Wall clock time and date at job start Tue Mar 31 2020 19:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48498 * 109.46656 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 299.99746 * 3 2 1 6 6 H 1.48505 * 109.47118 * 59.99871 * 3 2 1 7 7 C 1.38810 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99746 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.48166 * 126.40460 * 0.03119 * 9 7 2 11 11 C 1.55288 * 107.04191 * 184.65695 * 10 9 7 12 12 C 1.53744 * 101.84083 * 22.47689 * 11 10 9 13 13 H 1.09001 * 111.30904 * 79.85165 * 12 11 10 14 14 C 1.52247 * 114.73782 * 207.24373 * 12 11 10 15 15 N 1.47716 * 106.36306 * 169.57184 * 14 12 11 16 16 C 1.34779 * 119.68240 * 127.97378 * 15 14 12 17 17 O 1.21282 * 119.99879 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.46505 * 109.47208 * 179.97438 * 18 16 15 20 20 C 1.46094 * 118.72731 * 269.73369 * 19 18 16 21 21 C 1.53210 * 109.82018 * 161.46459 * 20 19 18 22 22 O 1.43241 * 108.51356 * 49.53960 * 21 20 19 23 23 C 1.42968 * 112.98922 * 291.45581 * 22 21 20 24 24 C 1.33866 * 118.72810 * 90.00031 * 19 18 16 25 25 O 1.21282 * 118.83579 * 1.88224 * 24 19 18 26 26 C 1.46597 * 120.63719 * 307.94196 * 15 14 12 27 27 C 1.53951 * 110.57466 * 47.82778 * 26 15 14 28 28 C 1.45458 * 126.40751 * 179.71339 * 9 7 2 29 29 H 1.09007 * 109.26861 * 266.46513 * 28 9 7 30 30 H 0.97005 * 119.99956 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.91666 * 304.00643 * 10 9 7 32 32 H 1.08996 * 109.92008 * 65.10707 * 10 9 7 33 33 H 1.09000 * 110.95096 * 140.61292 * 11 10 9 34 34 H 1.08994 * 110.95580 * 264.30237 * 11 10 9 35 35 H 1.08996 * 110.07097 * 288.78346 * 14 12 11 36 36 H 1.08998 * 110.06586 * 50.35956 * 14 12 11 37 37 H 1.08998 * 109.47064 * 299.99453 * 18 16 15 38 38 H 1.09002 * 109.47042 * 59.99379 * 18 16 15 39 39 H 1.08999 * 109.39371 * 281.77739 * 20 19 18 40 40 H 1.08997 * 109.39341 * 41.49874 * 20 19 18 41 41 H 1.08999 * 109.82738 * 289.74522 * 21 20 19 42 42 H 1.09005 * 109.53299 * 169.15875 * 21 20 19 43 43 H 1.08994 * 109.41366 * 289.49691 * 23 22 21 44 44 H 1.09003 * 109.36200 * 169.66580 * 23 22 21 45 45 H 1.09001 * 109.25672 * 168.10885 * 26 15 14 46 46 H 1.09000 * 109.25881 * 287.58482 * 26 15 14 47 47 H 1.09007 * 109.87983 * 68.40512 * 27 26 15 48 48 H 1.08996 * 109.88795 * 189.48815 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 -0.1467 -2.5533 0.0016 11 6 -0.4339 -4.0746 0.1236 12 6 0.8689 -4.5919 0.7551 13 1 0.8861 -4.4132 1.8302 14 6 1.2012 -6.0422 0.4325 15 7 2.5830 -6.2672 0.9036 16 6 2.8501 -7.3096 1.7151 17 8 1.9578 -8.0572 2.0555 18 6 4.2573 -7.5462 2.1995 19 7 4.2845 -8.7309 3.0610 20 6 4.0757 -8.5600 4.4968 21 6 3.6863 -9.9005 5.1283 22 8 4.6215 -10.8957 4.6960 23 6 4.5092 -11.1999 3.3036 24 6 4.5052 -9.9275 2.5028 25 8 4.7094 -9.9872 1.3088 26 6 3.6669 -5.3680 0.4964 27 6 3.2482 -3.8980 0.6804 28 6 1.9078 -3.7210 -0.0036 29 1 1.9888 -4.0742 -1.0317 30 1 -0.4850 0.8401 0.0004 31 1 -0.5798 -2.0244 0.8506 32 1 -0.5638 -2.1670 -0.9283 33 1 -1.2850 -4.2592 0.7790 34 1 -0.5960 -4.5205 -0.8576 35 1 0.5148 -6.7084 0.9550 36 1 1.1407 -6.2094 -0.6429 37 1 4.9144 -7.7034 1.3442 38 1 4.5978 -6.6785 2.7646 39 1 4.9942 -8.1933 4.9550 40 1 3.2765 -7.8377 4.6629 41 1 2.6817 -10.1805 4.8115 42 1 3.7193 -9.8149 6.2145 43 1 3.5814 -11.7433 3.1251 44 1 5.3548 -11.8169 2.9992 45 1 4.5487 -5.5695 1.1046 46 1 3.9056 -5.5446 -0.5524 47 1 3.1557 -3.6691 1.7422 48 1 3.9878 -3.2417 0.2219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036739342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:59 Heat of formation + Delta-G solvation = -64.500844 kcal Electronic energy + Delta-G solvation = -30545.666359 eV Core-core repulsion = 26409.104180 eV Total energy + Delta-G solvation = -4136.562179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17119 -40.03992 -38.33271 -37.90324 -35.66084 -35.36297 -32.79484 -31.61778 -30.86872 -30.10007 -29.11769 -28.09822 -26.29118 -24.89843 -24.25460 -23.29765 -22.42383 -20.31109 -20.00277 -19.45354 -18.92459 -18.04079 -17.51640 -17.26140 -16.46091 -16.13309 -15.82567 -15.71804 -15.25646 -15.03141 -14.71745 -14.48361 -14.31265 -13.94238 -13.79225 -13.68264 -13.47728 -13.25397 -12.87553 -12.69610 -12.47014 -12.18459 -12.12135 -11.72597 -11.66342 -11.51975 -11.45408 -10.91438 -10.89100 -10.84951 -10.77292 -10.22804 -10.12896 -10.04504 -9.90724 -9.75844 -9.67681 -9.52062 -8.99159 -8.66828 -8.56391 -6.88103 -5.75899 -3.09253 2.13468 2.41724 2.58700 3.07885 3.33863 3.35983 3.41127 3.43963 3.95535 4.33982 4.40350 4.45019 4.61477 4.71176 4.81038 4.91482 4.99235 5.02172 5.04521 5.13162 5.18151 5.20930 5.29658 5.32963 5.49072 5.52872 5.55408 5.74721 5.80152 5.85076 5.98898 6.09554 6.13367 6.18641 6.30599 6.35252 6.44382 6.56087 6.58402 6.78277 6.98028 7.01055 7.40273 7.51713 7.57353 7.72185 7.77186 8.14455 8.19984 9.14925 9.78621 10.46626 11.36707 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.002544 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.163430 B =11001.907580 C =11347.507815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.122 4.122 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.604 5.604 16 C 0.499 3.501 17 O -0.543 6.543 18 C 0.089 3.911 19 N -0.587 5.587 20 C 0.082 3.918 21 C 0.044 3.956 22 O -0.372 6.372 23 C 0.053 3.947 24 C 0.494 3.506 25 O -0.539 6.539 26 C 0.109 3.891 27 C -0.130 4.130 28 C 0.168 3.832 29 H 0.020 0.980 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -18.440 8.853 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.143 4.143 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.337 5.337 16 C 0.285 3.715 17 O -0.421 6.421 18 C -0.037 4.037 19 N -0.320 5.320 20 C -0.041 4.041 21 C -0.033 4.033 22 O -0.290 6.290 23 C -0.027 4.027 24 C 0.281 3.719 25 O -0.417 6.417 26 C -0.014 4.014 27 C -0.169 4.169 28 C 0.059 3.941 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.041 -18.715 8.530 22.083 hybrid contribution 0.165 1.351 -0.209 1.377 sum 8.206 -17.364 8.321 20.930 Atomic orbital electron populations 1.69954 1.04906 1.24955 1.57025 1.24803 0.95684 0.97668 1.02319 0.86079 0.78697 0.83929 0.77251 1.20514 1.21778 1.21807 1.19031 0.90366 0.82280 1.43700 0.90313 1.44209 1.01666 0.99447 1.86608 1.21529 0.83911 0.88255 1.01030 1.22714 0.95756 0.99665 0.99366 1.22618 0.97900 0.93252 1.00519 0.90304 1.21624 0.81540 0.97088 0.99246 1.48318 1.10020 1.27233 1.48158 1.20987 0.91127 0.80694 0.78646 1.90653 1.47533 1.46169 1.57698 1.21471 0.95767 0.89072 0.97395 1.47063 1.70592 1.06489 1.07817 1.22243 1.02712 0.99650 0.79503 1.23058 0.93153 0.86276 1.00786 1.88175 1.58469 1.59168 1.23186 1.22818 1.05549 0.93803 0.80489 1.20986 0.76120 0.85852 0.88897 1.90749 1.49158 1.86427 1.15348 1.21843 0.88484 0.90521 1.00547 1.21901 0.99602 0.93341 1.02040 1.20610 0.91028 0.87227 0.95195 0.96271 0.93783 0.92780 0.94284 0.92079 0.92317 0.89368 0.91333 0.86485 0.87191 0.90284 0.89304 0.91275 0.86520 0.88963 0.85143 0.90458 0.91301 0.91375 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.43 55.49 0.58 -25.98 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -5.98 9.88 -15.06 -0.15 -6.13 16 8 H 0.08 1.99 7.22 -52.49 -0.38 1.62 16 9 N -0.59 -14.44 3.35 -163.10 -0.55 -14.99 16 10 C 0.18 4.18 5.45 -1.91 -0.01 4.17 16 11 C -0.14 -2.49 6.54 -25.13 -0.16 -2.65 16 12 C -0.12 -2.12 2.86 -89.37 -0.26 -2.38 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.13 1.94 5.96 -3.76 -0.02 1.91 16 15 N -0.60 -8.49 3.00 -172.49 -0.52 -9.01 16 16 C 0.50 7.11 7.73 -10.99 -0.08 7.02 16 17 O -0.54 -9.38 15.79 5.56 0.09 -9.29 16 18 C 0.09 0.97 4.12 -5.19 -0.02 0.95 16 19 N -0.59 -6.34 2.32 -175.67 -0.41 -6.75 16 20 C 0.08 0.62 6.63 -4.15 -0.03 0.60 16 21 C 0.04 0.30 6.91 37.27 0.26 0.56 16 22 O -0.37 -3.16 10.85 -35.23 -0.38 -3.54 16 23 C 0.05 0.46 6.98 35.83 0.25 0.71 16 24 C 0.49 6.00 7.58 -11.56 -0.09 5.91 16 25 O -0.54 -8.44 16.36 5.56 0.09 -8.35 16 26 C 0.11 1.35 6.21 -3.49 -0.02 1.33 16 27 C -0.13 -2.04 5.49 -26.98 -0.15 -2.19 16 28 C 0.17 3.22 2.57 -67.99 -0.17 3.05 16 29 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 1.42 7.23 -51.93 -0.38 1.05 16 32 H 0.04 1.02 7.75 -51.93 -0.40 0.61 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.09 1.40 6.99 -51.93 -0.36 1.03 16 36 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.12 1.29 7.08 -51.93 -0.37 0.93 16 38 H 0.11 0.88 7.44 -51.93 -0.39 0.49 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.07 0.51 8.10 -51.93 -0.42 0.08 16 42 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.72 5.84 -51.93 -0.30 0.42 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.12 8.13 -51.92 -0.42 0.69 16 48 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -34.68 374.29 -8.82 -43.50 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.58 Total: -0.29 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -0.75 Total: 12.53 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.89 Total: -56.72 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.20 Total: -21.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.68 -8.82 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036739342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.005 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds