Wall clock time and date at job start Tue Mar 31 2020 19:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47433 * 2 1 4 4 C 1.37094 * 119.99828 * 84.91060 * 3 2 1 5 5 H 1.08006 * 119.99772 * 198.32580 * 4 3 2 6 6 C 1.38949 * 120.00536 * 18.31890 * 4 3 2 7 7 N 1.31411 * 119.99530 * 35.78537 * 6 4 3 8 8 Si 1.86795 * 120.00411 * 215.78504 * 6 4 3 9 9 H 1.48505 * 109.47180 * 94.99690 * 8 6 4 10 10 H 1.48503 * 109.47008 * 214.99522 * 8 6 4 11 11 H 1.48495 * 109.47220 * 334.99611 * 8 6 4 12 12 C 1.34780 * 119.99923 * 264.90848 * 3 2 1 13 13 O 1.21294 * 119.99600 * 186.48349 * 12 3 2 14 14 C 1.50694 * 119.99970 * 6.48351 * 12 3 2 15 15 C 1.53122 * 109.52157 * 157.18565 * 14 12 3 16 16 C 1.53036 * 109.27957 * 177.55973 * 15 14 12 17 17 N 1.46845 * 109.52377 * 300.82039 * 16 15 14 18 18 C 1.46895 * 111.00312 * 185.83997 * 17 16 15 19 19 C 1.50700 * 109.47545 * 169.99775 * 18 17 16 20 20 C 1.33634 * 122.75068 * 94.99633 * 19 18 17 21 21 S 1.76197 * 107.92660 * 179.97438 * 20 19 18 22 22 C 1.70977 * 90.28150 * 359.97438 * 21 20 19 23 23 C 1.50701 * 124.91332 * 180.26629 * 22 21 20 24 24 N 1.29026 * 110.16512 * 0.02562 * 22 21 20 25 25 C 1.46846 * 111.20039 * 61.73748 * 17 16 15 26 26 C 1.53033 * 109.52311 * 298.26351 * 25 17 16 27 27 H 1.09005 * 109.47293 * 64.67674 * 1 2 3 28 28 H 1.08997 * 109.47328 * 184.67759 * 1 2 3 29 29 H 1.09001 * 109.46928 * 304.68164 * 1 2 3 30 30 H 1.09006 * 109.47234 * 239.99875 * 2 1 3 31 31 H 1.08998 * 109.47355 * 120.00042 * 2 1 3 32 32 H 0.96997 * 120.00148 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.52604 * 37.06252 * 14 12 3 34 34 H 1.09002 * 109.50556 * 57.61441 * 15 14 12 35 35 H 1.09000 * 109.53552 * 297.52023 * 15 14 12 36 36 H 1.09003 * 109.46347 * 180.80575 * 16 15 14 37 37 H 1.09000 * 109.45366 * 60.83109 * 16 15 14 38 38 H 1.08999 * 109.47145 * 49.99877 * 18 17 16 39 39 H 1.08996 * 109.47275 * 289.99671 * 18 17 16 40 40 H 1.08007 * 126.03848 * 359.95772 * 20 19 18 41 41 H 1.08995 * 109.47203 * 269.69895 * 23 22 21 42 42 H 1.08996 * 109.47130 * 29.69663 * 23 22 21 43 43 H 1.09001 * 109.46909 * 149.69576 * 23 22 21 44 44 H 1.09004 * 109.45802 * 58.28001 * 25 17 16 45 45 H 1.08998 * 109.46276 * 178.24036 * 25 17 16 46 46 H 1.09000 * 109.50320 * 299.23296 * 26 25 17 47 47 H 1.09007 * 109.49865 * 179.11602 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1476 2.0625 1.1826 5 1 2.2158 3.1404 1.1801 6 6 2.1906 1.3665 2.3844 7 7 2.7895 0.1984 2.4460 8 14 1.3974 2.0911 3.9125 9 1 0.0210 1.5529 4.0584 10 1 2.2006 1.7268 5.1073 11 1 1.3399 3.5696 3.7866 12 6 2.3407 1.9820 -1.1626 13 8 2.8548 3.0806 -1.1554 14 6 2.0623 1.2889 -2.4714 15 6 1.9705 2.3287 -3.5917 16 6 1.7485 1.6146 -4.9269 17 7 2.8623 0.6920 -5.1812 18 6 2.7539 0.0915 -6.5174 19 6 4.0256 -0.6502 -6.8395 20 6 4.1709 -1.9618 -6.6282 21 16 5.7944 -2.4169 -7.1397 22 6 6.1162 -0.7985 -7.5875 23 6 7.4141 -0.3080 -8.1758 24 7 5.0852 -0.0588 -7.3534 25 6 2.9412 -0.3439 -4.1434 26 6 3.1987 0.3117 -2.7848 27 1 -0.3634 0.4396 -0.9289 28 1 -0.3634 -1.0242 0.0838 29 1 -0.3633 0.5848 0.8451 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.8193 -0.2877 3.2848 33 1 1.1208 0.7441 -2.4022 34 1 2.8975 2.9004 -3.6345 35 1 1.1362 3.0024 -3.3962 36 1 1.6970 2.3513 -5.7286 37 1 0.8144 1.0543 -4.8880 38 1 2.5940 0.8763 -7.2566 39 1 1.9138 -0.6026 -6.5367 40 1 3.4250 -2.6255 -6.2164 41 1 8.0812 0.0058 -7.3731 42 1 7.8822 -1.1119 -8.7439 43 1 7.2174 0.5367 -8.8360 44 1 2.0015 -0.8952 -4.1084 45 1 3.7558 -1.0297 -4.3761 46 1 4.1451 0.8517 -2.8149 47 1 3.2416 -0.4563 -2.0125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068306628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:20 Heat of formation + Delta-G solvation = 19.047605 kcal Electronic energy + Delta-G solvation = -27541.958480 eV Core-core repulsion = 23851.772104 eV Total energy + Delta-G solvation = -3690.186375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.28083 -39.30361 -37.66010 -35.05134 -33.80596 -32.24421 -31.62653 -30.58923 -29.44977 -28.63317 -27.34526 -25.26621 -23.66136 -22.95880 -22.34262 -21.92544 -19.94591 -19.78677 -18.47555 -17.73722 -16.82115 -16.10340 -16.01707 -15.57993 -15.05578 -14.76721 -14.70917 -14.33701 -14.16135 -13.93146 -13.68234 -13.34456 -13.05464 -12.91325 -12.78835 -12.71058 -12.55052 -12.36918 -12.21781 -11.89004 -11.83228 -11.56255 -11.21107 -11.15376 -11.05414 -10.94556 -10.62734 -10.41072 -10.29349 -10.08945 -10.04449 -9.84178 -9.75284 -9.52957 -8.98140 -8.91112 -8.27587 -8.19082 -7.56865 -6.36213 -3.75603 0.53763 1.19124 1.55512 2.60079 3.15517 3.28541 3.34119 3.86006 3.91279 4.06346 4.17014 4.68178 4.81895 4.95154 4.98617 5.04945 5.08141 5.08376 5.19643 5.22522 5.34142 5.43064 5.47169 5.58776 5.62150 5.66006 5.69546 5.80037 5.91675 5.96838 5.99031 6.02553 6.12945 6.26282 6.29775 6.36082 6.43433 6.57792 6.70566 6.84296 6.96071 7.12156 7.17945 7.33074 7.65929 7.66432 8.19820 8.55305 9.23684 9.50856 10.08838 10.63886 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.002582 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.006990 B =10841.104020 C =11150.438624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.075 3.925 3 N -0.439 5.439 4 C -0.313 4.313 5 H 0.100 0.900 6 C 0.037 3.963 7 N -0.852 5.852 8 Si 0.903 3.097 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.453 3.547 13 O -0.586 6.586 14 C -0.098 4.098 15 C -0.094 4.094 16 C 0.062 3.938 17 N -0.529 5.529 18 C 0.128 3.872 19 C 0.087 3.913 20 C -0.258 4.258 21 S 0.106 5.894 22 C 0.049 3.951 23 C -0.077 4.077 24 N -0.455 5.455 25 C 0.058 3.942 26 C -0.103 4.103 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.124 0.876 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.175 0.825 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -9.228 -19.804 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.049 4.049 3 N -0.157 5.157 4 C -0.440 4.440 5 H 0.117 0.883 6 C -0.167 4.167 7 N -0.490 5.490 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.242 3.758 13 O -0.470 6.470 14 C -0.120 4.120 15 C -0.132 4.132 16 C -0.066 4.066 17 N -0.254 5.254 18 C -0.002 4.002 19 C -0.045 4.045 20 C -0.398 4.398 21 S 0.361 5.639 22 C -0.229 4.229 23 C -0.138 4.138 24 N -0.170 5.170 25 C -0.070 4.070 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.192 0.808 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.820 -8.924 -19.768 21.872 hybrid contribution -2.017 -0.048 1.124 2.309 sum 0.803 -8.972 -18.645 20.707 Atomic orbital electron populations 1.22088 0.98195 1.00199 1.01216 1.21984 0.92619 0.85541 1.04740 1.43700 1.54967 1.11849 1.05144 1.19536 1.49668 0.92789 0.81974 0.88255 1.25064 0.96486 0.96308 0.98843 1.69979 1.35435 1.16186 1.27374 0.86276 0.79645 0.80087 0.81046 1.20442 1.21196 1.19261 1.20029 0.83126 0.87796 0.84889 1.90504 1.47044 1.22313 1.87174 1.21214 0.99065 0.97098 0.94649 1.21363 1.03511 0.97051 0.91284 1.22129 0.90660 0.95063 0.98738 1.61815 1.44807 1.18274 1.00519 1.20538 0.90176 0.97269 0.92203 1.20085 0.95530 0.90088 0.98819 1.26841 1.00761 0.99861 1.12307 1.83926 1.09028 1.12861 1.58109 1.27075 0.99711 0.93141 1.03010 1.20442 0.89806 1.02296 1.01207 1.66061 0.99219 1.37134 1.14589 1.22161 1.00014 0.93090 0.91724 1.21549 0.99208 0.98354 0.95027 0.94240 0.93392 0.92312 0.93038 0.85848 0.92251 0.90751 0.90016 0.91516 0.90669 0.95048 0.89064 0.93244 0.80797 0.89437 0.90253 0.89242 0.94944 0.90945 0.90781 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.12 37.15 0.38 -2.62 16 2 C 0.08 1.64 5.31 -4.04 -0.02 1.62 16 3 N -0.44 -11.18 2.63 -114.81 -0.30 -11.48 16 4 C -0.31 -8.77 9.13 -14.94 -0.14 -8.90 16 5 H 0.10 2.98 7.57 -52.48 -0.40 2.58 16 6 C 0.04 0.99 4.83 -17.47 -0.08 0.90 16 7 N -0.85 -22.65 11.13 55.50 0.62 -22.03 16 8 Si 0.90 20.52 29.67 -169.99 -5.04 15.48 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.45 11.20 6.75 -10.99 -0.07 11.12 16 13 O -0.59 -16.74 15.72 5.54 0.09 -16.65 16 14 C -0.10 -1.85 1.74 -91.65 -0.16 -2.01 16 15 C -0.09 -1.61 4.93 -26.65 -0.13 -1.74 16 16 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 17 N -0.53 -7.34 4.65 -236.12 -1.10 -8.44 16 18 C 0.13 1.49 5.41 -4.98 -0.03 1.46 16 19 C 0.09 1.06 5.57 -84.23 -0.47 0.59 16 20 C -0.26 -2.65 9.73 29.12 0.28 -2.37 16 21 S 0.11 0.97 23.18 -107.50 -2.49 -1.52 16 22 C 0.05 0.52 7.39 -13.46 -0.10 0.42 16 23 C -0.08 -0.55 10.46 36.01 0.38 -0.17 16 24 N -0.46 -5.98 10.53 -8.06 -0.08 -6.07 16 25 C 0.06 0.81 5.24 -3.84 -0.02 0.79 16 26 C -0.10 -1.79 5.12 -26.65 -0.14 -1.93 16 27 H 0.04 0.68 7.18 -51.93 -0.37 0.31 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.00 4.64 -51.93 -0.24 0.76 16 31 H 0.12 2.99 5.00 -51.93 -0.26 2.73 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 33 H 0.07 1.31 6.24 -51.93 -0.32 0.98 16 34 H 0.08 1.60 7.80 -51.93 -0.41 1.20 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 1.02 7.99 -51.93 -0.41 0.61 16 39 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.98 6.13 -51.93 -0.32 0.66 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.07 1.30 6.25 -51.92 -0.32 0.98 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -32.54 380.57 -10.18 -42.72 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.26 Total: 4.28 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.34 Total: -2.03 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.87 Total: -48.01 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.09 Total: -16.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.04 Total: 15.48 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.54 -10.18 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068306628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.771 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds