Wall clock time and date at job start Tue Mar 31 2020 19:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35723 * 117.00060 * 2 1 4 4 C 1.39359 * 120.35993 * 359.97438 * 3 2 1 5 5 N 1.31287 * 120.88075 * 180.02562 * 4 3 2 6 6 C 1.32895 * 121.71667 * 0.02562 * 5 4 3 7 7 C 1.47763 * 119.68324 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99573 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00182 * 359.97438 * 7 6 5 10 10 C 1.46494 * 119.99902 * 175.56955 * 9 7 6 11 11 C 1.52998 * 109.47122 * 174.06023 * 10 9 7 12 12 C 1.53002 * 109.47512 * 54.05845 * 10 9 7 13 13 N 1.46496 * 109.47170 * 59.99844 * 12 10 9 14 14 C 1.36936 * 120.00356 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99987 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99440 * 179.97438 * 16 14 13 18 18 Si 1.86789 * 120.00193 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47341 * 89.99973 * 18 16 14 20 20 H 1.48501 * 109.47008 * 209.99834 * 18 16 14 21 21 H 1.48505 * 109.47263 * 329.99731 * 18 16 14 22 22 C 1.53000 * 109.47206 * 294.05946 * 10 9 7 23 23 C 1.53002 * 117.49519 * 2.15685 * 22 10 9 24 24 C 1.53005 * 117.49668 * 293.49867 * 22 10 9 25 25 C 1.39715 * 120.62698 * 359.97438 * 6 5 4 26 26 F 1.35099 * 120.46397 * 180.02562 * 25 6 5 27 27 C 1.38689 * 119.06682 * 0.02562 * 25 6 5 28 28 H 1.09003 * 109.47312 * 60.00037 * 1 2 3 29 29 H 1.08999 * 109.47580 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47429 * 300.00355 * 1 2 3 31 31 H 1.08001 * 119.55760 * 359.74828 * 4 3 2 32 32 H 0.97001 * 119.99908 * 355.55849 * 9 7 6 33 33 H 1.08993 * 109.47412 * 59.99657 * 11 10 9 34 34 H 1.09000 * 109.47384 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.47110 * 299.99088 * 11 10 9 36 36 H 1.08999 * 109.47514 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47043 * 300.00448 * 12 10 9 38 38 H 0.97005 * 119.99968 * 0.02562 * 13 12 10 39 39 H 0.97005 * 119.99823 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.55447 * 147.83317 * 22 10 9 41 41 H 1.08997 * 117.50154 * 0.02562 * 23 22 10 42 42 H 1.09011 * 117.49188 * 145.02405 * 23 22 10 43 43 H 1.09003 * 117.50014 * 214.97680 * 24 22 10 44 44 H 1.08999 * 117.49961 * 0.02562 * 24 22 10 45 45 H 1.08002 * 120.78257 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2023 3.6792 -0.0016 7 6 3.8138 5.0244 -0.0027 8 8 5.0238 5.1420 -0.0027 9 7 3.0302 6.1209 -0.0037 10 6 3.6334 7.4524 0.0932 11 6 2.5485 8.5175 -0.0780 12 6 4.6867 7.6163 -1.0045 13 7 4.0531 7.4616 -2.3162 14 6 4.8042 7.5677 -3.4563 15 1 5.8639 7.7652 -3.3883 16 6 4.2039 7.4206 -4.6992 17 7 4.9259 7.5231 -5.7949 18 14 2.3714 7.0784 -4.8167 19 1 1.6313 8.3638 -4.8880 20 1 2.0944 6.2794 -6.0375 21 1 1.9316 6.3197 -3.6183 22 6 4.2952 7.6140 1.4631 23 6 4.2595 6.4135 2.4109 24 6 3.3820 7.6362 2.6906 25 6 4.0209 2.5470 -0.0011 26 9 5.3659 2.6741 -0.0011 27 6 3.4332 1.2907 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2151 2.3248 -0.0051 32 1 2.0668 6.0285 -0.0688 33 1 1.7982 8.4008 0.7039 34 1 2.9973 9.5082 -0.0063 35 1 2.0771 8.4025 -1.0541 36 1 5.1358 8.6068 -0.9321 37 1 5.4596 6.8575 -0.8826 38 1 3.1014 7.2838 -2.3773 39 1 4.5065 7.4199 -6.6635 40 1 5.1828 8.2462 1.4849 41 1 3.7650 5.5084 2.0583 42 1 5.1237 6.2561 3.0565 43 1 3.6691 8.2826 3.5199 44 1 2.3098 7.5352 2.5221 45 1 4.0395 0.3969 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753523061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:08 Heat of formation + Delta-G solvation = -43.171296 kcal Electronic energy + Delta-G solvation = -30533.246256 eV Core-core repulsion = 26274.148690 eV Total energy + Delta-G solvation = -4259.097566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.18389 -42.12030 -41.34679 -39.34803 -38.28540 -36.73918 -34.99931 -33.78340 -33.26537 -32.03958 -31.02431 -28.49996 -27.91134 -25.96475 -25.25863 -24.35650 -23.15340 -22.89568 -22.32845 -20.54668 -19.77425 -19.69925 -19.28440 -18.72838 -17.54231 -17.39293 -17.14199 -16.80443 -16.58813 -16.42987 -16.38274 -15.78252 -15.51935 -15.30294 -15.10067 -14.90316 -14.72932 -14.42281 -14.26867 -13.89057 -13.71223 -13.57345 -13.40876 -13.23745 -12.94633 -12.86429 -12.54029 -12.43988 -12.33072 -12.13554 -11.99105 -11.83032 -11.41961 -11.20760 -11.02674 -10.96954 -10.76410 -10.54257 -10.05861 -9.69726 -9.22768 -8.03648 -5.35309 -0.64924 -0.22979 1.29651 1.36135 1.42716 1.63206 1.79904 2.04808 2.45520 2.53529 2.86249 2.91445 3.00948 3.26994 3.32083 3.50214 3.55433 3.72733 3.91400 3.95079 3.97749 4.01685 4.24516 4.32643 4.38787 4.40881 4.41546 4.54129 4.65539 4.78042 4.79732 4.83712 4.89072 4.93932 5.05771 5.11610 5.18815 5.27440 5.28879 5.32413 5.64549 5.75277 5.94760 6.19509 6.29765 6.61916 7.06767 7.24784 7.82158 8.05372 9.18899 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.004788 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.477669 B = 5846.843593 C = 7366.768522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.146 3.854 4 C 0.018 3.982 5 N -0.398 5.398 6 C -0.019 4.019 7 C 0.573 3.427 8 O -0.542 6.542 9 N -0.693 5.693 10 C 0.202 3.798 11 C -0.143 4.143 12 C 0.141 3.859 13 N -0.745 5.745 14 C -0.229 4.229 15 H 0.046 0.954 16 C -0.067 4.067 17 N -0.987 5.987 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.256 1.256 22 C -0.162 4.162 23 C -0.178 4.178 24 C -0.142 4.142 25 C 0.133 3.867 26 F -0.117 7.117 27 C -0.162 4.162 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.214 0.786 32 H 0.413 0.587 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.034 0.966 38 H 0.365 0.635 39 H 0.257 0.743 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 -13.352 20.969 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.217 6.217 3 C 0.096 3.904 4 C -0.146 4.146 5 N -0.110 5.110 6 C -0.157 4.157 7 C 0.359 3.641 8 O -0.419 6.419 9 N -0.345 5.345 10 C 0.116 3.884 11 C -0.201 4.201 12 C 0.014 3.986 13 N -0.391 5.391 14 C -0.361 4.361 15 H 0.064 0.936 16 C -0.257 4.257 17 N -0.638 5.638 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.222 1.222 21 H -0.181 1.181 22 C -0.182 4.182 23 C -0.215 4.215 24 C -0.179 4.179 25 C 0.110 3.890 26 F -0.096 7.096 27 C -0.189 4.189 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.250 0.750 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.199 0.801 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.892 -12.629 20.882 29.122 hybrid contribution 0.086 -0.927 -1.003 1.368 sum -15.806 -13.556 19.879 28.788 Atomic orbital electron populations 1.23694 0.74521 1.06995 1.03631 1.86094 1.24895 1.24273 1.86478 1.19989 0.91558 0.86967 0.91921 1.23726 1.02777 0.85480 1.02602 1.67471 1.08126 1.28318 1.07064 1.21183 0.90493 0.93543 1.10471 1.17646 0.86231 0.83962 0.76291 1.90813 1.14751 1.86353 1.50008 1.45740 1.10646 1.04627 1.73497 1.20053 0.93589 0.81979 0.92759 1.21994 0.97659 0.97965 1.02469 1.21239 0.95477 0.98334 0.83579 1.42485 1.07218 1.87862 1.01492 1.19016 0.92559 1.39205 0.85279 0.93608 1.25512 1.02899 1.02782 0.94555 1.69908 1.37036 1.59292 0.97534 0.85385 0.80521 0.78551 0.77251 1.19306 1.22206 1.18121 1.22444 1.02293 1.03491 0.89922 1.22901 1.02816 0.92966 1.02807 1.23070 0.97591 0.99555 0.97645 1.18535 0.78151 0.93976 0.98326 1.91602 1.28674 1.96612 1.92664 1.20997 0.94054 0.97049 1.06761 0.90626 0.85332 0.89942 0.76998 0.75003 0.88862 0.89886 0.93026 0.95479 0.94762 0.80085 0.93387 0.87559 0.90527 0.89423 0.86942 0.87516 0.80233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.82 113.37 1.11 1.13 16 2 O -0.31 -3.99 10.50 -90.46 -0.95 -4.94 16 3 C 0.15 2.55 6.72 22.73 0.15 2.70 16 4 C 0.02 0.31 10.21 85.04 0.87 1.18 16 5 N -0.40 -9.84 9.53 -184.39 -1.76 -11.60 16 6 C -0.02 -0.62 6.75 41.86 0.28 -0.33 16 7 C 0.57 21.16 4.83 86.76 0.42 21.58 16 8 O -0.54 -24.15 11.63 -3.93 -0.05 -24.20 16 9 N -0.69 -22.08 4.16 -425.84 -1.77 -23.85 16 10 C 0.20 6.49 0.55 3.60 0.00 6.49 16 11 C -0.14 -3.72 8.18 71.98 0.59 -3.13 16 12 C 0.14 6.22 4.81 86.38 0.42 6.63 16 13 N -0.74 -37.94 4.98 -343.45 -1.71 -39.65 16 14 C -0.23 -14.28 10.47 84.03 0.88 -13.40 16 15 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 16 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 17 N -0.99 -66.61 13.97 21.65 0.30 -66.31 16 18 Si 0.96 47.47 27.74 68.60 1.90 49.37 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 21 H -0.26 -11.62 6.52 99.48 0.65 -10.98 16 22 C -0.16 -4.52 4.89 -10.79 -0.05 -4.57 16 23 C -0.18 -4.78 8.62 30.62 0.26 -4.52 16 24 C -0.14 -2.85 9.68 30.62 0.30 -2.56 16 25 C 0.13 4.04 7.31 22.73 0.17 4.20 16 26 F -0.12 -4.23 15.54 44.97 0.70 -3.53 16 27 C -0.16 -3.56 10.10 22.57 0.23 -3.34 16 28 H 0.08 0.19 7.67 -2.39 -0.02 0.17 16 29 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.08 0.07 7.68 -2.39 -0.02 0.05 16 31 H 0.21 1.66 6.31 -2.91 -0.02 1.64 16 32 H 0.41 11.25 7.81 -92.71 -0.72 10.53 16 33 H 0.09 1.74 6.91 -2.39 -0.02 1.73 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.50 6.86 -2.39 -0.02 1.49 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 1.77 5.63 -2.39 -0.01 1.75 16 38 H 0.37 17.37 4.21 -92.70 -0.39 16.98 16 39 H 0.26 16.42 8.31 -92.70 -0.77 15.65 16 40 H 0.11 3.05 8.06 -2.39 -0.02 3.03 16 41 H 0.08 2.29 5.21 -2.39 -0.01 2.27 16 42 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.11 1.84 7.20 -2.39 -0.02 1.83 16 45 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -85.10 365.90 2.64 -82.45 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.12 Total: 33.88 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.09 Total: 8.37 kcal Atomic # 7 Polarization: -136.47 SS G_CDS: -4.94 Total: -141.41 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.00 Total: -29.13 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.70 Total: -3.53 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.90 Total: 49.37 kcal Total: -85.10 2.64 -82.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.281 kcal (2) G-P(sol) polarization free energy of solvation -85.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds