Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47184 * 270.00279 * 3 2 1 5 5 H 1.48505 * 109.47095 * 29.99874 * 3 2 1 6 6 H 1.48495 * 109.47228 * 150.00046 * 3 2 1 7 7 C 1.38807 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99939 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49325 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11554 * 155.36265 * 10 9 7 12 12 O 1.42894 * 113.74235 * 137.95370 * 11 10 9 13 13 C 1.42904 * 114.00231 * 149.99839 * 12 11 10 14 14 C 1.53035 * 109.46119 * 210.00269 * 13 12 11 15 15 C 1.53191 * 109.31064 * 178.63003 * 14 13 12 16 16 N 1.46924 * 108.78009 * 54.63070 * 15 14 13 17 17 C 1.34777 * 120.62813 * 126.36522 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72946 * 17 16 15 20 20 H 1.08998 * 110.21708 * 39.79913 * 19 17 16 21 21 C 1.54485 * 110.24806 * 277.77943 * 19 17 16 22 22 C 1.54631 * 101.76380 * 266.41796 * 21 19 17 23 23 C 1.51281 * 104.19650 * 335.19904 * 22 21 19 24 24 O 1.21275 * 124.93970 * 196.27605 * 23 22 21 25 25 N 1.34416 * 110.11309 * 16.25457 * 23 22 21 26 26 C 1.46921 * 118.73733 * 306.64950 * 16 15 14 27 27 C 1.52760 * 109.00994 * 53.30469 * 26 16 15 28 28 C 1.47577 * 134.49053 * 0.02562 * 9 7 2 29 29 H 0.97000 * 120.00100 * 359.97438 * 1 2 3 30 30 H 1.09005 * 113.77007 * 41.06177 * 10 9 7 31 31 H 1.09004 * 113.87499 * 269.67878 * 10 9 7 32 32 H 1.09003 * 113.74163 * 269.15626 * 11 10 9 33 33 H 1.09002 * 109.45705 * 329.97288 * 13 12 11 34 34 H 1.08994 * 109.50277 * 58.67524 * 14 13 12 35 35 H 1.08997 * 109.49664 * 298.57457 * 14 13 12 36 36 H 1.09006 * 109.58943 * 294.84276 * 15 14 13 37 37 H 1.09008 * 109.58890 * 174.42502 * 15 14 13 38 38 H 1.09003 * 110.96690 * 24.53051 * 21 19 17 39 39 H 1.08995 * 110.97362 * 148.29695 * 21 19 17 40 40 H 1.09002 * 110.48317 * 216.52008 * 22 21 19 41 41 H 1.09006 * 110.59868 * 93.93559 * 22 21 19 42 42 H 0.97005 * 124.34767 * 180.42908 * 25 23 22 43 43 H 1.09004 * 109.58490 * 173.13980 * 26 16 15 44 44 H 1.09002 * 109.58518 * 293.56338 * 26 16 15 45 45 H 1.09005 * 109.56000 * 185.55371 * 27 26 16 46 46 H 1.09001 * 109.36136 * 65.50440 * 27 26 16 47 47 H 1.09007 * 113.76948 * 90.33556 * 28 9 7 48 48 H 1.09000 * 113.77154 * 318.94599 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0015 11 6 0.3476 -4.0832 0.6397 12 8 -0.3164 -5.2324 0.1102 13 6 -1.1709 -5.8927 1.0461 14 6 -1.2274 -7.3866 0.7189 15 6 -2.1169 -8.0965 1.7445 16 7 -3.4283 -7.4347 1.7718 17 6 -4.5602 -8.1461 1.6004 18 8 -4.5022 -9.3443 1.4221 19 6 -5.8981 -7.4536 1.6371 20 1 -5.8389 -6.4923 1.1267 21 6 -6.3587 -7.2573 3.0986 22 6 -7.2268 -8.5163 3.3273 23 6 -7.6812 -8.9108 1.9393 24 8 -8.5958 -9.6696 1.6974 25 7 -6.9241 -8.2975 1.0134 26 6 -3.4821 -5.9817 1.9831 27 6 -2.5777 -5.2964 0.9603 28 6 -0.1032 -2.7574 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 2.5630 -4.0326 0.6531 31 1 1.8320 -4.2363 -0.9985 32 1 0.3608 -4.0646 1.7295 33 1 -0.7794 -5.7563 2.0542 34 1 -0.2221 -7.8058 0.7573 35 1 -1.6420 -7.5249 -0.2796 36 1 -1.6568 -8.0366 2.7309 37 1 -2.2407 -9.1414 1.4598 38 1 -5.5061 -7.2429 3.7776 39 1 -6.9531 -6.3496 3.2018 40 1 -8.0847 -8.2790 3.9565 41 1 -6.6349 -9.3141 3.7761 42 1 -7.0410 -8.3994 0.0558 43 1 -4.5064 -5.6316 1.8556 44 1 -3.1356 -5.7457 2.9892 45 1 -2.5333 -4.2277 1.1706 46 1 -2.9795 -5.4543 -0.0405 47 1 -0.5271 -2.8730 -0.9981 48 1 -0.7168 -2.1391 0.6546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093593521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = -50.016762 kcal Electronic energy + Delta-G solvation = -29586.162241 eV Core-core repulsion = 25450.228139 eV Total energy + Delta-G solvation = -4135.934102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42146 -39.84642 -38.75857 -37.49061 -36.45675 -35.57004 -32.48749 -31.91447 -31.63554 -31.34316 -28.60679 -27.48828 -25.19503 -24.83510 -23.64672 -23.22393 -22.69561 -21.17670 -20.89315 -19.78418 -19.23736 -18.16357 -17.67904 -16.90294 -16.71447 -16.36198 -15.79450 -15.45643 -15.19424 -15.03661 -14.73768 -14.47147 -14.13531 -14.11557 -13.93268 -13.78244 -13.58084 -13.36627 -13.06325 -13.00558 -12.53078 -12.12920 -12.05786 -11.97628 -11.83334 -11.74943 -11.45356 -11.30282 -11.14664 -10.94514 -10.67946 -10.59699 -10.52588 -10.40986 -10.23564 -10.04576 -9.60951 -9.39646 -9.05748 -8.85580 -8.79817 -6.96090 -5.84076 -3.16842 2.08666 2.20767 2.52715 2.99773 3.34572 3.39350 3.41313 3.80409 3.87877 3.89671 3.97889 4.24996 4.42291 4.46610 4.62727 4.66761 4.77518 4.87739 4.97427 5.02393 5.15477 5.16097 5.22467 5.26356 5.30547 5.34795 5.37240 5.43815 5.51277 5.55597 5.65733 5.68470 5.80805 5.99700 6.09745 6.21284 6.32162 6.35682 6.56401 6.59294 6.60102 6.96803 7.03791 7.16212 7.46065 7.72291 7.80317 7.88257 7.91530 8.97827 9.63392 10.51899 11.33189 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002114 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.352432 B =13244.928682 C =14086.268125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.119 3.881 11 C 0.034 3.966 12 O -0.372 6.372 13 C 0.093 3.907 14 C -0.132 4.132 15 C 0.114 3.886 16 N -0.607 5.607 17 C 0.502 3.498 18 O -0.530 6.530 19 C 0.110 3.890 20 H 0.117 0.883 21 C -0.120 4.120 22 C -0.157 4.157 23 C 0.528 3.472 24 O -0.532 6.532 25 N -0.709 5.709 26 C 0.105 3.895 27 C -0.160 4.160 28 C 0.151 3.849 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.415 0.585 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -14.279 8.333 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.337 5.337 10 C -0.008 4.008 11 C -0.024 4.024 12 O -0.290 6.290 13 C 0.034 3.966 14 C -0.170 4.170 15 C -0.008 4.008 16 N -0.341 5.341 17 C 0.288 3.712 18 O -0.406 6.406 19 C 0.001 3.999 20 H 0.135 0.865 21 C -0.158 4.158 22 C -0.197 4.197 23 C 0.315 3.685 24 O -0.408 6.408 25 N -0.365 5.365 26 C -0.018 4.018 27 C -0.199 4.199 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.254 0.746 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.578 -15.047 8.058 20.625 hybrid contribution 0.648 1.212 -0.490 1.459 sum -10.930 -13.835 7.568 19.187 Atomic orbital electron populations 1.69819 1.05038 1.25416 1.56561 1.24806 0.95738 0.97615 1.02318 0.86089 0.78617 0.83210 0.77660 1.21538 1.21569 1.20552 1.18996 0.90277 0.81605 1.44003 0.90074 1.45662 1.02597 0.99327 1.86108 1.22760 0.94012 0.86185 0.97794 1.25100 0.94572 0.85411 0.97354 1.87961 1.60138 1.42992 1.37902 1.21983 0.89923 0.91616 0.93055 1.22002 1.00585 0.94419 1.00003 1.21640 0.81600 0.98144 0.99400 1.48206 1.06117 1.08571 1.71204 1.20953 0.85831 0.87711 0.76688 1.90734 1.86859 1.14485 1.48482 1.21661 0.86442 0.94800 0.97043 0.86525 1.22613 1.01072 0.99230 0.92933 1.22360 1.02072 0.99174 0.96082 1.20804 0.80861 0.78653 0.88192 1.90765 1.29931 1.35402 1.84655 1.45908 1.32364 1.48499 1.09693 1.21822 1.01329 0.78663 0.99965 1.22429 0.95996 1.01362 1.00085 1.22699 0.88183 0.88840 0.97706 0.93596 0.93617 0.94035 0.90115 0.92215 0.89854 0.90743 0.91031 0.88589 0.88537 0.88185 0.87439 0.87452 0.74596 0.89366 0.90445 0.89272 0.90609 0.94958 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 11.38 55.49 0.63 -25.94 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.61 -15.44 3.70 -178.17 -0.66 -16.09 16 10 C 0.12 2.42 8.77 -2.98 -0.03 2.40 16 11 C 0.03 0.61 4.46 -25.79 -0.11 0.50 16 12 O -0.37 -5.89 10.01 -35.23 -0.35 -6.24 16 13 C 0.09 1.06 2.57 -26.69 -0.07 0.99 16 14 C -0.13 -1.30 5.73 -26.61 -0.15 -1.45 16 15 C 0.11 0.98 6.43 -3.71 -0.02 0.95 16 16 N -0.61 -4.89 2.98 -173.03 -0.52 -5.41 16 17 C 0.50 4.64 6.86 -10.98 -0.08 4.56 16 18 O -0.53 -7.05 15.99 5.55 0.09 -6.96 16 19 C 0.11 0.70 2.96 -68.16 -0.20 0.50 16 20 H 0.12 0.48 6.54 -51.93 -0.34 0.14 16 21 C -0.12 -0.51 6.47 -25.09 -0.16 -0.68 16 22 C -0.16 -1.02 6.85 -26.74 -0.18 -1.20 16 23 C 0.53 5.51 8.43 -10.86 -0.09 5.42 16 24 O -0.53 -7.82 18.03 5.56 0.10 -7.72 16 25 N -0.71 -5.99 5.47 -53.88 -0.29 -6.29 16 26 C 0.10 0.68 6.23 -3.94 -0.02 0.65 16 27 C -0.16 -1.55 5.68 -26.84 -0.15 -1.71 16 28 C 0.15 3.45 7.35 -2.96 -0.02 3.43 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.36 7.46 -51.93 -0.39 0.97 16 33 H 0.06 0.64 7.42 -51.93 -0.39 0.25 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.93 7.01 -51.92 -0.36 0.57 16 38 H 0.10 0.33 7.89 -51.93 -0.41 -0.08 16 39 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.41 3.24 8.96 -40.82 -0.37 2.88 16 43 H 0.09 0.37 5.41 -51.93 -0.28 0.08 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 48 H 0.07 1.78 7.15 -51.93 -0.37 1.41 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -36.18 385.12 -9.30 -45.48 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.52 Total: -0.99 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.56 Total: 7.77 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.84 Total: -53.73 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.16 Total: -20.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.18 -9.30 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093593521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.537 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds