 C 1.38689 * 119.06682 * 0.02562 * 25 6 5 28 28 H 1.09003 * 109.47312 * 60.00037 * 1 2 3 29 29 H 1.08999 * 109.47580 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47429 * 300.00355 * 1 2 3 31 31 H 1.08001 * 119.55760 * 359.74828 * 4 3 2 32 32 H 0.97001 * 119.99908 * 355.55849 * 9 7 6 33 33 H 1.08993 * 109.47412 * 59.99657 * 11 10 9 34 34 H 1.09000 * 109.47384 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.47110 * 299.99088 * 11 10 9 36 36 H 1.08999 * 109.47514 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47043 * 300.00448 * 12 10 9 38 38 H 0.97005 * 119.99968 * 0.02562 * 13 12 10 39 39 H 0.97005 * 119.99823 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.55447 * 147.83317 * 22 10 9 41 41 H 1.08997 * 117.50154 * 0.02562 * 23 22 10 42 42 H 1.09011 * 117.49188 * 145.02405 * 23 22 10 43 43 H 1.09003 * 117.50014 * 214.97680 * 24 22 10 44 44 H 1.08999 * 117.49961 * 0.02562 * 24 22 10 45 45 H 1.08002 * 120.78257 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2023 3.6792 -0.0016 7 6 3.8138 5.0244 -0.0027 8 8 5.0238 5.1420 -0.0027 9 7 3.0302 6.1209 -0.0037 10 6 3.6334 7.4524 0.0932 11 6 2.5485 8.5175 -0.0780 12 6 4.6867 7.6163 -1.0045 13 7 4.0531 7.4616 -2.3162 14 6 4.8042 7.5677 -3.4563 15 1 5.8639 7.7652 -3.3883 16 6 4.2039 7.4206 -4.6992 17 7 4.9259 7.5231 -5.7949 18 14 2.3714 7.0784 -4.8167 19 1 1.6313 8.3638 -4.8880 20 1 2.0944 6.2794 -6.0375 21 1 1.9316 6.3197 -3.6183 22 6 4.2952 7.6140 1.4631 23 6 4.2595 6.4135 2.4109 24 6 3.3820 7.6362 2.6906 25 6 4.0209 2.5470 -0.0011 26 9 5.3659 2.6741 -0.0011 27 6 3.4332 1.2907 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2151 2.3248 -0.0051 32 1 2.0668 6.0285 -0.0688 33 1 1.7982 8.4008 0.7039 34 1 2.9973 9.5082 -0.0063 35 1 2.0771 8.4025 -1.0541 36 1 5.1358 8.6068 -0.9321 37 1 5.4596 6.8575 -0.8826 38 1 3.1014 7.2838 -2.3773 39 1 4.5065 7.4199 -6.6635 40 1 5.1828 8.2462 1.4849 41 1 3.7650 5.5084 2.0583 42 1 5.1237 6.2561 3.0565 43 1 3.6691 8.2826 3.5199 44 1 2.3098 7.5352 2.5221 45 1 4.0395 0.3969 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753523061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:09 Heat of formation + Delta-G solvation = -15.957581 kcal Electronic energy + Delta-G solvation = -30532.066181 eV Core-core repulsion = 26274.148690 eV Total energy + Delta-G solvation = -4257.917490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.02958 -41.13081 -40.23255 -38.50406 -37.04311 -35.05826 -33.45398 -32.65107 -31.59487 -30.64644 -29.73087 -28.03035 -26.30465 -24.90951 -23.66097 -23.30817 -22.14857 -21.36439 -21.00197 -19.13735 -18.90163 -18.21022 -17.83748 -17.63805 -16.58267 -16.44841 -16.03798 -15.64426 -15.33598 -15.29565 -15.00775 -14.38306 -14.31612 -13.76835 -13.69304 -13.60458 -13.56520 -13.26271 -12.89225 -12.78405 -12.49313 -12.22700 -12.16152 -12.04032 -11.89170 -11.52784 -11.20562 -10.97983 -10.82769 -10.80247 -10.28954 -10.13595 -10.12860 -9.90573 -9.82806 -9.49786 -9.39072 -8.89892 -8.69846 -8.61187 -7.04704 -5.65781 -2.98338 0.35005 0.67706 2.49580 2.72822 3.20015 3.40649 3.42447 3.47925 3.65466 3.85476 3.91727 3.99436 4.11810 4.46358 4.59431 4.64910 4.65629 4.67208 4.76784 4.97037 5.02262 5.05726 5.11126 5.30815 5.36900 5.47732 5.52703 5.62839 5.66796 5.73824 5.78154 5.95301 6.03221 6.10810 6.15968 6.24899 6.31788 6.46058 6.57605 6.60448 6.88483 7.15530 7.28959 7.84878 8.13172 8.50945 8.54218 9.33726 10.06018 10.27028 11.53447 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.004788 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.477669 B = 5846.843593 C = 7366.768522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.127 3.873 4 C 0.007 3.993 5 N -0.392 5.392 6 C 0.012 3.988 7 C 0.579 3.421 8 O -0.499 6.499 9 N -0.700 5.700 10 C 0.195 3.805 11 C -0.148 4.148 12 C 0.142 3.858 13 N -0.750 5.750 14 C -0.229 4.229 15 H 0.090 0.910 16 C 0.000 4.000 17 N -0.938 5.938 18 Si 0.880 3.120 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.279 1.279 22 C -0.143 4.143 23 C -0.165 4.165 24 C -0.181 4.181 25 C 0.158 3.842 26 F -0.094 7.094 27 C -0.161 4.161 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.171 0.829 32 H 0.403 0.597 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.357 0.643 39 H 0.257 0.743 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -12.206 19.031 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.078 3.922 4 C -0.156 4.156 5 N -0.104 5.104 6 C -0.127 4.127 7 C 0.363 3.637 8 O -0.372 6.372 9 N -0.352 5.352 10 C 0.109 3.891 11 C -0.205 4.205 12 C 0.015 3.985 13 N -0.396 5.396 14 C -0.359 4.359 15 H 0.108 0.892 16 C -0.194 4.194 17 N -0.587 5.587 18 Si 0.711 3.289 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.205 1.205 22 C -0.163 4.163 23 C -0.202 4.202 24 C -0.218 4.218 25 C 0.134 3.866 26 F -0.072 7.072 27 C -0.188 4.188 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.188 0.812 32 H 0.238 0.762 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.191 0.809 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.089 -11.493 18.891 24.737 hybrid contribution -1.389 -1.112 -0.424 1.829 sum -12.478 -12.605 18.467 25.605 Atomic orbital electron populations 1.23256 0.77078 1.04930 1.02164 1.86061 1.22366 1.25519 1.87467 1.19980 0.92062 0.86041 0.94097 1.23025 1.01001 0.86521 1.05019 1.67485 1.09505 1.26796 1.06603 1.21512 0.89282 0.94634 1.07309 1.17216 0.86541 0.82695 0.77238 1.90841 1.12888 1.85528 1.47953 1.45784 1.10310 1.05062 1.74068 1.20196 0.94173 0.81036 0.93693 1.21993 0.97801 0.98716 1.02034 1.21195 0.94247 0.99782 0.83308 1.42617 1.07239 1.88160 1.01567 1.19089 0.93872 1.39822 0.83154 0.89241 1.24622 0.96980 1.02546 0.95299 1.69702 1.34415 1.57724 0.96843 0.86598 0.87625 0.77953 0.76757 1.21163 1.21951 1.20534 1.22557 1.01131 1.02550 0.90027 1.22926 1.01852 0.92845 1.02615 1.22968 0.97467 1.01883 0.99457 1.18243 0.78966 0.92701 0.96642 1.91670 1.26971 1.96387 1.92145 1.20826 0.92882 0.97799 1.07296 0.91756 0.87438 0.91872 0.81174 0.76160 0.92515 0.90455 0.91537 0.95138 0.91569 0.80947 0.93296 0.86954 0.89304 0.89288 0.89184 0.89111 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.30 -2.55 10.50 -18.88 -0.20 -2.74 16 3 C 0.13 1.30 6.72 -38.87 -0.26 1.04 16 4 C 0.01 0.07 10.21 -17.37 -0.18 -0.11 16 5 N -0.39 -5.25 9.53 -9.63 -0.09 -5.35 16 6 C 0.01 0.20 6.75 -82.96 -0.56 -0.36 16 7 C 0.58 10.40 4.83 -12.37 -0.06 10.34 16 8 O -0.50 -10.39 11.63 5.31 0.06 -10.33 16 9 N -0.70 -11.36 4.16 -48.57 -0.20 -11.56 16 10 C 0.19 3.17 0.55 -131.82 -0.07 3.10 16 11 C -0.15 -2.10 8.18 37.16 0.30 -1.79 16 12 C 0.14 3.01 4.81 -4.04 -0.02 3.00 16 13 N -0.75 -18.71 4.98 -59.91 -0.30 -19.01 16 14 C -0.23 -6.84 10.47 -15.06 -0.16 -7.00 16 15 H 0.09 2.88 8.06 -52.48 -0.42 2.46 16 16 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 17 N -0.94 -30.63 13.97 55.49 0.78 -29.86 16 18 Si 0.88 22.94 27.74 -169.99 -4.71 18.22 16 19 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 22 C -0.14 -2.04 4.89 -90.62 -0.44 -2.48 16 23 C -0.17 -2.26 8.62 -26.69 -0.23 -2.49 16 24 C -0.18 -2.09 9.68 -26.69 -0.26 -2.35 16 25 C 0.16 2.33 7.31 -38.86 -0.28 2.04 16 26 F -0.09 -1.57 15.54 2.25 0.03 -1.53 16 27 C -0.16 -1.85 10.10 -39.12 -0.40 -2.25 16 28 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 31 H 0.17 1.14 6.31 -52.49 -0.33 0.80 16 32 H 0.40 5.88 7.81 -40.82 -0.32 5.56 16 33 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.05 6.86 -51.93 -0.36 0.70 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.58 5.63 -51.93 -0.29 1.29 16 38 H 0.36 8.64 4.21 -40.82 -0.17 8.46 16 39 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 40 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 41 H 0.09 1.32 5.21 -51.93 -0.27 1.05 16 42 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.99 7.20 -51.93 -0.37 0.62 16 45 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -36.35 365.90 -6.65 -43.01 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.82 Total: 11.96 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.72 Total: 1.68 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.18 Total: -65.78 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.14 Total: -13.07 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.35 -6.65 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.050 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds