Wall clock time and date at job start Tue Mar 31 2020 19:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47064 * 2 1 4 4 C 1.34780 * 119.99899 * 265.37134 * 3 2 1 5 5 O 1.21686 * 119.99972 * 184.84847 * 4 3 2 6 6 C 1.46680 * 120.00074 * 4.85331 * 4 3 2 7 7 S 1.76220 * 126.13019 * 87.05683 * 6 4 3 8 8 C 1.70948 * 90.31201 * 180.02562 * 7 6 4 9 9 N 1.29430 * 110.39398 * 0.02562 * 8 7 6 10 10 C 1.30941 * 117.36298 * 359.70794 * 9 8 7 11 11 C 1.50699 * 122.90583 * 180.35219 * 10 9 8 12 12 C 1.53001 * 109.46928 * 241.90117 * 11 10 9 13 13 C 1.53002 * 109.47319 * 1.89993 * 11 10 9 14 14 C 1.53004 * 109.47454 * 121.89997 * 11 10 9 15 15 C 1.46504 * 120.00005 * 85.37297 * 3 2 1 16 16 C 1.53498 * 114.20367 * 120.00030 * 15 3 2 17 17 N 1.47065 * 87.98504 * 87.52054 * 16 15 3 18 18 C 1.36943 * 136.05618 * 207.08413 * 17 16 15 19 19 H 1.08002 * 119.99838 * 6.86183 * 18 17 16 20 20 C 1.38811 * 119.99630 * 186.86454 * 18 17 16 21 21 N 1.31613 * 120.00403 * 5.61946 * 20 18 17 22 22 Si 1.86803 * 119.99683 * 185.62135 * 20 18 17 23 23 H 1.48502 * 109.47035 * 265.00959 * 22 20 18 24 24 H 1.48500 * 109.46974 * 25.00216 * 22 20 18 25 25 H 1.48491 * 109.47230 * 145.00422 * 22 20 18 26 26 C 1.47065 * 87.88821 * 27.33799 * 17 16 15 27 27 H 1.09008 * 109.46654 * 59.99868 * 1 2 3 28 28 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47132 * 300.00242 * 1 2 3 30 30 H 1.08995 * 109.47290 * 240.00431 * 2 1 3 31 31 H 1.09002 * 109.47317 * 119.99553 * 2 1 3 32 32 H 1.08006 * 124.80668 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47295 * 61.84757 * 12 11 10 34 34 H 1.09000 * 109.47190 * 181.85308 * 12 11 10 35 35 H 1.08996 * 109.46945 * 301.85140 * 12 11 10 36 36 H 1.08996 * 109.47072 * 59.99773 * 13 11 10 37 37 H 1.09000 * 109.47524 * 180.02562 * 13 11 10 38 38 H 1.09010 * 109.46716 * 300.00524 * 13 11 10 39 39 H 1.08997 * 109.46772 * 68.02025 * 14 11 10 40 40 H 1.08994 * 109.47282 * 188.01791 * 14 11 10 41 41 H 1.08993 * 109.47014 * 308.02171 * 14 11 10 42 42 H 1.09000 * 113.28138 * 346.93229 * 15 3 2 43 43 H 1.09000 * 113.46800 * 332.74027 * 16 15 3 44 44 H 1.09002 * 113.46444 * 202.29636 * 16 15 3 45 45 H 0.96997 * 119.99994 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.46763 * 87.43817 * 26 17 16 47 47 H 1.08996 * 113.46996 * 217.87924 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3317 1.9852 -1.1634 5 8 2.8201 3.0998 -1.1581 6 6 2.0841 1.2991 -2.4360 7 16 0.5811 1.3258 -3.3555 8 6 1.2799 0.3163 -4.5450 9 7 2.5016 0.0272 -4.2301 10 6 2.9724 0.5336 -3.1182 11 6 4.3785 0.2851 -2.6363 12 6 4.3353 -0.4402 -1.2897 13 6 5.1223 -0.5785 -3.6570 14 6 5.1054 1.6214 -2.4727 15 6 2.1660 2.1060 1.2646 16 6 3.5975 2.5767 1.5568 17 7 3.2944 3.8002 0.7992 18 6 4.0116 4.7139 0.0738 19 1 5.0591 4.5427 -0.1255 20 6 3.3921 5.8601 -0.4051 21 7 2.1469 6.1241 -0.0702 22 14 4.3257 7.0278 -1.5250 23 1 4.9251 8.1181 -0.7141 24 1 5.4022 6.2848 -2.2280 25 1 3.3922 7.6089 -2.5229 26 6 1.8832 3.6143 1.1688 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.7734 -0.0317 -5.4332 33 1 3.8466 -1.4066 -1.4130 34 1 5.3515 -0.5907 -0.9254 35 1 3.7771 0.1602 -0.5715 36 1 5.1530 -0.0619 -4.6163 37 1 6.1392 -0.7587 -3.3083 38 1 4.6044 -1.5306 -3.7735 39 1 4.6618 2.1776 -1.6469 40 1 6.1592 1.4385 -2.2630 41 1 5.0129 2.2001 -3.3917 42 1 1.6780 1.6111 2.1043 43 1 4.3623 1.9556 1.0904 44 1 3.7876 2.7572 2.6148 45 1 1.7142 6.9252 -0.4045 46 1 1.6213 4.0683 2.1246 47 1 1.1875 3.8773 0.3721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952425504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:22 Heat of formation + Delta-G solvation = 116.418173 kcal Electronic energy + Delta-G solvation = -30185.473310 eV Core-core repulsion = 26499.509239 eV Total energy + Delta-G solvation = -3685.964071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67511 -39.37075 -36.54828 -35.76193 -35.12747 -31.88573 -30.13609 -29.65203 -27.41985 -27.10472 -26.92708 -25.55620 -24.51732 -23.48136 -22.96917 -21.65996 -20.66618 -19.02960 -17.70234 -17.26497 -16.73582 -16.35588 -15.56933 -15.09759 -14.71510 -14.56959 -14.46038 -14.11686 -13.66360 -13.59213 -13.44284 -13.36070 -13.29263 -12.86918 -12.48233 -12.36133 -12.13527 -11.84456 -11.78182 -11.56531 -11.31818 -11.19013 -11.11672 -10.95809 -10.75443 -10.69669 -10.66856 -10.52967 -10.30660 -9.92713 -9.76031 -9.59371 -9.26439 -9.20540 -8.94223 -8.62717 -8.21844 -7.82300 -6.38299 -5.48368 -2.71309 0.71256 1.34738 1.81896 2.87019 3.47514 3.53648 3.60009 3.61369 3.62119 4.23875 4.69688 4.86005 5.02357 5.06524 5.10923 5.19443 5.27037 5.44383 5.45891 5.49963 5.57844 5.63759 5.74332 5.80104 5.81405 5.90627 5.94585 5.96927 6.05246 6.08400 6.15106 6.24245 6.28402 6.29442 6.38452 6.46549 6.52352 6.58361 6.64274 6.89593 6.96860 7.31930 7.51917 7.76185 7.81022 8.02799 8.23246 9.08568 9.30196 10.02212 10.92576 11.72506 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.005981 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.678599 B = 4680.413228 C = 5195.495120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.547 3.453 5 O -0.378 6.378 6 C -0.237 4.237 7 S 0.165 5.835 8 C -0.005 4.005 9 N -0.460 5.460 10 C 0.100 3.900 11 C 0.008 3.992 12 C -0.152 4.152 13 C -0.124 4.124 14 C -0.152 4.152 15 C 0.086 3.914 16 C 0.101 3.899 17 N -0.576 5.576 18 C -0.160 4.160 19 H 0.069 0.931 20 C -0.003 4.003 21 N -0.924 5.924 22 Si 0.896 3.104 23 H -0.296 1.296 24 H -0.284 1.284 25 H -0.295 1.295 26 C 0.160 3.840 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.245 0.755 46 H 0.033 0.967 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -17.661 -2.993 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.328 3.672 5 O -0.242 6.242 6 C -0.362 4.362 7 S 0.419 5.581 8 C -0.300 4.300 9 N -0.173 5.173 10 C -0.036 4.036 11 C 0.005 3.995 12 C -0.210 4.210 13 C -0.182 4.182 14 C -0.209 4.209 15 C -0.019 4.019 16 C -0.028 4.028 17 N -0.301 5.301 18 C -0.287 4.287 19 H 0.087 0.913 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.729 3.271 23 H -0.224 1.224 24 H -0.210 1.210 25 H -0.222 1.222 26 C 0.032 3.968 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.214 0.786 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.887 -16.566 -3.534 17.379 hybrid contribution 1.046 0.453 -0.618 1.297 sum -2.841 -16.113 -4.152 16.880 Atomic orbital electron populations 1.22281 0.96466 1.01560 1.02776 1.21551 0.94147 0.83623 1.02528 1.47381 1.67081 1.12855 1.05353 1.17155 0.81502 0.87123 0.81458 1.91620 1.34325 1.14277 1.84003 1.25975 0.97605 1.07935 1.04684 1.84037 1.13955 1.45295 1.14777 1.28445 0.94643 1.01978 1.04972 1.65917 1.11625 1.23538 1.16187 1.20357 0.97352 0.95751 0.90097 1.19164 0.87726 0.97138 0.95464 1.22204 1.02625 0.99952 0.96192 1.21684 0.98769 0.99343 0.98376 1.22120 0.99617 0.95058 1.04137 1.22969 0.99109 0.95639 0.84171 1.22827 0.94404 0.90267 0.95254 1.45255 1.03286 1.26846 1.54722 1.18450 0.92039 0.95879 1.22376 0.91283 1.24482 0.96404 0.97593 1.01284 1.69794 1.11703 1.26972 1.48842 0.86317 0.78693 0.81233 0.80879 1.22381 1.20951 1.22155 1.22215 0.90103 0.86444 0.97990 0.92502 0.92162 0.92012 0.90730 0.90823 0.78611 0.92945 0.92019 0.90521 0.92497 0.92919 0.92528 0.89143 0.92613 0.92941 0.89570 0.94532 0.94644 0.94475 0.94946 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.11 1.30 4.64 -4.04 -0.02 1.28 16 3 N -0.59 -9.72 1.93 -167.26 -0.32 -10.04 16 4 C 0.55 10.61 4.36 -12.85 -0.06 10.56 16 5 O -0.38 -9.28 8.71 5.20 0.05 -9.23 16 6 C -0.24 -4.02 4.23 -37.10 -0.16 -4.18 16 7 S 0.17 2.30 22.16 -107.50 -2.38 -0.08 16 8 C 0.00 -0.06 12.22 51.75 0.63 0.57 16 9 N -0.46 -6.82 9.53 -11.53 -0.11 -6.93 16 10 C 0.10 1.59 5.15 -83.89 -0.43 1.16 16 11 C 0.01 0.12 0.75 -155.66 -0.12 0.00 16 12 C -0.15 -2.04 7.13 37.16 0.26 -1.78 16 13 C -0.12 -1.63 7.80 37.16 0.29 -1.34 16 14 C -0.15 -2.67 8.14 37.16 0.30 -2.37 16 15 C 0.09 1.52 4.90 -67.67 -0.33 1.19 16 16 C 0.10 2.01 8.22 -8.50 -0.07 1.94 16 17 N -0.58 -14.50 2.10 -184.60 -0.39 -14.88 16 18 C -0.16 -4.54 8.32 -15.06 -0.13 -4.67 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.08 5.22 -17.43 -0.09 -0.17 16 21 N -0.92 -28.36 11.80 55.49 0.65 -27.70 16 22 Si 0.90 23.70 29.56 -169.99 -5.02 18.67 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 26 C 0.16 3.70 6.18 -8.37 -0.05 3.64 16 27 H 0.06 0.70 7.05 -51.92 -0.37 0.33 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.94 4.87 -51.93 -0.25 0.69 16 31 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.20 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.05 0.62 7.89 -51.93 -0.41 0.21 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.13 3.82 -51.93 -0.20 0.93 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.71 8.11 -51.92 -0.42 0.29 16 39 H 0.09 1.90 4.99 -51.93 -0.26 1.64 16 40 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 42 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.67 6.92 -51.93 -0.36 1.31 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -33.70 370.06 -8.83 -42.53 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.30 Total: -2.23 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.42 Total: 4.32 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.17 Total: -59.56 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.05 Total: -9.23 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.67 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.38 Total: -0.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.70 -8.83 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952425504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.950 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds