Wall clock time and date at job start Tue Mar 31 2020 20:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38084 * 119.92537 * 179.74921 * 5 4 2 7 7 C 1.38311 * 120.07133 * 0.52814 * 6 5 4 8 8 C 1.38266 * 120.14967 * 359.74758 * 7 6 5 9 9 C 1.50699 * 119.96374 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47041 * 269.98328 * 9 8 7 11 11 C 1.46898 * 110.99877 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47289 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99660 * 180.02562 * 13 12 11 15 15 O 1.21277 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99809 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46966 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99759 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47131 * 59.99639 * 22 20 18 24 24 H 1.48499 * 109.46756 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47012 * 299.99655 * 22 20 18 26 26 C 1.38130 * 120.07589 * 359.97438 * 8 7 6 27 27 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 28 28 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 29 29 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 30 30 H 1.09001 * 109.46777 * 239.72421 * 3 2 1 31 31 H 1.08996 * 109.47313 * 359.72040 * 3 2 1 32 32 H 1.08998 * 109.47521 * 119.72476 * 3 2 1 33 33 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 34 34 H 1.07994 * 119.96784 * 180.25745 * 6 5 4 35 35 H 1.08002 * 119.92832 * 179.76921 * 7 6 5 36 36 H 1.09001 * 109.46931 * 29.97680 * 9 8 7 37 37 H 1.08994 * 109.47413 * 149.97867 * 9 8 7 38 38 H 1.00889 * 111.00287 * 56.04553 * 10 9 8 39 39 H 1.09002 * 109.47186 * 299.99510 * 11 10 9 40 40 H 1.09000 * 109.47720 * 59.99452 * 11 10 9 41 41 H 1.09002 * 109.46983 * 300.00096 * 12 11 10 42 42 H 1.09005 * 109.46795 * 59.99824 * 12 11 10 43 43 H 0.96997 * 120.00045 * 0.02562 * 13 12 11 44 44 H 1.08994 * 109.46699 * 299.99936 * 16 14 13 45 45 H 1.08998 * 109.46858 * 59.99898 * 16 14 13 46 46 H 0.97005 * 119.99669 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.03672 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2400 -2.4091 0.0111 7 6 3.5468 -3.6059 0.0170 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 7 1.1688 -5.3447 -1.3603 11 6 0.4365 -6.6177 -1.3938 12 6 0.2006 -7.0322 -2.8476 13 7 -0.5292 -8.3021 -2.8810 14 6 -0.8497 -8.8642 -4.0633 15 8 -0.5343 -8.3185 -5.0994 16 6 -1.6010 -10.1702 -4.0977 17 16 -1.8798 -10.6607 -5.8175 18 6 -2.7506 -12.1719 -5.5673 19 1 -2.9523 -12.5193 -4.5647 20 6 -3.1764 -12.9164 -6.6586 21 7 -2.9302 -12.4932 -7.8805 22 14 -4.0990 -14.5189 -6.3933 23 1 -5.3460 -14.2521 -5.6324 24 1 -4.4407 -15.1168 -7.7090 25 1 -3.2440 -15.4613 -5.6278 26 6 1.4704 -2.4133 0.0118 27 1 -0.3633 0.0051 1.0277 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5095 30 1 2.8279 1.3243 -0.8875 31 1 1.4893 2.0972 -0.0050 32 1 2.8205 1.3287 0.8924 33 1 4.0945 -0.2773 -0.0086 34 1 5.3199 -2.4112 0.0108 35 1 4.0868 -4.5413 0.0219 36 1 2.0039 -5.6706 0.5397 37 1 0.4607 -4.7836 0.5364 38 1 2.0331 -5.4107 -1.8765 39 1 1.0200 -7.3860 -0.8867 40 1 -0.5228 -6.4985 -0.8902 41 1 -0.3831 -6.2638 -3.3544 42 1 1.1598 -7.1514 -3.3515 43 1 -0.7817 -8.7383 -2.0522 44 1 -1.0174 -10.9384 -3.5904 45 1 -2.5603 -10.0508 -3.5941 46 1 -3.2275 -13.0137 -8.6431 47 1 0.3905 -2.4154 0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:09 Heat of formation + Delta-G solvation = -2.750509 kcal Electronic energy + Delta-G solvation = -24597.215214 eV Core-core repulsion = 20906.083601 eV Total energy + Delta-G solvation = -3691.131613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03945 -39.15792 -37.38607 -36.18243 -34.27338 -32.41313 -31.93299 -30.52598 -29.83719 -28.78026 -27.51734 -25.48284 -25.18687 -24.66359 -22.31923 -21.96648 -20.59000 -20.31110 -17.88185 -17.59478 -16.61545 -16.26650 -16.05433 -15.86384 -15.83816 -15.46846 -15.13190 -14.79598 -14.72915 -14.44813 -14.26074 -14.01914 -13.78001 -13.33850 -13.10923 -13.06445 -12.80964 -12.69135 -12.55684 -12.51926 -12.19787 -12.11799 -11.82656 -11.57645 -11.40965 -11.05098 -11.02915 -11.02554 -10.75577 -10.15269 -9.81038 -9.40487 -9.09714 -9.04858 -8.86251 -8.76405 -8.22027 -7.62724 -6.48244 -6.19889 -3.90530 1.12053 1.33816 2.74325 3.00066 3.13073 3.24638 3.27567 3.30573 3.50573 3.72480 4.22074 4.23783 4.41598 4.54366 4.60937 4.69630 4.80571 4.83536 4.90190 4.94251 5.00301 5.14232 5.15089 5.15528 5.20479 5.22018 5.24067 5.27205 5.27708 5.40543 5.56901 5.63873 5.68948 5.80323 5.91959 5.94947 5.99339 6.15604 6.24405 6.39862 6.50931 6.58959 6.68112 6.87352 7.01623 7.15019 7.60648 7.72432 8.36501 8.64127 9.25154 10.87468 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.001396 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.551663 B =20050.902820 C =20356.634703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.640 5.640 3 C 0.097 3.903 4 C 0.211 3.789 5 C -0.195 4.195 6 C -0.074 4.074 7 C -0.171 4.171 8 C -0.038 4.038 9 C 0.100 3.900 10 N -0.680 5.680 11 C 0.049 3.951 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.172 4.172 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.347 0.653 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.526 24.772 22.422 35.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.352 5.352 3 C -0.046 4.046 4 C 0.109 3.891 5 C -0.218 4.218 6 C -0.092 4.092 7 C -0.192 4.192 8 C -0.039 4.039 9 C -0.029 4.029 10 N -0.312 5.312 11 C -0.080 4.080 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.194 4.194 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.165 0.835 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.355 26.217 20.402 35.108 hybrid contribution -0.360 -2.375 2.049 3.158 sum 10.996 23.842 22.451 34.546 Atomic orbital electron populations 1.21682 0.79411 1.02927 1.01086 1.46314 1.05028 1.03132 1.80763 1.21577 0.97017 0.84924 1.01095 1.17805 0.91191 0.85627 0.94429 1.20631 0.92065 0.98593 1.10470 1.20833 0.99371 0.91868 0.97159 1.20807 0.93485 0.97949 1.06918 1.19449 0.93228 0.93938 0.97274 1.20874 0.99330 0.92910 0.89772 1.60335 1.27346 1.30360 1.13150 1.22110 0.99299 0.90036 0.96566 1.21134 0.97336 0.86055 0.95652 1.45899 1.60389 1.24310 1.08828 1.20296 0.78812 0.86137 0.82976 1.90708 1.52573 1.63297 1.32438 1.23530 1.02076 0.96289 1.08477 1.85410 1.73741 1.27377 0.96805 1.22835 1.42173 1.08018 0.95470 0.90980 1.24987 0.95786 0.98333 0.94425 1.70012 1.44018 1.38401 0.97849 0.86227 0.79809 0.81865 0.77607 1.19949 1.20806 1.19953 1.20526 0.99629 0.90333 1.08953 0.93499 0.91568 0.91005 0.92830 0.90943 0.92941 0.86389 0.86233 0.86664 0.94092 0.90120 0.83495 0.94487 0.90257 0.90672 0.91799 0.76920 0.89241 0.89194 0.92133 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.16 59.85 0.61 1.12 16 2 N -0.64 -4.64 3.41 -187.55 -0.64 -5.28 16 3 C 0.10 0.48 9.40 59.85 0.56 1.04 16 4 C 0.21 1.85 6.55 -83.79 -0.55 1.30 16 5 C -0.19 -1.60 9.31 -39.38 -0.37 -1.97 16 6 C -0.07 -0.58 10.04 -39.61 -0.40 -0.98 16 7 C -0.17 -1.40 9.70 -39.54 -0.38 -1.78 16 8 C -0.04 -0.32 5.39 -104.65 -0.56 -0.89 16 9 C 0.10 0.76 5.81 -4.97 -0.03 0.73 16 10 N -0.68 -5.89 6.49 -115.06 -0.75 -6.64 16 11 C 0.05 0.42 5.80 -3.83 -0.02 0.40 16 12 C 0.12 1.47 5.93 -4.04 -0.02 1.44 16 13 N -0.74 -9.91 5.56 -60.29 -0.33 -10.24 16 14 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 15 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.17 -1.53 8.86 -39.38 -0.35 -1.88 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 29 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 30 H 0.05 0.26 7.93 -51.93 -0.41 -0.15 16 31 H 0.07 0.24 7.80 -51.93 -0.40 -0.17 16 32 H 0.05 0.24 7.97 -51.93 -0.41 -0.18 16 33 H 0.12 0.79 6.74 -52.49 -0.35 0.43 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 37 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.35 2.96 8.72 -39.30 -0.34 2.61 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 47 H 0.12 1.02 6.14 -52.49 -0.32 0.70 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -35.66 405.21 -10.73 -46.38 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.52 Total: 1.99 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.18 Total: -7.41 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.99 Total: -47.73 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.66 -10.73 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.634 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds