Wall clock time and date at job start Tue Mar 31 2020 19:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 O 1.20923 * 124.56311 * 2 1 4 4 C 1.34170 * 112.18470 * 180.18996 * 3 2 1 5 5 C 1.48209 * 126.38133 * 179.78146 * 4 3 2 6 6 O 1.21496 * 119.99799 * 179.69031 * 5 4 3 7 7 N 1.34776 * 119.99870 * 359.68323 * 5 4 3 8 8 C 1.46501 * 119.99930 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47216 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.70294 * 60.30889 * 9 8 7 11 11 C 1.53200 * 109.58676 * 180.65923 * 9 8 7 12 12 C 1.53039 * 109.31236 * 174.42153 * 11 9 8 13 13 C 1.53039 * 109.53712 * 298.63770 * 12 11 9 14 14 C 1.52999 * 109.49778 * 181.31735 * 13 12 11 15 15 C 1.52997 * 109.49737 * 301.38010 * 13 12 11 16 16 C 1.52756 * 109.38740 * 61.23883 * 13 12 11 17 17 N 1.46922 * 109.58609 * 299.94679 * 9 8 7 18 18 C 1.36933 * 120.63313 * 6.58673 * 17 9 8 19 19 H 1.08011 * 119.99805 * 327.45268 * 18 17 9 20 20 C 1.38806 * 120.00697 * 147.45554 * 18 17 9 21 21 N 1.31623 * 119.99761 * 337.78327 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 157.50694 * 20 18 17 23 23 H 1.48505 * 109.47217 * 180.27610 * 22 20 18 24 24 H 1.48499 * 109.47144 * 300.27541 * 22 20 18 25 25 H 1.48498 * 109.46978 * 60.27770 * 22 20 18 26 26 C 1.36309 * 107.23549 * 359.51625 * 4 3 2 27 27 C 1.34829 * 124.56735 * 179.65569 * 2 1 3 28 28 O 1.21980 * 127.14592 * 0.03616 * 27 2 1 29 29 H 1.09002 * 109.47360 * 270.34028 * 1 2 3 30 30 H 1.09000 * 109.46986 * 30.34733 * 1 2 3 31 31 H 1.08999 * 109.46753 * 150.34031 * 1 2 3 32 32 H 0.96998 * 120.00384 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47288 * 60.00113 * 8 7 5 34 34 H 1.09000 * 109.47084 * 300.00135 * 8 7 5 35 35 H 1.09000 * 109.49920 * 294.37227 * 11 9 8 36 36 H 1.08999 * 109.49703 * 54.43825 * 11 9 8 37 37 H 1.09007 * 109.45995 * 58.65484 * 12 11 9 38 38 H 1.09000 * 109.46282 * 178.62660 * 12 11 9 39 39 H 1.09003 * 109.47301 * 59.99710 * 14 13 12 40 40 H 1.09002 * 109.47531 * 179.97438 * 14 13 12 41 41 H 1.09009 * 109.47113 * 299.99927 * 14 13 12 42 42 H 1.08997 * 109.47128 * 60.00144 * 15 13 12 43 43 H 1.09005 * 109.47561 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47432 * 300.00160 * 15 13 12 45 45 H 1.09001 * 109.51393 * 185.70766 * 16 13 12 46 46 H 1.09000 * 109.43301 * 65.42190 * 16 13 12 47 47 H 0.96999 * 119.99726 * 354.13881 * 21 20 18 48 48 H 1.07998 * 128.00126 * 180.23306 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7082 -0.0041 5 6 4.5760 1.6852 -0.0099 6 8 5.7264 1.2945 -0.0075 7 7 4.3132 3.0071 -0.0178 8 6 5.4148 3.9729 -0.0241 9 6 4.8474 5.3937 -0.0319 10 1 4.2396 5.5516 0.8590 11 6 5.9972 6.4058 -0.0551 12 6 5.4258 7.8177 -0.2032 13 6 4.6615 7.9245 -1.5247 14 6 4.1185 9.3457 -1.6872 15 6 5.6031 7.6017 -2.6867 16 6 3.5013 6.9309 -1.5213 17 7 4.0222 5.5879 -1.2319 18 6 3.7485 4.5384 -2.0678 19 1 4.4752 3.7506 -2.2012 20 6 2.5373 4.4870 -2.7438 21 7 1.5003 5.1573 -2.2880 22 14 2.3810 3.4727 -4.3046 23 1 0.9982 3.5883 -4.8337 24 1 3.3427 3.9739 -5.3191 25 1 2.6777 2.0495 -4.0018 26 6 3.5770 -0.6500 0.0040 27 6 2.2300 -1.1102 0.0067 28 8 1.8473 -2.2684 0.0130 29 1 -0.3634 0.0061 1.0276 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5085 32 1 3.3948 3.3191 -0.0194 33 1 6.0264 3.8206 -0.9134 34 1 6.0271 3.8314 0.8665 35 1 6.5610 6.3373 0.8753 36 1 6.6556 6.1892 -0.8963 37 1 4.7485 8.0242 0.6257 38 1 6.2404 8.5419 -0.1954 39 1 4.9475 10.0534 -1.6889 40 1 3.5746 9.4214 -2.6288 41 1 3.4468 9.5748 -0.8598 42 1 5.9888 6.5888 -2.5711 43 1 5.0585 7.6783 -3.6278 44 1 6.4330 8.3084 -2.6890 45 1 3.0176 6.9325 -2.4981 46 1 2.7814 7.2166 -0.7543 47 1 1.5569 5.6178 -1.4361 48 1 4.4813 -1.2404 0.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089631521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:24 Heat of formation + Delta-G solvation = 24.682322 kcal Electronic energy + Delta-G solvation = -31363.209743 eV Core-core repulsion = 27230.514836 eV Total energy + Delta-G solvation = -4132.694907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.92086 -39.65632 -38.70541 -37.99213 -35.43677 -34.17429 -33.63445 -32.42704 -32.04637 -29.94699 -28.54068 -27.23394 -26.78741 -25.55875 -24.33267 -23.33177 -22.59312 -22.20763 -20.41636 -19.96151 -18.54982 -18.22438 -18.03768 -17.39560 -16.68268 -15.89453 -15.66440 -15.14257 -14.78787 -14.56100 -14.39514 -14.08020 -13.81128 -13.66138 -13.60368 -13.52598 -13.46020 -13.31644 -13.12971 -12.82277 -12.66749 -12.21221 -12.01944 -11.69740 -11.51599 -11.36286 -10.92803 -10.88462 -10.79288 -10.47450 -10.26110 -10.19611 -10.07283 -10.00987 -9.91414 -9.84507 -9.70537 -9.24276 -8.75979 -8.45902 -8.39190 -6.99566 -6.18200 -3.45815 0.74797 1.74489 2.74539 3.02349 3.27551 3.37384 3.42308 3.57014 3.66506 4.40574 4.76603 4.87199 4.94755 5.09598 5.14886 5.15818 5.24655 5.26449 5.28331 5.40505 5.43888 5.53704 5.65821 5.80007 5.87956 5.90556 5.96451 5.99167 6.04384 6.10810 6.14876 6.24882 6.28220 6.30854 6.33926 6.45256 6.65213 6.66484 6.72739 6.79571 6.86833 7.07779 7.11861 7.61086 7.82959 7.90856 8.10420 8.30588 8.43313 8.92177 9.65291 10.12774 11.05024 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.004088 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.189570 B = 6846.885403 C = 7817.653827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.451 5.451 3 O 0.008 5.992 4 C 0.051 3.949 5 C 0.590 3.410 6 O -0.521 6.521 7 N -0.666 5.666 8 C 0.134 3.866 9 C 0.161 3.839 10 H 0.032 0.968 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.089 4.089 14 C -0.136 4.136 15 C -0.126 4.126 16 C 0.168 3.832 17 N -0.592 5.592 18 C -0.350 4.350 19 H 0.058 0.942 20 C -0.010 4.010 21 N -0.908 5.908 22 Si 1.050 2.950 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.293 1.293 26 C -0.257 4.257 27 C 0.480 3.520 28 O -0.535 6.535 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.421 0.579 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.016 0.984 47 H 0.270 0.730 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 1.584 5.572 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.213 5.213 3 O -0.003 6.003 4 C -0.008 4.008 5 C 0.371 3.629 6 O -0.400 6.400 7 N -0.316 5.316 8 C 0.011 3.989 9 C 0.054 3.946 10 H 0.049 0.951 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.090 4.090 14 C -0.194 4.194 15 C -0.183 4.183 16 C 0.042 3.958 17 N -0.317 5.317 18 C -0.479 4.479 19 H 0.076 0.924 20 C -0.215 4.215 21 N -0.547 5.547 22 Si 0.880 3.120 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.220 1.220 26 C -0.282 4.282 27 C 0.279 3.721 28 O -0.417 6.417 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.034 0.966 47 H 0.082 0.918 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.208 0.505 4.319 4.513 hybrid contribution 0.666 0.637 1.054 1.400 sum 1.874 1.142 5.373 5.804 Atomic orbital electron populations 1.22135 0.70826 1.05892 1.04219 1.46039 1.05966 0.99961 1.69296 1.84131 1.15274 1.20679 1.80254 1.23636 0.81736 0.96416 0.99036 1.16716 0.85172 0.81907 0.79100 1.90826 1.18217 1.78883 1.52033 1.46010 1.12679 1.03856 1.69016 1.21433 0.88511 0.87597 1.01396 1.20738 0.91977 0.90922 0.90927 0.95060 1.21999 0.98361 0.95710 1.00914 1.21409 0.98673 0.96073 0.97204 1.21037 0.97862 0.95323 0.94814 1.21791 1.00104 0.96187 1.01300 1.21716 0.97791 1.01468 0.97304 1.20891 0.91779 0.83169 0.99955 1.44087 1.59913 1.04606 1.23053 1.19890 1.00650 1.03415 1.23967 0.92400 1.25699 0.91050 1.00932 1.03773 1.70792 1.29239 1.33382 1.21296 0.83727 0.75996 0.75598 0.76711 1.21052 1.21843 1.22006 1.23180 0.99447 0.93367 1.12241 1.18338 0.86747 0.85463 0.81537 1.90925 1.79221 1.15924 1.55622 0.90269 0.88350 0.87851 0.74020 0.90750 0.91879 0.92874 0.91411 0.92893 0.93283 0.93626 0.92933 0.93290 0.91446 0.93521 0.94781 0.90658 0.96635 0.91842 0.79296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.16 11.22 59.85 0.67 1.83 16 2 N -0.45 -6.90 3.68 -69.77 -0.26 -7.15 16 3 O 0.01 0.13 10.69 16.83 0.18 0.31 16 4 C 0.05 0.85 7.25 -36.18 -0.26 0.59 16 5 C 0.59 10.42 7.84 -12.16 -0.10 10.33 16 6 O -0.52 -10.12 16.89 5.37 0.09 -10.03 16 7 N -0.67 -11.58 3.86 -61.14 -0.24 -11.82 16 8 C 0.13 2.23 4.43 -4.04 -0.02 2.21 16 9 C 0.16 2.72 3.02 -67.60 -0.20 2.52 16 10 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 11 C -0.13 -1.92 5.03 -26.61 -0.13 -2.05 16 12 C -0.10 -1.39 4.71 -26.69 -0.13 -1.52 16 13 C -0.09 -1.43 0.77 -154.62 -0.12 -1.55 16 14 C -0.14 -1.95 8.48 37.16 0.32 -1.63 16 15 C -0.13 -2.07 7.98 37.16 0.30 -1.77 16 16 C 0.17 3.32 3.35 -3.93 -0.01 3.31 16 17 N -0.59 -11.88 2.22 -165.04 -0.37 -12.25 16 18 C -0.35 -7.96 6.79 -15.06 -0.10 -8.06 16 19 H 0.06 1.38 6.00 -52.48 -0.31 1.07 16 20 C -0.01 -0.25 4.73 -17.43 -0.08 -0.34 16 21 N -0.91 -23.47 12.57 55.49 0.70 -22.77 16 22 Si 1.05 23.46 29.97 -169.99 -5.10 18.36 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.26 -4.17 10.94 -38.70 -0.42 -4.59 16 27 C 0.48 8.24 8.02 -14.66 -0.12 8.12 16 28 O -0.53 -10.40 17.84 4.94 0.09 -10.31 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 32 H 0.42 7.74 7.19 -40.82 -0.29 7.44 16 33 H 0.07 1.36 7.42 -51.93 -0.39 0.98 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 37 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.07 1.22 5.98 -51.93 -0.31 0.91 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.74 6.60 -51.93 -0.34 1.40 16 46 H 0.02 0.32 7.82 -51.93 -0.41 -0.08 16 47 H 0.27 6.99 6.70 -40.82 -0.27 6.72 16 48 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -28.31 381.44 -6.93 -35.24 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.36 Total: 7.30 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.41 Total: 7.39 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.16 Total: -54.00 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.36 Total: -20.04 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.10 Total: 18.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.31 -6.93 -35.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089631521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.921 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds