Wall clock time and date at job start Tue Mar 31 2020 20:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99983 * 2 1 4 4 O 1.20823 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99774 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47010 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00115 * 269.99616 * 6 5 3 8 8 H 1.08006 * 120.00087 * 138.87585 * 7 6 5 9 9 C 1.38951 * 119.99883 * 318.88680 * 7 6 5 10 10 N 1.31411 * 119.99808 * 339.30794 * 9 7 6 11 11 Si 1.86801 * 120.00090 * 159.31847 * 9 7 6 12 12 H 1.48493 * 109.47500 * 89.99116 * 11 9 7 13 13 H 1.48499 * 109.46862 * 209.99611 * 11 9 7 14 14 H 1.48497 * 109.46707 * 329.99000 * 11 9 7 15 15 C 1.34776 * 120.00365 * 90.00022 * 6 5 3 16 16 O 1.21297 * 119.99864 * 5.57497 * 15 6 5 17 17 C 1.50700 * 120.00579 * 185.57755 * 15 6 5 18 18 H 1.09008 * 109.46692 * 35.60528 * 17 15 6 19 19 C 1.52996 * 109.47180 * 275.60650 * 17 15 6 20 20 C 1.53002 * 109.47241 * 155.60192 * 17 15 6 21 21 C 1.50699 * 109.46941 * 185.00148 * 20 17 15 22 22 C 1.39879 * 126.03756 * 90.02684 * 21 20 17 23 23 C 1.50697 * 125.89776 * 359.95512 * 22 21 20 24 24 N 1.30837 * 108.19971 * 179.97438 * 22 21 20 25 25 N 1.40090 * 108.20861 * 359.97438 * 24 22 21 26 26 C 1.46496 * 126.03798 * 179.97438 * 25 24 22 27 27 C 1.34953 * 107.92105 * 359.76133 * 25 24 22 28 28 C 1.50697 * 126.12324 * 180.23630 * 27 25 24 29 29 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46799 * 300.00103 * 1 2 3 31 31 H 1.09005 * 109.46941 * 59.99862 * 1 2 3 32 32 H 1.08998 * 109.47413 * 59.99981 * 5 3 2 33 33 H 1.09003 * 109.46900 * 300.00354 * 5 3 2 34 34 H 0.97003 * 119.99990 * 185.06850 * 10 9 7 35 35 H 1.08993 * 109.47581 * 295.21658 * 19 17 15 36 36 H 1.09006 * 109.47155 * 55.22317 * 19 17 15 37 37 H 1.09000 * 109.47094 * 175.21232 * 19 17 15 38 38 H 1.08993 * 109.47406 * 305.00311 * 20 17 15 39 39 H 1.08995 * 109.46592 * 65.00747 * 20 17 15 40 40 H 1.09008 * 109.46882 * 90.00202 * 23 22 21 41 41 H 1.09002 * 109.47017 * 209.99382 * 23 22 21 42 42 H 1.08997 * 109.47471 * 330.00210 * 23 22 21 43 43 H 1.09007 * 109.46934 * 90.03012 * 26 25 24 44 44 H 1.08993 * 109.46988 * 210.02725 * 26 25 24 45 45 H 1.08998 * 109.47382 * 330.03155 * 26 25 24 46 46 H 1.08998 * 109.47363 * 270.17729 * 28 27 25 47 47 H 1.09007 * 109.47355 * 30.18012 * 28 27 25 48 48 H 1.08998 * 109.47211 * 150.17609 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1757 3.3378 -1.1868 8 1 3.8353 4.3564 -1.3014 9 6 4.8100 2.6943 -2.2424 10 7 5.5721 1.6488 -2.0120 11 14 4.5796 3.3155 -3.9890 12 1 5.6268 4.3217 -4.2987 13 1 4.6899 2.1781 -4.9374 14 1 3.2388 3.9403 -4.1192 15 6 4.1733 3.3252 1.1676 16 8 4.1009 2.7182 2.2153 17 6 4.4775 4.8012 1.1716 18 1 3.9257 5.2880 0.3674 19 6 5.9781 5.0132 0.9617 20 6 4.0601 5.4043 2.5143 21 6 4.2498 6.8988 2.4744 22 6 3.2965 7.8388 2.0689 23 6 1.8994 7.5322 1.5945 24 7 3.8276 9.0301 2.1723 25 7 5.1373 8.8857 2.6481 26 6 6.0851 9.9724 2.9065 27 6 5.3700 7.5690 2.8308 28 6 6.6496 6.9548 3.3370 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7804 0.8891 34 1 6.0730 1.2444 -2.7376 35 1 6.5255 4.6004 1.8089 36 1 6.2916 4.5105 0.0467 37 1 6.1863 6.0800 0.8795 38 1 3.0114 5.1762 2.7049 39 1 4.6742 4.9813 3.3092 40 1 1.2194 7.5271 2.4464 41 1 1.5827 8.2934 0.8814 42 1 1.8856 6.5546 1.1127 43 1 5.9772 10.3112 3.9370 44 1 7.1018 9.6135 2.7467 45 1 5.8815 10.8011 2.2284 46 1 7.3062 6.7370 2.4946 47 1 7.1448 7.6520 4.0129 48 1 6.4234 6.0311 3.8696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173080121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:14 Heat of formation + Delta-G solvation = -49.419492 kcal Electronic energy + Delta-G solvation = -30798.635812 eV Core-core repulsion = 26662.727610 eV Total energy + Delta-G solvation = -4135.908203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21205 -39.78290 -38.59446 -35.83973 -34.87795 -34.49632 -33.78794 -31.62201 -31.19810 -29.39587 -28.69695 -27.96371 -26.41688 -25.69152 -24.92681 -24.44834 -22.19911 -20.36608 -19.32335 -19.21095 -18.79782 -16.92730 -16.89245 -16.48219 -16.06569 -15.71040 -15.57645 -15.32150 -14.67139 -14.38933 -14.11191 -13.76033 -13.65709 -13.46929 -13.21931 -12.99638 -12.96883 -12.74110 -12.59624 -12.46718 -12.34244 -11.81745 -11.80867 -11.77010 -11.69789 -11.53123 -11.45471 -11.28344 -11.12190 -10.87447 -10.75610 -10.48212 -10.41972 -10.22679 -10.17357 -9.94445 -9.69101 -9.21895 -8.82499 -8.47872 -7.90494 -7.58984 -6.46270 -4.15211 2.04637 2.65863 2.98347 3.07330 3.09645 3.19612 3.25079 3.28132 3.91801 4.15937 4.55866 4.73473 4.80557 4.91733 5.07118 5.09691 5.23076 5.31394 5.45744 5.51001 5.52239 5.57785 5.62353 5.63989 5.79521 5.82195 5.89640 5.93197 5.93637 6.03602 6.13912 6.20092 6.26353 6.37090 6.47848 6.52000 6.64010 6.71251 6.75416 6.91670 7.03464 7.03833 7.07691 7.25728 7.44587 7.80958 7.97396 8.26672 8.59667 9.01648 9.38783 9.82916 10.58523 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003887 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.999474 B = 7201.306552 C = 8091.795717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.444 3.556 4 O -0.504 6.504 5 C 0.124 3.876 6 N -0.427 5.427 7 C -0.331 4.331 8 H 0.091 0.909 9 C 0.046 3.954 10 N -0.864 5.864 11 Si 0.910 3.090 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.498 3.502 16 O -0.600 6.600 17 C -0.080 4.080 18 H 0.087 0.913 19 C -0.130 4.130 20 C -0.022 4.022 21 C -0.216 4.216 22 C 0.083 3.917 23 C -0.075 4.075 24 N -0.306 5.306 25 N -0.382 5.382 26 C 0.106 3.894 27 C 0.084 3.916 28 C -0.093 4.093 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.272 0.728 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 7.183 5.712 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.286 3.714 4 O -0.390 6.390 5 C -0.002 4.002 6 N -0.146 5.146 7 C -0.459 4.459 8 H 0.108 0.892 9 C -0.160 4.160 10 N -0.500 5.500 11 Si 0.736 3.264 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.288 3.712 16 O -0.485 6.485 17 C -0.101 4.101 18 H 0.105 0.895 19 C -0.187 4.187 20 C -0.061 4.061 21 C -0.227 4.227 22 C -0.083 4.083 23 C -0.134 4.134 24 N -0.129 5.129 25 N -0.165 5.165 26 C -0.036 4.036 27 C -0.042 4.042 28 C -0.152 4.152 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.023 8.380 5.966 10.287 hybrid contribution -0.158 -0.395 -1.021 1.106 sum -0.135 7.985 4.946 9.393 Atomic orbital electron populations 1.23082 0.78210 1.02566 1.01951 1.86558 1.22139 1.34981 1.84959 1.25426 0.93668 0.80829 0.71502 1.90567 1.67034 1.36370 1.45050 1.20926 0.84061 0.88485 1.06735 1.42951 1.57681 1.08479 1.05512 1.19337 1.38287 0.99488 0.88785 0.89189 1.25392 0.94123 0.96263 1.00270 1.69836 1.24183 1.22613 1.33399 0.86189 0.79352 0.78598 0.82264 1.20075 1.20644 1.19209 1.20534 0.77832 0.89511 0.83309 1.90517 1.56515 1.69109 1.32323 1.20904 0.98367 0.92880 0.97933 0.89514 1.21672 0.93995 1.00488 1.02560 1.19733 1.01814 0.87488 0.97020 1.19792 0.93541 0.96813 1.12545 1.22215 0.97287 0.90142 0.98651 1.20204 0.89059 1.02959 1.01136 1.77234 0.90999 1.22091 1.22530 1.48187 1.10958 1.04865 1.52509 1.21713 0.90743 0.89043 1.02077 1.20776 0.97739 0.84071 1.01623 1.20569 0.92165 1.01044 1.01379 0.88978 0.92551 0.92508 0.84552 0.88082 0.91734 0.93372 0.90848 0.93267 0.91519 0.91038 0.90825 0.91209 0.89810 0.91353 0.89820 0.89641 0.89851 0.91844 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.13 10.57 -39.26 -0.41 -7.55 16 3 C 0.44 10.03 8.02 36.00 0.29 10.32 16 4 O -0.50 -12.42 16.18 -18.75 -0.30 -12.72 16 5 C 0.12 2.91 5.64 -5.20 -0.03 2.88 16 6 N -0.43 -10.54 1.98 -116.10 -0.23 -10.77 16 7 C -0.33 -8.21 7.83 -14.93 -0.12 -8.33 16 8 H 0.09 2.22 6.58 -52.48 -0.35 1.87 16 9 C 0.05 1.11 4.94 -17.47 -0.09 1.02 16 10 N -0.86 -21.63 11.68 55.50 0.65 -20.98 16 11 Si 0.91 19.30 29.60 -169.99 -5.03 14.26 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 C 0.50 11.90 6.74 -10.99 -0.07 11.82 16 16 O -0.60 -15.38 15.74 5.54 0.09 -15.29 16 17 C -0.08 -1.60 2.02 -91.77 -0.19 -1.78 16 18 H 0.09 1.82 6.60 -51.92 -0.34 1.48 16 19 C -0.13 -2.37 7.59 37.16 0.28 -2.09 16 20 C -0.02 -0.39 4.07 -27.88 -0.11 -0.50 16 21 C -0.22 -3.57 4.81 -105.05 -0.51 -4.08 16 22 C 0.08 1.38 7.22 -82.40 -0.59 0.78 16 23 C -0.07 -1.08 10.12 36.00 0.36 -0.72 16 24 N -0.31 -5.09 12.58 33.67 0.42 -4.67 16 25 N -0.38 -5.43 4.01 -63.89 -0.26 -5.68 16 26 C 0.11 0.97 11.09 59.84 0.66 1.63 16 27 C 0.08 1.22 6.03 -82.26 -0.50 0.72 16 28 C -0.09 -1.04 8.46 36.00 0.30 -0.74 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.14 3.29 5.77 -51.93 -0.30 2.99 16 33 H 0.10 2.34 7.35 -51.93 -0.38 1.96 16 34 H 0.27 6.46 8.32 -40.82 -0.34 6.12 16 35 H 0.05 0.83 7.90 -51.93 -0.41 0.42 16 36 H 0.07 1.51 7.43 -51.93 -0.39 1.13 16 37 H 0.05 0.81 5.85 -51.93 -0.30 0.51 16 38 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 39 H 0.07 1.28 7.03 -51.93 -0.37 0.92 16 40 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 43 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.08 0.58 7.68 -51.93 -0.40 0.18 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.90 6.88 -51.93 -0.36 0.54 16 47 H 0.06 0.54 7.74 -51.93 -0.40 0.14 16 48 H 0.09 1.02 7.14 -51.93 -0.37 0.65 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -32.06 393.88 -5.65 -37.72 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.28 Total: 7.20 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 0.77 Total: 12.55 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.59 Total: -42.10 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.63 Total: -35.56 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.06 -5.65 -37.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173080121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.703 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds