Wall clock time and date at job start Tue Mar 31 2020 20:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35963 * 116.99902 * 2 1 4 4 C 1.38636 * 120.44526 * 0.02562 * 3 2 1 5 5 N 1.31887 * 120.71943 * 179.97438 * 4 3 2 6 6 C 1.32023 * 121.74602 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.59018 * 179.97438 * 6 5 4 8 8 C 1.38513 * 120.81878 * 0.02562 * 6 5 4 9 9 C 1.50697 * 120.39757 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47266 * 279.99901 * 9 8 6 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.47077 * 120.87966 * 359.72418 * 12 10 9 14 14 C 1.53696 * 108.27500 * 128.75430 * 13 12 10 15 15 N 1.46901 * 109.25943 * 54.08018 * 14 13 12 16 16 C 1.46897 * 111.00064 * 172.60622 * 15 14 13 17 17 C 1.50703 * 109.47464 * 294.30071 * 16 15 14 18 18 H 1.08004 * 119.99493 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00347 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46823 * 60.00007 * 21 19 17 23 23 H 1.48491 * 109.47587 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46986 * 300.00242 * 21 19 17 25 25 C 1.46899 * 111.26575 * 296.75840 * 15 14 13 26 26 C 1.47082 * 120.87969 * 180.02562 * 12 10 9 27 27 C 1.38496 * 119.19895 * 0.23415 * 8 6 5 28 28 H 1.09002 * 109.47005 * 299.99761 * 1 2 3 29 29 H 1.09005 * 109.47342 * 59.99631 * 1 2 3 30 30 H 1.08997 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.63766 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.47205 * 159.99994 * 9 8 6 33 33 H 1.08997 * 109.47395 * 40.00486 * 9 8 6 34 34 H 1.09000 * 109.62570 * 248.52235 * 13 12 10 35 35 H 1.09001 * 109.63406 * 9.10037 * 13 12 10 36 36 H 1.09003 * 109.65081 * 294.07349 * 14 13 12 37 37 H 1.09003 * 109.44330 * 173.95722 * 14 13 12 38 38 H 1.08995 * 109.47312 * 54.30663 * 16 15 14 39 39 H 1.09005 * 109.46942 * 174.30699 * 16 15 14 40 40 H 0.96997 * 120.00305 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.49144 * 303.13633 * 25 15 14 42 42 H 1.09006 * 109.48871 * 183.06074 * 25 15 14 43 43 H 1.09002 * 109.62469 * 350.89608 * 26 12 10 44 44 H 1.08992 * 109.62526 * 111.47804 * 26 12 10 45 45 H 1.07998 * 120.79640 * 179.75049 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.3002 2.3800 0.0005 5 7 1.8933 3.5580 0.0010 6 6 3.2085 3.6735 0.0016 7 9 3.7702 4.9022 0.0016 8 6 4.0195 2.5506 0.0011 9 6 5.5197 2.6936 0.0011 10 6 5.9964 2.9874 -1.3980 11 8 5.1966 3.0728 -2.3057 12 7 7.3115 3.1552 -1.6406 13 6 8.2976 3.0618 -0.5533 14 6 9.4000 2.0819 -0.9854 15 7 9.9444 2.5062 -2.2822 16 6 11.1171 1.7014 -2.6495 17 6 12.2363 1.9712 -1.6770 18 1 12.0907 2.6703 -0.8668 19 6 13.4459 1.3256 -1.8216 20 7 13.6233 0.4747 -2.8086 21 14 14.8329 1.6595 -0.6157 22 1 14.3943 1.2967 0.7559 23 1 16.0184 0.8461 -0.9871 24 1 15.1882 3.1008 -0.6568 25 6 8.9195 2.4536 -3.3332 26 6 7.7980 3.4432 -2.9984 27 6 3.4351 1.2951 -0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2215 2.3250 0.0014 32 1 5.9730 1.7665 0.3522 33 1 5.8068 3.5114 0.6620 34 1 8.7300 4.0446 -0.3657 35 1 7.8123 2.6936 0.3506 36 1 8.9836 1.0786 -1.0764 37 1 10.1956 2.0792 -0.2403 38 1 10.8560 0.6436 -2.6187 39 1 11.4390 1.9670 -3.6565 40 1 14.4742 0.0202 -2.9101 41 1 8.5099 1.4452 -3.3916 42 1 9.3665 2.7210 -4.2908 43 1 6.9821 3.3273 -3.7119 44 1 8.1833 4.4619 -3.0408 45 1 4.0428 0.4023 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178424607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:20 Heat of formation + Delta-G solvation = -60.902740 kcal Electronic energy + Delta-G solvation = -28954.980165 eV Core-core repulsion = 24695.113706 eV Total energy + Delta-G solvation = -4259.866459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.10347 -41.08757 -40.00777 -38.46065 -37.53064 -34.45817 -34.17524 -32.47881 -31.39132 -30.72465 -28.83704 -28.10356 -27.50428 -25.44150 -24.06658 -23.40483 -22.81108 -21.89309 -20.59957 -18.86133 -18.40699 -18.13937 -17.87388 -17.27976 -16.44661 -16.42008 -15.92261 -15.68945 -15.46010 -15.07747 -14.86007 -14.66470 -14.46007 -14.00697 -13.82670 -13.70964 -13.58014 -13.49694 -13.30472 -13.19893 -12.96269 -12.42169 -12.26057 -12.15710 -11.89274 -11.83166 -11.32771 -11.10905 -11.01222 -10.80444 -10.65577 -10.58325 -10.20050 -10.00531 -9.92988 -9.63046 -9.33019 -8.67860 -8.55271 -8.47126 -7.37440 -6.09264 -4.11727 0.52640 0.77627 2.61137 2.65003 2.97800 3.26190 3.28595 3.33720 3.35716 3.37728 4.04641 4.11341 4.33372 4.35804 4.49671 4.56735 4.66802 4.67740 4.74706 4.82589 5.02097 5.14625 5.23545 5.26341 5.29906 5.35115 5.45979 5.48122 5.58189 5.60674 5.72939 5.82428 5.99770 6.07903 6.24660 6.40021 6.41467 6.62245 6.70882 7.17926 7.23558 7.26251 7.46974 7.70232 7.97581 8.08023 8.17227 8.43253 8.95102 9.52950 11.01439 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002244 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.874336 B =12472.127535 C =12816.425868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.069 3.931 4 C 0.051 3.949 5 N -0.478 5.478 6 C 0.290 3.710 7 F -0.109 7.109 8 C -0.093 4.093 9 C -0.101 4.101 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.605 5.605 13 C 0.106 3.894 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.041 3.959 26 C 0.119 3.881 27 C -0.070 4.070 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.098 0.902 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.157 0.699 8.186 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.219 6.219 3 C 0.021 3.979 4 C -0.107 4.107 5 N -0.192 5.192 6 C 0.136 3.864 7 F -0.088 7.088 8 C -0.097 4.097 9 C -0.141 4.141 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.088 4.088 26 C -0.004 4.004 27 C -0.096 4.096 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.185 0.815 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.116 0.884 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.676 1.693 7.652 25.891 hybrid contribution 1.024 -1.129 0.462 1.593 sum -23.652 0.564 8.114 25.011 Atomic orbital electron populations 1.23177 0.77727 1.04687 1.01710 1.86121 1.21823 1.25378 1.88556 1.19911 0.92902 0.85949 0.99114 1.22585 1.00384 0.85556 1.02187 1.66843 1.10307 1.28607 1.13414 1.17712 0.87523 0.80380 1.00813 1.91619 1.83377 1.40393 1.93392 1.19883 0.95982 0.91906 1.01927 1.20642 0.90634 1.06003 0.96865 1.20217 0.82156 0.76983 0.90139 1.90702 1.53611 1.51600 1.46248 1.48201 1.05573 1.69735 1.10342 1.22172 0.89474 1.01434 0.88576 1.22420 0.96301 0.94589 0.94640 1.62074 1.06501 1.56891 1.00636 1.19723 0.85950 0.90093 0.97313 1.21089 0.96655 1.24598 1.12604 0.91834 1.24998 0.98686 0.95112 0.95788 1.69945 1.25101 1.27837 1.30773 0.86545 0.81272 0.78341 0.81148 1.20258 1.21376 1.20118 1.22414 0.92665 0.96970 0.96760 1.21780 0.96535 0.99409 0.82645 1.20683 0.91832 0.97661 0.99428 0.92230 0.92184 0.87635 0.81481 0.86688 0.86805 0.90252 0.90138 0.95626 0.88366 0.99105 0.95012 0.92781 0.95532 0.90017 0.89407 0.90799 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.59 10.51 -19.63 -0.21 -2.80 16 3 C 0.07 0.67 6.71 -39.10 -0.26 0.41 16 4 C 0.05 0.50 10.22 -17.38 -0.18 0.32 16 5 N -0.48 -6.11 10.37 -13.48 -0.14 -6.25 16 6 C 0.29 3.85 8.25 -17.37 -0.14 3.71 16 7 F -0.11 -1.53 16.69 2.25 0.04 -1.49 16 8 C -0.09 -1.07 4.44 -104.43 -0.46 -1.54 16 9 C -0.10 -1.05 3.94 -29.04 -0.11 -1.17 16 10 C 0.52 7.43 7.70 -10.98 -0.08 7.34 16 11 O -0.54 -9.69 15.41 5.56 0.09 -9.60 16 12 N -0.61 -8.73 3.00 -172.16 -0.52 -9.25 16 13 C 0.11 1.39 6.53 -3.37 -0.02 1.37 16 14 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 15 N -0.54 -10.78 4.62 -235.44 -1.09 -11.86 16 16 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 17 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16 18 H 0.06 1.65 7.13 -52.48 -0.37 1.27 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.04 0.72 5.62 -3.68 -0.02 0.70 16 26 C 0.12 1.82 6.60 -3.58 -0.02 1.80 16 27 C -0.07 -0.72 9.77 -39.15 -0.38 -1.10 16 28 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 29 H 0.06 0.21 7.68 -51.93 -0.40 -0.18 16 30 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.17 1.06 6.31 -52.48 -0.33 0.73 16 32 H 0.11 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.11 0.99 7.80 -51.93 -0.41 0.58 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.77 6.02 -51.93 -0.31 0.46 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 43 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -33.83 373.47 -7.86 -41.69 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.25 Total: -2.76 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.13 Total: 6.09 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -1.01 Total: -52.59 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.12 Total: -12.40 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.83 -7.86 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178424607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.208 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds