Wall clock time and date at job start Tue Mar 31 2020 19:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48500 * 109.46974 * 266.12174 * 3 2 1 5 5 H 1.48497 * 109.47322 * 26.12417 * 3 2 1 6 6 H 1.48505 * 109.46884 * 146.12291 * 3 2 1 7 7 C 1.40044 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00240 * 350.24240 * 7 2 1 9 9 C 1.46374 * 120.00191 * 169.96750 * 7 2 1 10 10 O 1.21689 * 119.99707 * 351.16549 * 9 7 2 11 11 N 1.34768 * 120.00455 * 171.16471 * 9 7 2 12 12 C 1.46964 * 120.59490 * 4.99983 * 11 9 7 13 13 C 1.53819 * 108.39930 * 124.75492 * 12 11 9 14 14 N 1.46960 * 108.57518 * 49.64273 * 13 12 11 15 15 C 1.34778 * 120.59270 * 124.62944 * 14 13 12 16 16 O 1.21281 * 119.99617 * 180.02562 * 15 14 13 17 17 C 1.50694 * 119.99938 * 0.02562 * 15 14 13 18 18 C 1.53931 * 113.73668 * 276.73159 * 17 15 14 19 19 N 1.47962 * 86.18290 * 221.92279 * 18 17 15 20 20 C 1.46903 * 110.99988 * 137.57942 * 19 18 17 21 21 H 1.08991 * 110.75469 * 322.65913 * 20 19 18 22 22 C 1.55307 * 110.84204 * 86.35658 * 20 19 18 23 23 C 1.54950 * 100.93889 * 152.32384 * 22 20 19 24 24 O 1.43648 * 105.13757 * 323.55218 * 23 22 20 25 25 C 1.43244 * 109.96789 * 24.43019 * 24 23 22 26 26 C 1.47962 * 90.76073 * 24.68951 * 19 18 17 27 27 C 1.46968 * 118.81142 * 304.64129 * 14 13 12 28 28 C 1.46971 * 120.59576 * 185.27900 * 11 9 7 29 29 H 0.97005 * 119.99973 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.61566 * 244.54240 * 12 11 9 31 31 H 1.09006 * 109.60892 * 5.05341 * 12 11 9 32 32 H 1.09004 * 109.74291 * 289.84948 * 13 12 11 33 33 H 1.08995 * 109.67207 * 169.39294 * 13 12 11 34 34 H 1.09001 * 112.93828 * 48.44009 * 17 15 14 35 35 H 1.08998 * 113.76038 * 336.23896 * 18 17 15 36 36 H 1.09003 * 113.75919 * 107.60450 * 18 17 15 37 37 H 1.08999 * 111.12765 * 270.23892 * 22 20 19 38 38 H 1.08992 * 111.13095 * 34.40730 * 22 20 19 39 39 H 1.09000 * 110.31157 * 204.63816 * 23 22 20 40 40 H 1.08997 * 110.31549 * 82.46986 * 23 22 20 41 41 H 1.08999 * 109.82644 * 238.77278 * 25 24 23 42 42 H 1.08998 * 109.83221 * 117.80240 * 25 24 23 43 43 H 1.09002 * 113.75889 * 220.98911 * 26 19 18 44 44 H 1.09004 * 113.75723 * 89.63033 * 26 19 18 45 45 H 1.08998 * 109.61048 * 295.48196 * 27 14 13 46 46 H 1.09000 * 109.60668 * 174.97424 * 27 14 13 47 47 H 1.08999 * 109.60611 * 354.94880 * 28 11 9 48 48 H 1.09000 * 109.60591 * 115.46290 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5702 1.9991 -1.3969 5 1 1.3996 2.6750 0.6165 6 1 3.4949 1.4653 0.7805 7 6 2.0070 -1.2128 0.0005 8 1 1.4787 -2.1413 0.1595 9 6 3.4539 -1.2226 -0.2203 10 8 4.0240 -0.2035 -0.5626 11 7 4.1548 -2.3603 -0.0445 12 6 3.4673 -3.6226 0.2618 13 6 3.8840 -4.6689 -0.7858 14 7 5.3499 -4.6682 -0.8908 15 6 6.0508 -5.8058 -0.7142 16 8 7.2603 -5.7927 -0.8028 17 6 5.3316 -7.0938 -0.4066 18 6 4.9886 -7.2714 1.0835 19 7 5.4117 -8.6788 0.9114 20 6 6.2216 -9.1282 2.0516 21 1 6.8702 -8.3265 2.4045 22 6 5.3168 -9.6580 3.1974 23 6 6.2686 -10.6738 3.8779 24 8 7.0132 -11.2684 2.8030 25 6 7.0465 -10.3792 1.6804 26 6 6.2705 -8.3013 -0.2329 27 6 6.0378 -3.4048 -1.1916 28 6 5.6207 -2.3595 -0.1496 29 1 -0.4850 0.8401 0.0004 30 1 3.7536 -3.9631 1.2568 31 1 2.3886 -3.4710 0.2206 32 1 3.4478 -4.4163 -1.7523 33 1 3.5399 -5.6556 -0.4759 34 1 4.4933 -7.2828 -1.0771 35 1 5.6303 -6.6987 1.7531 36 1 3.9280 -7.1559 1.3067 37 1 5.0420 -8.8567 3.8833 38 1 4.4311 -10.1543 2.8010 39 1 5.6945 -11.4346 4.4066 40 1 6.9410 -10.1605 4.5653 41 1 6.6078 -10.8665 0.8097 42 1 8.0761 -10.0929 1.4658 43 1 6.2341 -9.0087 -1.0614 44 1 7.2871 -8.0299 0.0517 45 1 5.7551 -3.0622 -2.1869 46 1 7.1164 -3.5559 -1.1467 47 1 5.9645 -1.3736 -0.4624 48 1 6.0568 -2.6122 0.8169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896992513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:22 Heat of formation + Delta-G solvation = -67.709745 kcal Electronic energy + Delta-G solvation = -30052.028242 eV Core-core repulsion = 25915.326915 eV Total energy + Delta-G solvation = -4136.701327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28730 -39.83202 -38.77569 -37.91770 -36.25131 -33.39184 -32.95846 -32.68796 -31.33694 -30.03466 -28.04380 -27.36947 -26.57102 -26.02828 -23.56814 -22.97980 -22.55905 -21.56606 -20.58707 -19.68444 -18.51608 -17.70811 -17.31625 -16.68415 -16.61545 -16.04574 -15.80063 -15.76129 -15.19673 -15.12387 -14.87763 -14.48353 -14.30999 -14.27289 -14.11136 -13.71021 -13.30262 -13.16709 -12.95627 -12.70799 -12.52269 -12.36303 -12.23950 -11.95582 -11.89890 -11.49828 -11.44868 -11.26630 -11.23651 -11.14657 -11.05445 -11.01368 -10.84071 -10.51286 -9.93915 -9.80875 -9.49706 -9.27198 -9.12493 -8.88603 -7.97301 -7.63289 -6.73218 -4.96851 2.47020 2.86443 3.28665 3.37497 3.44264 3.58558 3.68290 3.90992 4.04975 4.10527 4.15172 4.28928 4.46936 4.48898 4.54036 4.70546 4.75562 4.84428 4.99564 5.03918 5.07095 5.11932 5.24343 5.27716 5.29844 5.32069 5.35541 5.39535 5.42299 5.45902 5.47623 5.62502 5.69012 5.70676 5.75364 5.82913 5.88941 6.08608 6.13730 6.27885 6.51544 6.55784 6.60426 6.91974 7.36757 7.46230 7.73164 8.08223 8.15941 8.58084 9.00235 9.90534 10.26760 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.002466 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.231339 B =11349.599213 C =12055.117927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.102 3.898 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.322 1.322 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.551 3.449 10 O -0.614 6.614 11 N -0.633 5.633 12 C 0.108 3.892 13 C 0.089 3.911 14 N -0.601 5.601 15 C 0.521 3.479 16 O -0.549 6.549 17 C -0.142 4.142 18 C 0.023 3.977 19 N -0.466 5.466 20 C 0.014 3.986 21 H 0.067 0.933 22 C -0.144 4.144 23 C 0.051 3.949 24 O -0.383 6.383 25 C 0.059 3.941 26 C 0.023 3.977 27 C 0.098 3.902 28 C 0.107 3.893 29 H 0.283 0.717 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -19.248 3.795 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.117 4.117 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.254 1.254 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.109 0.891 9 C 0.362 3.638 10 O -0.507 6.507 11 N -0.368 5.368 12 C -0.017 4.017 13 C -0.035 4.035 14 N -0.334 5.334 15 C 0.308 3.692 16 O -0.427 6.427 17 C -0.163 4.163 18 C -0.106 4.106 19 N -0.190 5.190 20 C -0.096 4.096 21 H 0.085 0.915 22 C -0.182 4.182 23 C -0.026 4.026 24 O -0.302 6.302 25 C -0.018 4.018 26 C -0.105 4.105 27 C -0.026 4.026 28 C -0.018 4.018 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.501 -19.417 3.522 21.487 hybrid contribution 0.647 1.455 0.135 1.598 sum 9.148 -17.963 3.657 20.487 Atomic orbital electron populations 1.69555 1.07991 1.30205 1.37574 1.25786 0.94739 1.02211 0.88960 0.85195 0.77930 0.77200 0.79645 1.20559 1.25397 1.18698 1.20757 0.89261 0.95814 1.50978 0.89117 1.18350 0.88265 0.80540 0.76656 1.90206 1.71942 1.32317 1.56193 1.47642 1.04467 1.08786 1.75915 1.21971 1.00181 0.83805 0.95745 1.22427 0.79091 1.00610 1.01366 1.48105 1.07714 1.08344 1.69222 1.20398 0.87482 0.84847 0.76423 1.90669 1.14025 1.85910 1.52095 1.23193 1.00715 0.93156 0.99274 1.23924 1.03283 0.89316 0.94067 1.68650 1.27394 1.18974 1.03954 1.23825 0.94871 0.97862 0.93021 0.91474 1.23243 0.99214 0.99263 0.96468 1.23372 0.93085 0.96028 0.90092 1.88413 1.75121 1.42434 1.24251 1.23115 0.99237 0.89335 0.90125 1.23855 0.96612 0.94840 0.95214 1.22097 0.98214 0.82961 0.99296 1.21607 0.83161 0.99753 0.97276 0.90664 0.92916 0.87011 0.90513 0.89316 0.85726 0.90560 0.87920 0.89896 0.89078 0.89444 0.92162 0.90192 0.91391 0.88517 0.89522 0.91074 0.88790 0.88346 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.32 13.92 55.55 0.77 -21.54 16 2 C 0.10 2.76 5.52 -17.37 -0.10 2.67 16 3 Si 0.97 24.68 25.92 -169.99 -4.41 20.27 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.32 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.26 -7.03 6.50 56.52 0.37 -6.67 16 7 C -0.53 -13.98 9.41 -35.63 -0.34 -14.32 16 8 H 0.09 2.30 5.88 -52.49 -0.31 2.00 16 9 C 0.55 13.76 7.38 -12.99 -0.10 13.66 16 10 O -0.61 -16.96 11.56 5.20 0.06 -16.90 16 11 N -0.63 -12.52 2.94 -173.87 -0.51 -13.03 16 12 C 0.11 1.67 6.51 -3.36 -0.02 1.64 16 13 C 0.09 1.09 6.49 -3.36 -0.02 1.07 16 14 N -0.60 -8.07 2.95 -172.21 -0.51 -8.58 16 15 C 0.52 6.75 7.23 -10.99 -0.08 6.68 16 16 O -0.55 -8.81 15.30 5.56 0.09 -8.73 16 17 C -0.14 -1.34 2.89 -90.84 -0.26 -1.60 16 18 C 0.02 0.20 7.12 -2.77 -0.02 0.18 16 19 N -0.47 -4.04 5.99 -228.00 -1.37 -5.40 16 20 C 0.01 0.12 2.36 -65.76 -0.16 -0.04 16 21 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 22 C -0.14 -1.05 6.80 -24.48 -0.17 -1.22 16 23 C 0.05 0.38 7.78 38.19 0.30 0.68 16 24 O -0.38 -3.94 11.36 -35.23 -0.40 -4.34 16 25 C 0.06 0.52 6.80 37.88 0.26 0.78 16 26 C 0.02 0.21 6.54 -2.76 -0.02 0.19 16 27 C 0.10 1.46 6.59 -3.59 -0.02 1.43 16 28 C 0.11 1.84 6.60 -3.59 -0.02 1.82 16 29 H 0.28 7.09 8.29 -40.82 -0.34 6.75 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.86 5.34 -51.93 -0.28 1.58 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.80 5.57 -51.93 -0.29 0.51 16 34 H 0.12 1.01 7.42 -51.93 -0.39 0.62 16 35 H 0.08 0.71 7.57 -51.93 -0.39 0.32 16 36 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.90 7.19 -51.93 -0.37 0.53 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 47 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -32.61 373.00 -8.79 -41.41 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.38 Total: -2.40 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -0.77 Total: 13.62 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -1.61 Total: -48.56 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.26 Total: -29.97 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.41 Total: 20.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.61 -8.79 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896992513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.305 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds