Wall clock time and date at job start Tue Mar 31 2020 19:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 O 1.20923 * 124.56311 * 2 1 4 4 C 1.34170 * 112.18470 * 180.18996 * 3 2 1 5 5 C 1.48209 * 126.38133 * 179.78146 * 4 3 2 6 6 O 1.21496 * 119.99799 * 179.69031 * 5 4 3 7 7 N 1.34776 * 119.99870 * 359.68323 * 5 4 3 8 8 C 1.46501 * 119.99930 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47216 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.70294 * 60.30889 * 9 8 7 11 11 C 1.53200 * 109.58676 * 180.65923 * 9 8 7 12 12 C 1.53039 * 109.31236 * 174.42153 * 11 9 8 13 13 C 1.53039 * 109.53712 * 298.63770 * 12 11 9 14 14 C 1.52999 * 109.49778 * 181.31735 * 13 12 11 15 15 C 1.52997 * 109.49737 * 301.38010 * 13 12 11 16 16 C 1.52756 * 109.38740 * 61.23883 * 13 12 11 17 17 N 1.46922 * 109.58609 * 299.94679 * 9 8 7 18 18 C 1.36933 * 120.63313 * 6.58673 * 17 9 8 19 19 H 1.08011 * 119.99805 * 327.45268 * 18 17 9 20 20 C 1.38806 * 120.00697 * 147.45554 * 18 17 9 21 21 N 1.31623 * 119.99761 * 337.78327 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 157.50694 * 20 18 17 23 23 H 1.48505 * 109.47217 * 180.27610 * 22 20 18 24 24 H 1.48499 * 109.47144 * 300.27541 * 22 20 18 25 25 H 1.48498 * 109.46978 * 60.27770 * 22 20 18 26 26 C 1.36309 * 107.23549 * 359.51625 * 4 3 2 27 27 C 1.34829 * 124.56735 * 179.65569 * 2 1 3 28 28 O 1.21980 * 127.14592 * 0.03616 * 27 2 1 29 29 H 1.09002 * 109.47360 * 270.34028 * 1 2 3 30 30 H 1.09000 * 109.46986 * 30.34733 * 1 2 3 31 31 H 1.08999 * 109.46753 * 150.34031 * 1 2 3 32 32 H 0.96998 * 120.00384 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47288 * 60.00113 * 8 7 5 34 34 H 1.09000 * 109.47084 * 300.00135 * 8 7 5 35 35 H 1.09000 * 109.49920 * 294.37227 * 11 9 8 36 36 H 1.08999 * 109.49703 * 54.43825 * 11 9 8 37 37 H 1.09007 * 109.45995 * 58.65484 * 12 11 9 38 38 H 1.09000 * 109.46282 * 178.62660 * 12 11 9 39 39 H 1.09003 * 109.47301 * 59.99710 * 14 13 12 40 40 H 1.09002 * 109.47531 * 179.97438 * 14 13 12 41 41 H 1.09009 * 109.47113 * 299.99927 * 14 13 12 42 42 H 1.08997 * 109.47128 * 60.00144 * 15 13 12 43 43 H 1.09005 * 109.47561 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47432 * 300.00160 * 15 13 12 45 45 H 1.09001 * 109.51393 * 185.70766 * 16 13 12 46 46 H 1.09000 * 109.43301 * 65.42190 * 16 13 12 47 47 H 0.96999 * 119.99726 * 354.13881 * 21 20 18 48 48 H 1.07998 * 128.00126 * 180.23306 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7082 -0.0041 5 6 4.5760 1.6852 -0.0099 6 8 5.7264 1.2945 -0.0075 7 7 4.3132 3.0071 -0.0178 8 6 5.4148 3.9729 -0.0241 9 6 4.8474 5.3937 -0.0319 10 1 4.2396 5.5516 0.8590 11 6 5.9972 6.4058 -0.0551 12 6 5.4258 7.8177 -0.2032 13 6 4.6615 7.9245 -1.5247 14 6 4.1185 9.3457 -1.6872 15 6 5.6031 7.6017 -2.6867 16 6 3.5013 6.9309 -1.5213 17 7 4.0222 5.5879 -1.2319 18 6 3.7485 4.5384 -2.0678 19 1 4.4752 3.7506 -2.2012 20 6 2.5373 4.4870 -2.7438 21 7 1.5003 5.1573 -2.2880 22 14 2.3810 3.4727 -4.3046 23 1 0.9982 3.5883 -4.8337 24 1 3.3427 3.9739 -5.3191 25 1 2.6777 2.0495 -4.0018 26 6 3.5770 -0.6500 0.0040 27 6 2.2300 -1.1102 0.0067 28 8 1.8473 -2.2684 0.0130 29 1 -0.3634 0.0061 1.0276 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5085 32 1 3.3948 3.3191 -0.0194 33 1 6.0264 3.8206 -0.9134 34 1 6.0271 3.8314 0.8665 35 1 6.5610 6.3373 0.8753 36 1 6.6556 6.1892 -0.8963 37 1 4.7485 8.0242 0.6257 38 1 6.2404 8.5419 -0.1954 39 1 4.9475 10.0534 -1.6889 40 1 3.5746 9.4214 -2.6288 41 1 3.4468 9.5748 -0.8598 42 1 5.9888 6.5888 -2.5711 43 1 5.0585 7.6783 -3.6278 44 1 6.4330 8.3084 -2.6890 45 1 3.0176 6.9325 -2.4981 46 1 2.7814 7.2166 -0.7543 47 1 1.5569 5.6178 -1.4361 48 1 4.4813 -1.2404 0.0071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089631521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:23 Heat of formation + Delta-G solvation = 8.774584 kcal Electronic energy + Delta-G solvation = -31363.899554 eV Core-core repulsion = 27230.514836 eV Total energy + Delta-G solvation = -4133.384718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.21802 -41.08805 -40.11329 -39.36433 -36.84634 -35.40402 -35.27911 -33.81110 -33.37562 -31.54666 -29.77609 -28.43155 -28.08370 -27.23564 -25.63640 -24.64129 -24.08422 -23.55084 -21.88326 -21.35087 -19.91289 -19.52004 -19.43692 -18.85725 -18.11054 -17.30887 -17.12346 -16.44795 -16.17969 -16.00122 -15.84164 -15.56397 -15.39668 -15.11574 -15.01655 -14.83233 -14.75203 -14.59618 -14.26092 -14.00889 -13.71662 -13.64501 -13.46084 -13.14471 -12.79800 -12.69326 -12.54556 -12.33064 -12.25140 -12.00912 -11.87384 -11.64105 -11.62982 -11.34713 -11.31956 -11.11154 -11.03669 -10.80706 -10.42656 -10.05865 -9.69847 -8.73544 -8.03281 -5.29749 -0.59066 0.54226 1.38468 1.54675 1.58342 1.69240 1.74755 1.90300 2.32623 2.61964 3.29400 3.43498 3.52934 3.67971 3.88335 3.91463 3.96183 4.12205 4.22561 4.24872 4.28619 4.35437 4.46328 4.56927 4.60431 4.65741 4.68673 4.78372 4.80440 4.85661 4.88992 5.00176 5.03719 5.08995 5.10766 5.18387 5.26151 5.28558 5.32787 5.46414 5.53292 5.60952 5.76277 6.05974 6.22508 6.45042 6.56140 6.78912 6.87770 7.16566 7.87201 8.36293 9.15933 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.004088 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.189570 B = 6846.885403 C = 7817.653827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.445 5.445 3 O 0.008 5.992 4 C 0.041 3.959 5 C 0.595 3.405 6 O -0.539 6.539 7 N -0.667 5.667 8 C 0.136 3.864 9 C 0.160 3.840 10 H 0.035 0.965 11 C -0.124 4.124 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.131 4.131 15 C -0.119 4.119 16 C 0.177 3.823 17 N -0.602 5.602 18 C -0.322 4.322 19 H 0.048 0.952 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 1.078 2.922 23 H -0.295 1.295 24 H -0.290 1.290 25 H -0.289 1.289 26 C -0.249 4.249 27 C 0.471 3.529 28 O -0.563 6.563 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.035 0.965 46 H 0.001 0.999 47 H 0.261 0.739 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 2.568 6.748 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.206 5.206 3 O -0.004 6.004 4 C -0.018 4.018 5 C 0.377 3.623 6 O -0.419 6.419 7 N -0.315 5.315 8 C 0.013 3.987 9 C 0.054 3.946 10 H 0.053 0.947 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.189 4.189 15 C -0.176 4.176 16 C 0.051 3.949 17 N -0.327 5.327 18 C -0.452 4.452 19 H 0.066 0.934 20 C -0.250 4.250 21 N -0.578 5.578 22 Si 0.908 3.092 23 H -0.221 1.221 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.274 4.274 27 C 0.271 3.729 28 O -0.448 6.448 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.071 0.929 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.526 1.517 5.502 6.242 hybrid contribution 0.267 0.347 0.718 0.841 sum 2.793 1.864 6.220 7.069 Atomic orbital electron populations 1.22562 0.68402 1.06808 1.06299 1.46398 1.07132 0.99287 1.67739 1.84144 1.15286 1.21053 1.79958 1.23438 0.81842 0.96309 1.00247 1.16722 0.85141 0.81935 0.78546 1.90812 1.18979 1.79155 1.52933 1.46026 1.12586 1.04048 1.68837 1.21485 0.88240 0.87210 1.01716 1.20905 0.92333 0.91968 0.89362 0.94747 1.21949 0.97273 0.94914 1.02238 1.21394 0.99216 0.96511 0.95800 1.20974 0.96491 0.95231 0.96076 1.21745 1.00910 0.95327 1.00938 1.21641 0.98365 1.01088 0.96527 1.20690 0.92852 0.84138 0.97172 1.44212 1.60135 1.04225 1.24128 1.19832 0.99304 1.03154 1.22943 0.93394 1.26220 0.91454 1.01932 1.05368 1.70850 1.30025 1.35545 1.21427 0.83298 0.75268 0.75164 0.75513 1.22116 1.21695 1.21613 1.23406 0.99796 0.93219 1.11013 1.18433 0.87216 0.85436 0.81818 1.90907 1.79714 1.16890 1.57311 0.87648 0.87443 0.86905 0.74602 0.92454 0.89428 0.89877 0.92030 0.92550 0.90721 0.91182 0.94037 0.92863 0.93311 0.95328 0.92100 0.94645 0.98065 0.92856 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 11.22 127.77 1.43 3.36 16 2 N -0.45 -13.21 3.68 -492.72 -1.82 -15.03 16 3 O 0.01 0.24 10.69 70.40 0.75 0.99 16 4 C 0.04 1.34 7.25 24.47 0.18 1.52 16 5 C 0.59 20.60 7.84 86.89 0.68 21.28 16 6 O -0.54 -20.44 16.89 -3.70 -0.06 -20.51 16 7 N -0.67 -22.74 3.86 -465.64 -1.80 -24.54 16 8 C 0.14 4.34 4.43 86.38 0.38 4.72 16 9 C 0.16 5.15 3.02 44.98 0.14 5.29 16 10 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 11 C -0.12 -3.28 5.03 30.67 0.15 -3.13 16 12 C -0.09 -2.35 4.71 30.62 0.14 -2.21 16 13 C -0.09 -2.65 0.77 -52.25 -0.04 -2.69 16 14 C -0.13 -3.50 8.48 71.98 0.61 -2.89 16 15 C -0.12 -3.75 7.98 71.98 0.57 -3.17 16 16 C 0.18 7.05 3.35 86.22 0.29 7.34 16 17 N -0.60 -24.07 2.22 -676.06 -1.50 -25.57 16 18 C -0.32 -14.75 6.79 84.03 0.57 -14.18 16 19 H 0.05 2.30 6.00 -2.90 -0.02 2.29 16 20 C -0.05 -2.48 4.73 84.86 0.40 -2.08 16 21 N -0.94 -49.67 12.57 21.65 0.27 -49.40 16 22 Si 1.08 48.26 29.97 68.60 2.06 50.32 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 26 C -0.25 -7.89 10.94 22.84 0.25 -7.64 16 27 C 0.47 15.86 8.02 85.25 0.68 16.55 16 28 O -0.56 -21.67 17.84 -5.25 -0.09 -21.76 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.11 2.13 8.03 -2.39 -0.02 2.11 16 32 H 0.42 15.20 7.19 -92.71 -0.67 14.53 16 33 H 0.06 2.04 7.42 -2.39 -0.02 2.03 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.74 6.34 -2.39 -0.02 1.72 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.05 1.71 5.98 -2.39 -0.01 1.69 16 43 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.03 1.68 6.60 -2.39 -0.02 1.67 16 46 H 0.00 0.06 7.82 -2.39 -0.02 0.04 16 47 H 0.26 13.91 6.70 -92.71 -0.62 13.29 16 48 H 0.20 5.69 8.06 -2.91 -0.02 5.67 16 Total: -1.00 -61.64 381.44 4.71 -56.93 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.46 Total: 26.49 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.45 Total: 22.08 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.84 Total: -114.54 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: 0.60 Total: -41.27 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.06 Total: 50.32 kcal Total: -61.64 4.71 -56.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089631521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.703 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds