Wall clock time and date at job start Tue Mar 31 2020 19:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47077 * 85.01944 * 3 2 1 5 5 H 1.48496 * 109.46859 * 325.02073 * 3 2 1 6 6 H 1.48497 * 109.47235 * 205.01983 * 3 2 1 7 7 C 1.38809 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00588 * 187.32894 * 7 2 1 9 9 N 1.36942 * 119.99937 * 7.33790 * 7 2 1 10 10 C 1.47432 * 126.05380 * 6.27210 * 9 7 2 11 11 C 1.54518 * 107.14028 * 178.31996 * 10 9 7 12 12 C 1.56016 * 102.70299 * 337.49931 * 11 10 9 13 13 H 1.08995 * 113.55659 * 157.21629 * 12 11 10 14 14 C 1.51626 * 105.66580 * 280.81754 * 12 11 10 15 15 N 1.46521 * 109.91330 * 157.33139 * 14 12 11 16 16 C 1.34781 * 121.00849 * 124.42905 * 15 14 12 17 17 O 1.21274 * 120.00338 * 0.02612 * 16 15 14 18 18 C 1.50703 * 119.99825 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.47068 * 180.02562 * 18 16 15 20 20 C 1.46093 * 118.73148 * 269.73631 * 19 18 16 21 21 C 1.53209 * 109.82159 * 161.46484 * 20 19 18 22 22 O 1.43245 * 108.51436 * 49.54313 * 21 20 19 23 23 C 1.42964 * 112.98415 * 291.45735 * 22 21 20 24 24 C 1.33873 * 118.72918 * 90.00230 * 19 18 16 25 25 O 1.21284 * 118.83172 * 1.88739 * 24 19 18 26 26 C 1.47138 * 117.98101 * 304.45129 * 15 14 12 27 27 C 1.53046 * 107.67513 * 57.45078 * 26 15 14 28 28 C 1.46464 * 126.05874 * 186.58896 * 9 7 2 29 29 H 1.08996 * 108.35004 * 90.11606 * 28 9 7 30 30 H 0.97003 * 120.00126 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.90124 * 297.82707 * 10 9 7 32 32 H 1.09003 * 109.89889 * 59.06795 * 10 9 7 33 33 H 1.09003 * 110.90638 * 219.11130 * 11 10 9 34 34 H 1.08998 * 110.57240 * 95.73739 * 11 10 9 35 35 H 1.08994 * 109.46138 * 37.21703 * 14 12 11 36 36 H 1.09000 * 109.40805 * 277.41409 * 14 12 11 37 37 H 1.09001 * 109.47586 * 300.00363 * 18 16 15 38 38 H 1.09007 * 109.46891 * 60.00463 * 18 16 15 39 39 H 1.08993 * 109.39411 * 281.78298 * 20 19 18 40 40 H 1.09007 * 109.39077 * 41.50270 * 20 19 18 41 41 H 1.08995 * 109.83279 * 289.74426 * 21 20 19 42 42 H 1.09003 * 109.53222 * 169.16299 * 21 20 19 43 43 H 1.08997 * 109.41178 * 289.48922 * 23 22 21 44 44 H 1.09002 * 109.35604 * 169.66937 * 23 22 21 45 45 H 1.09007 * 109.82032 * 297.90661 * 26 15 14 46 46 H 1.09008 * 109.82260 * 176.99323 * 26 15 14 47 47 H 1.09002 * 109.15284 * 185.15835 * 27 26 15 48 48 H 1.09002 * 109.10804 * 65.96176 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5042 2.6199 -0.8026 6 1 3.5964 1.4121 -0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3340 -2.3833 -0.1504 10 6 -0.1020 -2.5287 -0.4511 11 6 -0.3917 -4.0419 -0.5685 12 6 1.0130 -4.6357 -0.8974 13 1 1.1116 -5.6900 -0.6392 14 6 1.2289 -4.3813 -2.3765 15 7 2.6621 -4.3921 -2.6808 16 6 3.1662 -5.2160 -3.6208 17 8 2.4304 -5.9632 -4.2300 18 6 4.6442 -5.2087 -3.9150 19 7 4.9374 -6.1847 -4.9675 20 6 5.2652 -7.5554 -4.5826 21 6 5.0817 -8.4899 -5.7828 22 8 5.7630 -7.9238 -6.9085 23 6 5.1468 -6.7269 -7.3898 24 6 4.9000 -5.7848 -6.2445 25 8 4.6589 -4.6209 -6.4861 26 6 3.5344 -3.4766 -1.9286 27 6 3.3626 -3.7889 -0.4402 28 6 1.9077 -3.7260 -0.0353 29 1 1.8242 -4.0469 1.0030 30 1 -0.4850 0.8401 0.0004 31 1 -0.6954 -2.0966 0.3546 32 1 -0.3356 -2.0338 -1.3938 33 1 -1.0951 -4.2417 -1.3769 34 1 -0.7659 -4.4346 0.3769 35 1 0.8105 -3.4108 -2.6430 36 1 0.7311 -5.1601 -2.9544 37 1 4.9435 -4.2149 -4.2480 38 1 5.1957 -5.4709 -3.0120 39 1 6.2993 -7.5980 -4.2410 40 1 4.6052 -7.8722 -3.7750 41 1 4.0212 -8.5941 -6.0116 42 1 5.5061 -9.4671 -5.5520 43 1 4.1983 -6.9742 -7.8664 44 1 5.8039 -6.2494 -8.1167 45 1 3.2444 -2.4444 -2.1255 46 1 4.5730 -3.6316 -2.2212 47 1 3.9283 -3.0639 0.1450 48 1 3.7469 -4.7889 -0.2388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036739341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:56 Heat of formation + Delta-G solvation = -65.206383 kcal Electronic energy + Delta-G solvation = -31116.473877 eV Core-core repulsion = 26979.881104 eV Total energy + Delta-G solvation = -4136.592774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06485 -39.97844 -38.30998 -37.82146 -35.51706 -35.01826 -32.89582 -31.68964 -30.74507 -29.83996 -29.02485 -27.67913 -26.35056 -25.06290 -24.21786 -23.61941 -22.57739 -20.25143 -19.97002 -19.18217 -18.32288 -17.96156 -17.36315 -17.11056 -16.41419 -16.13228 -15.72227 -15.65300 -15.24727 -14.94045 -14.73080 -14.33666 -14.24530 -13.97976 -13.73788 -13.58554 -13.37307 -13.13126 -12.89673 -12.46948 -12.22550 -12.07398 -12.04468 -11.64999 -11.56827 -11.48070 -11.10779 -11.04701 -10.85107 -10.84103 -10.69945 -10.18902 -10.14097 -9.99134 -9.88337 -9.69119 -9.65303 -9.62418 -8.87825 -8.64438 -8.24907 -6.84833 -5.75034 -3.09635 2.23872 2.51464 2.75836 3.28832 3.36794 3.42041 3.42380 3.44682 4.03092 4.40725 4.45292 4.56796 4.68428 4.79085 4.89772 5.03232 5.08565 5.09472 5.18604 5.24305 5.27458 5.31828 5.38320 5.47414 5.50367 5.56136 5.70286 5.83000 5.90082 5.98633 6.08431 6.21129 6.25650 6.30893 6.38329 6.40483 6.49107 6.65136 6.72510 6.84469 6.88945 7.07309 7.44931 7.62177 7.68720 7.77606 7.83112 8.21573 8.33421 9.15654 9.79037 10.46477 11.36057 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.003100 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.378724 B = 9030.050745 C = 9754.436056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.128 3.872 15 N -0.598 5.598 16 C 0.500 3.500 17 O -0.550 6.550 18 C 0.091 3.909 19 N -0.587 5.587 20 C 0.083 3.917 21 C 0.044 3.956 22 O -0.372 6.372 23 C 0.053 3.947 24 C 0.492 3.508 25 O -0.536 6.536 26 C 0.111 3.889 27 C -0.129 4.129 28 C 0.171 3.829 29 H 0.019 0.981 30 H 0.252 0.748 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -17.087 -7.444 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.136 4.136 13 H 0.094 0.906 14 C 0.006 3.994 15 N -0.330 5.330 16 C 0.286 3.714 17 O -0.428 6.428 18 C -0.035 4.035 19 N -0.320 5.320 20 C -0.040 4.040 21 C -0.033 4.033 22 O -0.290 6.290 23 C -0.026 4.026 24 C 0.280 3.720 25 O -0.413 6.413 26 C -0.011 4.011 27 C -0.168 4.168 28 C 0.063 3.937 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.028 -16.713 -7.996 21.067 hybrid contribution 0.071 1.109 0.439 1.195 sum 10.099 -15.603 -7.557 20.064 Atomic orbital electron populations 1.69952 1.04940 1.25040 1.56437 1.24784 0.95581 0.97638 1.02231 0.86192 0.78744 0.83916 0.77446 1.21727 1.21729 1.20613 1.18936 0.90840 0.82395 1.43402 0.90343 1.44299 1.05126 0.99353 1.83057 1.21285 0.85448 0.88488 0.99976 1.23142 0.95134 0.99496 1.00270 1.22452 0.97680 0.98443 0.95061 0.90563 1.21296 0.79915 1.02881 0.95324 1.48109 1.09413 1.38364 1.37098 1.20881 0.90666 0.80209 0.79616 1.90633 1.60706 1.41143 1.50338 1.21429 0.93908 0.96130 0.92075 1.47051 1.68519 1.10784 1.05665 1.22213 1.01730 0.80935 0.99102 1.23048 0.98491 0.96828 0.84904 1.88168 1.53086 1.39729 1.48053 1.22817 1.01264 0.84194 0.94353 1.20975 0.76720 0.89804 0.84513 1.90770 1.48468 1.18372 1.83727 1.21831 0.92578 0.95106 0.91577 1.21610 0.99016 1.00731 0.95460 1.20213 0.90709 0.87179 0.95554 0.96348 0.93774 0.92334 0.95103 0.92061 0.92252 0.90452 0.90346 0.86518 0.87427 0.90421 0.89432 0.91308 0.86625 0.88987 0.85155 0.88999 0.91136 0.90445 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.09 10.54 55.49 0.58 -25.51 16 2 C -0.01 -0.15 5.45 -17.43 -0.10 -0.24 16 3 Si 0.91 21.37 29.56 -169.99 -5.02 16.35 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.23 -5.81 9.07 -15.06 -0.14 -5.94 16 8 H 0.08 1.90 6.67 -52.49 -0.35 1.55 16 9 N -0.59 -13.79 3.12 -164.48 -0.51 -14.31 16 10 C 0.17 3.98 4.69 -2.74 -0.01 3.97 16 11 C -0.14 -2.56 6.25 -24.32 -0.15 -2.71 16 12 C -0.12 -1.98 3.78 -89.18 -0.34 -2.31 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.13 2.26 5.37 -4.73 -0.03 2.23 16 15 N -0.60 -9.73 2.93 -173.95 -0.51 -10.24 16 16 C 0.50 7.95 7.77 -10.98 -0.09 7.87 16 17 O -0.55 -10.28 15.86 5.56 0.09 -10.19 16 18 C 0.09 1.12 4.15 -5.19 -0.02 1.10 16 19 N -0.59 -6.97 2.32 -175.67 -0.41 -7.38 16 20 C 0.08 0.68 6.63 -4.15 -0.03 0.65 16 21 C 0.04 0.32 6.91 37.27 0.26 0.58 16 22 O -0.37 -3.39 10.85 -35.23 -0.38 -3.77 16 23 C 0.05 0.51 6.98 35.83 0.25 0.76 16 24 C 0.49 6.60 7.58 -11.56 -0.09 6.51 16 25 O -0.54 -9.29 16.36 5.55 0.09 -9.20 16 26 C 0.11 1.71 6.27 -3.67 -0.02 1.69 16 27 C -0.13 -2.03 5.17 -27.64 -0.14 -2.18 16 28 C 0.17 3.23 2.89 -68.36 -0.20 3.04 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.53 7.07 -51.93 -0.37 1.16 16 32 H 0.03 0.79 7.51 -51.93 -0.39 0.40 16 33 H 0.06 1.02 7.94 -51.93 -0.41 0.60 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.56 6.76 -51.93 -0.35 1.21 16 36 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 37 H 0.12 1.54 6.99 -51.93 -0.36 1.18 16 38 H 0.11 0.97 7.68 -51.92 -0.40 0.57 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16 46 H 0.07 0.84 5.99 -51.92 -0.31 0.53 16 47 H 0.08 1.26 7.02 -51.93 -0.36 0.90 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.74 369.61 -8.76 -42.51 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.42 Total: 1.18 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -0.84 Total: 15.00 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.84 Total: -57.44 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.20 Total: -23.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.74 -8.76 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036739341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.701 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds