Wall clock time and date at job start Tue Mar 31 2020 19:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99960 * 2 1 4 4 H 1.48502 * 109.46791 * 269.99590 * 3 2 1 5 5 H 1.48496 * 109.47385 * 29.99662 * 3 2 1 6 6 H 1.48503 * 109.47485 * 149.99950 * 3 2 1 7 7 C 1.38814 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.47432 * 126.05698 * 359.96879 * 9 7 2 11 11 C 1.54503 * 107.15143 * 181.61819 * 10 9 7 12 12 C 1.56367 * 102.64443 * 22.79474 * 11 10 9 13 13 H 1.09000 * 113.70892 * 202.55454 * 12 11 10 14 14 C 1.53213 * 106.18645 * 78.27956 * 12 11 10 15 15 N 1.46519 * 110.08435 * 202.92654 * 14 12 11 16 16 C 1.34778 * 121.01959 * 235.70386 * 15 14 12 17 17 O 1.21290 * 119.99309 * 0.02562 * 16 15 14 18 18 C 1.50690 * 120.00707 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.47342 * 180.02562 * 18 16 15 20 20 C 1.46090 * 118.72494 * 90.00458 * 19 18 16 21 21 C 1.53024 * 109.92042 * 161.61856 * 20 19 18 22 22 O 1.43247 * 108.66892 * 49.16267 * 21 20 19 23 23 C 1.42962 * 112.98671 * 291.63360 * 22 21 20 24 24 C 1.33863 * 118.72948 * 269.73081 * 19 18 16 25 25 O 1.21281 * 118.83654 * 1.90945 * 24 19 18 26 26 C 1.47146 * 117.97263 * 55.68456 * 15 14 12 27 27 C 1.53041 * 107.68649 * 302.55423 * 26 15 14 28 28 C 1.46466 * 126.05480 * 179.97438 * 9 7 2 29 29 H 1.08989 * 108.34597 * 269.12584 * 28 9 7 30 30 H 0.97001 * 120.00311 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.90109 * 301.00115 * 10 9 7 32 32 H 1.08997 * 109.90429 * 62.05665 * 10 9 7 33 33 H 1.09004 * 110.77845 * 141.11220 * 11 10 9 34 34 H 1.08997 * 110.77709 * 264.36089 * 11 10 9 35 35 H 1.09002 * 109.35046 * 82.77495 * 14 12 11 36 36 H 1.09000 * 109.34359 * 323.07680 * 14 12 11 37 37 H 1.09004 * 109.47276 * 300.00451 * 18 16 15 38 38 H 1.09002 * 109.47057 * 60.00152 * 18 16 15 39 39 H 1.09000 * 109.39367 * 281.75288 * 20 19 18 40 40 H 1.08994 * 109.40104 * 41.48107 * 20 19 18 41 41 H 1.09005 * 109.59933 * 168.91213 * 21 20 19 42 42 H 1.08993 * 109.60717 * 289.40074 * 21 20 19 43 43 H 1.09000 * 109.41450 * 169.70540 * 23 22 21 44 44 H 1.09004 * 109.41533 * 289.56725 * 23 22 21 45 45 H 1.09002 * 109.81731 * 62.10237 * 26 15 14 46 46 H 1.09004 * 109.82067 * 183.00752 * 26 15 14 47 47 H 1.09004 * 109.15523 * 174.81719 * 27 26 15 48 48 H 1.08997 * 109.15455 * 294.03534 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1405 -2.5436 0.0007 11 6 -0.4379 -4.0592 0.0423 12 6 0.8748 -4.6489 0.6540 13 1 1.0339 -5.7012 0.4185 14 6 0.7970 -4.3902 2.1621 15 7 2.1421 -4.3927 2.7431 16 6 2.4563 -5.2150 3.7636 17 8 1.6198 -5.9686 4.2147 18 6 3.8471 -5.1991 4.3435 19 7 3.9337 -6.1760 5.4318 20 6 4.3346 -7.5449 5.1163 21 6 4.7990 -8.2584 6.3879 22 8 3.8164 -8.0582 7.4109 23 6 3.7454 -6.7026 7.8593 24 6 3.6478 -5.7783 6.6777 25 8 3.2930 -4.6329 6.8591 26 6 3.1397 -3.4703 2.1781 27 6 3.2668 -3.7807 0.6849 28 6 1.9200 -3.7267 0.0005 29 1 2.0448 -4.0466 -1.0338 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5651 -2.0579 0.8792 32 1 -0.5603 -2.1052 -0.9047 33 1 -1.2926 -4.2680 0.6857 34 1 -0.6077 -4.4476 -0.9619 35 1 0.1991 -5.1711 2.6322 36 1 0.3291 -3.4216 2.3386 37 1 4.5675 -5.4561 3.5669 38 1 4.0684 -4.2040 4.7295 39 1 3.4870 -8.0810 4.6895 40 1 5.1503 -7.5258 4.3936 41 1 4.9086 -9.3246 6.1897 42 1 5.7537 -7.8442 6.7118 43 1 2.8687 -6.5766 8.4945 44 1 4.6431 -6.4619 8.4288 45 1 2.8098 -2.4404 2.3146 46 1 4.1011 -3.6194 2.6696 47 1 3.9317 -3.0508 0.2232 48 1 3.6897 -4.7777 0.5616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036739340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:53 Heat of formation + Delta-G solvation = -64.146955 kcal Electronic energy + Delta-G solvation = -31108.477915 eV Core-core repulsion = 26971.931082 eV Total energy + Delta-G solvation = -4136.546833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04691 -39.89976 -38.26032 -37.80489 -35.51169 -34.97521 -32.82395 -31.63918 -30.76341 -29.81184 -28.99875 -27.65271 -26.33708 -25.01238 -24.20603 -23.61938 -22.55042 -20.26234 -19.98285 -19.08320 -18.22765 -17.98674 -17.45760 -17.03169 -16.37912 -16.13193 -15.71160 -15.58937 -15.15392 -14.93872 -14.82239 -14.39515 -14.13979 -13.94664 -13.74643 -13.56320 -13.29624 -13.09843 -12.82871 -12.45341 -12.16747 -12.15012 -11.98080 -11.63146 -11.52714 -11.43099 -11.11323 -11.06827 -10.86181 -10.80854 -10.68000 -10.18094 -10.06866 -9.94279 -9.82810 -9.69533 -9.65964 -9.62712 -8.84893 -8.62342 -8.18904 -6.84671 -5.74251 -3.07338 2.25969 2.49559 2.81872 3.34485 3.37310 3.41735 3.42107 3.44956 4.02546 4.40793 4.45982 4.57152 4.63331 4.77707 4.87133 4.93909 5.05930 5.11756 5.19535 5.25038 5.29061 5.33313 5.47362 5.50002 5.54340 5.56588 5.74367 5.84630 5.91356 6.01363 6.11717 6.23070 6.30407 6.34272 6.40943 6.42932 6.52012 6.68748 6.74998 6.86679 6.93097 7.08549 7.53581 7.59626 7.73795 7.79641 7.84645 8.22184 8.40318 9.17710 9.80183 10.47712 11.37773 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.003105 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.991807 B = 9014.242226 C = 9684.379238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.127 3.873 15 N -0.598 5.598 16 C 0.499 3.501 17 O -0.545 6.545 18 C 0.092 3.908 19 N -0.587 5.587 20 C 0.079 3.921 21 C 0.046 3.954 22 O -0.368 6.368 23 C 0.054 3.946 24 C 0.491 3.509 25 O -0.535 6.535 26 C 0.112 3.888 27 C -0.128 4.128 28 C 0.171 3.829 29 H 0.017 0.983 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -16.435 8.944 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.136 4.136 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.330 5.330 16 C 0.285 3.715 17 O -0.423 6.423 18 C -0.034 4.034 19 N -0.320 5.320 20 C -0.044 4.044 21 C -0.031 4.031 22 O -0.286 6.286 23 C -0.025 4.025 24 C 0.278 3.722 25 O -0.412 6.412 26 C -0.010 4.010 27 C -0.167 4.167 28 C 0.063 3.937 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.149 0.851 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.601 -16.140 9.386 21.470 hybrid contribution 0.562 1.207 -0.458 1.408 sum 11.163 -14.933 8.928 20.671 Atomic orbital electron populations 1.69949 1.04880 1.25040 1.56722 1.24779 0.95633 0.97568 1.02277 0.86191 0.78613 0.83854 0.77510 1.21712 1.21767 1.20697 1.18937 0.90338 0.82163 1.44021 0.90340 1.44313 1.01498 0.99346 1.86785 1.21242 0.84314 0.88252 1.01017 1.23186 0.95858 0.99560 0.99459 1.22808 0.97861 0.98292 0.94677 0.90540 1.21552 0.82662 1.02892 0.92427 1.48077 1.13495 1.38223 1.33248 1.20866 0.90359 0.80316 0.79939 1.90663 1.50509 1.40583 1.60558 1.21441 0.95702 0.95886 0.90375 1.47038 1.67522 1.10832 1.06584 1.22228 1.01452 0.81926 0.98775 1.23011 0.91366 1.02140 0.86630 1.88210 1.58900 1.25737 1.55788 1.22810 1.05351 0.80392 0.93952 1.20987 0.76889 0.89441 0.84863 1.90776 1.45839 1.19787 1.84776 1.21812 0.90370 0.95064 0.93781 1.21598 0.99331 1.00656 0.95121 1.20220 0.90722 0.87155 0.95587 0.96544 0.93753 0.93520 0.93925 0.92044 0.92362 0.90404 0.90346 0.87495 0.86643 0.90039 0.89525 0.86560 0.91808 0.85081 0.89241 0.88935 0.91262 0.90515 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.38 55.49 0.58 -25.62 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.23 -5.79 9.02 -15.06 -0.14 -5.92 16 8 H 0.08 1.91 6.69 -52.49 -0.35 1.55 16 9 N -0.59 -13.90 3.12 -164.52 -0.51 -14.42 16 10 C 0.18 4.11 4.64 -2.74 -0.01 4.09 16 11 C -0.14 -2.60 6.29 -24.13 -0.15 -2.76 16 12 C -0.12 -2.02 3.88 -88.21 -0.34 -2.36 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 14 C 0.13 2.32 5.45 -3.92 -0.02 2.30 16 15 N -0.60 -10.06 2.93 -172.99 -0.51 -10.57 16 16 C 0.50 8.27 7.77 -10.99 -0.09 8.18 16 17 O -0.55 -10.83 15.86 5.55 0.09 -10.74 16 18 C 0.09 1.15 4.13 -5.20 -0.02 1.13 16 19 N -0.59 -7.02 2.32 -175.80 -0.41 -7.42 16 20 C 0.08 0.65 6.67 -4.25 -0.03 0.62 16 21 C 0.05 0.29 6.89 37.17 0.26 0.55 16 22 O -0.37 -3.54 10.86 -35.23 -0.38 -3.92 16 23 C 0.05 0.52 6.98 35.83 0.25 0.77 16 24 C 0.49 6.61 7.58 -11.57 -0.09 6.52 16 25 O -0.53 -9.37 16.38 5.56 0.09 -9.28 16 26 C 0.11 1.76 6.26 -3.67 -0.02 1.73 16 27 C -0.13 -2.04 5.18 -27.63 -0.14 -2.18 16 28 C 0.17 3.26 2.84 -68.38 -0.19 3.07 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.21 6.99 -51.93 -0.36 0.85 16 32 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.06 1.04 7.97 -51.93 -0.41 0.63 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 36 H 0.08 1.64 6.79 -51.93 -0.35 1.29 16 37 H 0.11 0.95 7.57 -51.93 -0.39 0.56 16 38 H 0.12 1.52 7.04 -51.93 -0.37 1.15 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.46 7.99 -51.93 -0.41 0.05 16 41 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 43 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.75 7.48 -51.93 -0.39 1.37 16 46 H 0.07 0.83 5.99 -51.93 -0.31 0.52 16 47 H 0.08 1.26 7.01 -51.93 -0.36 0.89 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -34.64 369.42 -8.76 -43.40 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.41 Total: 1.15 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -0.84 Total: 15.49 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.85 Total: -58.03 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.20 Total: -23.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.64 -8.76 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036739340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.748 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds