Wall clock time and date at job start Tue Mar 31 2020 20:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35963 * 116.99902 * 2 1 4 4 C 1.38636 * 120.44526 * 0.02562 * 3 2 1 5 5 N 1.31887 * 120.71943 * 179.97438 * 4 3 2 6 6 C 1.32023 * 121.74602 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.59018 * 179.97438 * 6 5 4 8 8 C 1.38513 * 120.81878 * 0.02562 * 6 5 4 9 9 C 1.50697 * 120.39757 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47266 * 279.99901 * 9 8 6 11 11 O 1.21279 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.47077 * 120.87966 * 359.72418 * 12 10 9 14 14 C 1.53696 * 108.27500 * 128.75430 * 13 12 10 15 15 N 1.46901 * 109.25943 * 54.08018 * 14 13 12 16 16 C 1.46897 * 111.00064 * 172.60622 * 15 14 13 17 17 C 1.50703 * 109.47464 * 294.30071 * 16 15 14 18 18 H 1.08004 * 119.99493 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00347 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46823 * 60.00007 * 21 19 17 23 23 H 1.48491 * 109.47587 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46986 * 300.00242 * 21 19 17 25 25 C 1.46899 * 111.26575 * 296.75840 * 15 14 13 26 26 C 1.47082 * 120.87969 * 180.02562 * 12 10 9 27 27 C 1.38496 * 119.19895 * 0.23415 * 8 6 5 28 28 H 1.09002 * 109.47005 * 299.99761 * 1 2 3 29 29 H 1.09005 * 109.47342 * 59.99631 * 1 2 3 30 30 H 1.08997 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.63766 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.47205 * 159.99994 * 9 8 6 33 33 H 1.08997 * 109.47395 * 40.00486 * 9 8 6 34 34 H 1.09000 * 109.62570 * 248.52235 * 13 12 10 35 35 H 1.09001 * 109.63406 * 9.10037 * 13 12 10 36 36 H 1.09003 * 109.65081 * 294.07349 * 14 13 12 37 37 H 1.09003 * 109.44330 * 173.95722 * 14 13 12 38 38 H 1.08995 * 109.47312 * 54.30663 * 16 15 14 39 39 H 1.09005 * 109.46942 * 174.30699 * 16 15 14 40 40 H 0.96997 * 120.00305 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.49144 * 303.13633 * 25 15 14 42 42 H 1.09006 * 109.48871 * 183.06074 * 25 15 14 43 43 H 1.09002 * 109.62469 * 350.89608 * 26 12 10 44 44 H 1.08992 * 109.62526 * 111.47804 * 26 12 10 45 45 H 1.07998 * 120.79640 * 179.75049 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.3002 2.3800 0.0005 5 7 1.8933 3.5580 0.0010 6 6 3.2085 3.6735 0.0016 7 9 3.7702 4.9022 0.0016 8 6 4.0195 2.5506 0.0011 9 6 5.5197 2.6936 0.0011 10 6 5.9964 2.9874 -1.3980 11 8 5.1966 3.0728 -2.3057 12 7 7.3115 3.1552 -1.6406 13 6 8.2976 3.0618 -0.5533 14 6 9.4000 2.0819 -0.9854 15 7 9.9444 2.5062 -2.2822 16 6 11.1171 1.7014 -2.6495 17 6 12.2363 1.9712 -1.6770 18 1 12.0907 2.6703 -0.8668 19 6 13.4459 1.3256 -1.8216 20 7 13.6233 0.4747 -2.8086 21 14 14.8329 1.6595 -0.6157 22 1 14.3943 1.2967 0.7559 23 1 16.0184 0.8461 -0.9871 24 1 15.1882 3.1008 -0.6568 25 6 8.9195 2.4536 -3.3332 26 6 7.7980 3.4432 -2.9984 27 6 3.4351 1.2951 -0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2215 2.3250 0.0014 32 1 5.9730 1.7665 0.3522 33 1 5.8068 3.5114 0.6620 34 1 8.7300 4.0446 -0.3657 35 1 7.8123 2.6936 0.3506 36 1 8.9836 1.0786 -1.0764 37 1 10.1956 2.0792 -0.2403 38 1 10.8560 0.6436 -2.6187 39 1 11.4390 1.9670 -3.6565 40 1 14.4742 0.0202 -2.9101 41 1 8.5099 1.4452 -3.3916 42 1 9.3665 2.7210 -4.2908 43 1 6.9821 3.3273 -3.7119 44 1 8.1833 4.4619 -3.0408 45 1 4.0428 0.4023 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178424607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:19 Heat of formation + Delta-G solvation = -85.114952 kcal Electronic energy + Delta-G solvation = -28956.030085 eV Core-core repulsion = 24695.113706 eV Total energy + Delta-G solvation = -4260.916379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04888 -41.87204 -41.11730 -39.26665 -38.81249 -35.97580 -35.05247 -34.37381 -32.42819 -31.73061 -30.16801 -29.17281 -28.21282 -27.01720 -24.90789 -24.65167 -24.07508 -23.27043 -21.93531 -19.99723 -19.20857 -18.91983 -18.64698 -18.47021 -18.37650 -17.28610 -16.84843 -16.68409 -16.55179 -16.51068 -15.99247 -15.76418 -15.66500 -15.33477 -15.29207 -14.75186 -14.59616 -14.44448 -14.26383 -14.11018 -14.01117 -13.89735 -13.53835 -13.01695 -12.97093 -12.79524 -12.75705 -12.55406 -12.38337 -12.37216 -12.29163 -12.11439 -11.75600 -11.28862 -11.17091 -10.80026 -10.61642 -10.59245 -9.78148 -9.43135 -9.04144 -8.18396 -6.28852 -0.25740 -0.02247 1.45251 1.48169 1.53621 1.55788 1.88204 2.11854 2.40742 2.42935 2.57856 3.14143 3.24102 3.29109 3.40795 3.52039 3.57921 3.94631 3.97498 4.03050 4.07425 4.24815 4.28592 4.35818 4.40769 4.45981 4.46471 4.54027 4.58896 4.73880 4.75488 4.78734 4.81564 4.86700 4.96754 5.04400 5.21592 5.23831 5.29374 5.44237 5.65532 6.03984 6.10439 6.24089 6.41282 6.47001 6.57428 6.87196 7.06226 7.41275 8.92664 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002244 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.874336 B =12472.127535 C =12816.425868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.317 6.317 3 C 0.074 3.926 4 C 0.050 3.950 5 N -0.503 5.503 6 C 0.260 3.740 7 F -0.123 7.123 8 C -0.097 4.097 9 C -0.096 4.096 10 C 0.516 3.484 11 O -0.583 6.583 12 N -0.609 5.609 13 C 0.116 3.884 14 C 0.047 3.953 15 N -0.541 5.541 16 C 0.209 3.791 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.289 1.289 24 H -0.269 1.269 25 C 0.045 3.955 26 C 0.127 3.873 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.198 0.802 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.020 0.980 37 H 0.088 0.912 38 H -0.040 1.040 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.016 0.984 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.236 0.653 10.555 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.229 6.229 3 C 0.026 3.974 4 C -0.108 4.108 5 N -0.217 5.217 6 C 0.106 3.894 7 F -0.102 7.102 8 C -0.101 4.101 9 C -0.136 4.136 10 C 0.306 3.694 11 O -0.463 6.463 12 N -0.341 5.341 13 C -0.006 4.006 14 C -0.081 4.081 15 N -0.265 5.265 16 C 0.082 3.918 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.215 1.215 24 H -0.194 1.194 25 C -0.084 4.084 26 C 0.004 3.996 27 C -0.104 4.104 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.215 0.785 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.038 0.962 37 H 0.107 0.893 38 H -0.022 1.022 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -25.778 1.660 10.048 27.717 hybrid contribution 1.198 -1.211 -0.331 1.735 sum -24.581 0.449 9.717 26.435 Atomic orbital electron populations 1.23532 0.75559 1.06456 1.02916 1.86124 1.24089 1.24623 1.88100 1.20000 0.93002 0.86486 0.97922 1.23087 1.01795 0.84834 1.01107 1.66830 1.10510 1.30134 1.14247 1.18001 0.88150 0.80475 1.02777 1.91569 1.83609 1.41262 1.93744 1.19960 0.96403 0.91755 1.01998 1.20737 0.90125 1.08373 0.94336 1.20884 0.81447 0.75674 0.91402 1.90687 1.54481 1.53184 1.47948 1.48284 1.06145 1.69647 1.10062 1.22224 0.88136 1.00803 0.89401 1.22497 0.97306 0.95687 0.92646 1.62002 1.06286 1.55671 1.02584 1.19364 0.87891 0.88843 0.95658 1.21428 0.97188 1.24392 1.12832 0.91063 1.25946 1.01519 0.94793 0.97581 1.70092 1.25814 1.29071 1.32776 0.85411 0.77630 0.78297 0.79135 1.18722 1.21470 1.19368 1.22411 0.92667 0.97187 0.96128 1.21583 0.95393 0.98810 0.83765 1.20980 0.92538 0.97848 0.99019 0.90616 0.91347 0.85731 0.78509 0.83496 0.84612 0.89463 0.85638 0.96209 0.89330 1.02221 0.98001 0.92792 0.96553 0.90384 0.89600 0.90145 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.62 10.51 -93.14 -0.98 -5.59 16 3 C 0.07 1.30 6.71 22.58 0.15 1.46 16 4 C 0.05 0.89 10.22 84.78 0.87 1.76 16 5 N -0.50 -12.51 10.37 -196.57 -2.04 -14.55 16 6 C 0.26 6.72 8.25 84.73 0.70 7.42 16 7 F -0.12 -3.44 16.69 44.97 0.75 -2.68 16 8 C -0.10 -2.08 4.44 -19.74 -0.09 -2.17 16 9 C -0.10 -1.72 3.94 29.10 0.11 -1.61 16 10 C 0.52 13.93 7.70 87.66 0.67 14.60 16 11 O -0.58 -20.44 15.41 -3.03 -0.05 -20.49 16 12 N -0.61 -16.49 3.00 -816.98 -2.45 -18.95 16 13 C 0.12 2.72 6.53 86.50 0.57 3.28 16 14 C 0.05 1.58 5.47 86.54 0.47 2.05 16 15 N -0.54 -21.93 4.62 -898.79 -4.15 -26.08 16 16 C 0.21 10.74 4.72 85.56 0.40 11.15 16 17 C -0.52 -27.96 8.41 25.60 0.22 -27.75 16 18 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 20 N -0.94 -55.39 13.29 21.44 0.28 -55.10 16 21 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.05 1.61 5.62 86.40 0.49 2.10 16 26 C 0.13 3.85 6.60 86.36 0.57 4.42 16 27 C -0.08 -1.44 9.77 22.55 0.22 -1.22 16 28 H 0.08 0.22 7.68 -2.39 -0.02 0.20 16 29 H 0.07 0.31 7.68 -2.38 -0.02 0.29 16 30 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.20 2.03 6.31 -2.91 -0.02 2.02 16 32 H 0.15 1.68 7.56 -2.38 -0.02 1.66 16 33 H 0.14 1.87 7.80 -2.39 -0.02 1.85 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.13 1.84 6.02 -2.39 -0.01 1.82 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 3.12 6.67 -2.39 -0.02 3.11 16 38 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 39 H 0.00 0.11 7.97 -2.38 -0.02 0.09 16 40 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 2.78 7.99 -2.38 -0.02 2.76 16 43 H 0.09 2.66 7.06 -2.39 -0.02 2.64 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -75.94 373.47 1.33 -74.61 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.01 Total: 7.23 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.93 Total: 17.08 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -8.36 Total: -114.68 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.03 Total: -26.08 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.75 Total: -2.68 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.94 1.33 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178424607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.508 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds