Wall clock time and date at job start Tue Mar 31 2020 19:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.50360 * 2 1 4 4 C 1.53120 * 109.50492 * 239.88055 * 2 1 3 5 5 C 1.53120 * 109.16302 * 297.71484 * 4 2 1 6 6 C 1.53041 * 109.27759 * 302.34684 * 5 4 2 7 7 H 1.09003 * 109.45065 * 299.16489 * 6 5 4 8 8 C 1.52994 * 109.46184 * 179.19416 * 6 5 4 9 9 N 1.46496 * 109.47063 * 184.94383 * 8 6 5 10 10 C 1.34783 * 119.99838 * 179.97438 * 9 8 6 11 11 O 1.21580 * 120.00059 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99825 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99800 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47115 * 325.00065 * 13 12 10 15 15 C 1.50698 * 109.46821 * 205.00238 * 13 12 10 16 16 H 1.08001 * 120.00545 * 354.17145 * 15 13 12 17 17 C 1.37877 * 119.99801 * 174.17772 * 15 13 12 18 18 N 1.31514 * 119.99992 * 332.35926 * 17 15 13 19 19 Si 1.86801 * 120.00304 * 152.36170 * 17 15 13 20 20 H 1.48493 * 109.47430 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47232 * 59.99702 * 19 17 15 22 22 H 1.48501 * 109.47070 * 299.99723 * 19 17 15 23 23 C 1.52995 * 109.46864 * 85.00415 * 13 12 10 24 24 F 1.39906 * 109.47245 * 176.78560 * 23 13 12 25 25 F 1.39898 * 109.47198 * 296.78422 * 23 13 12 26 26 F 1.39896 * 109.47418 * 56.78781 * 23 13 12 27 27 N 1.46843 * 109.52491 * 59.17660 * 6 5 4 28 28 C 1.46852 * 111.19982 * 298.25942 * 27 6 5 29 29 H 1.08999 * 109.47444 * 299.91965 * 1 2 3 30 30 H 1.09002 * 109.47337 * 59.91969 * 1 2 3 31 31 H 1.09001 * 109.47381 * 179.91840 * 1 2 3 32 32 H 1.09005 * 109.46867 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.46867 * 300.07814 * 3 2 1 34 34 H 1.08997 * 109.47141 * 60.08279 * 3 2 1 35 35 H 1.08995 * 109.52294 * 57.62069 * 4 2 1 36 36 H 1.09003 * 109.52485 * 177.80656 * 4 2 1 37 37 H 1.08998 * 109.50314 * 182.40319 * 5 4 2 38 38 H 1.09005 * 109.50273 * 62.28311 * 5 4 2 39 39 H 1.09004 * 109.47292 * 64.94475 * 8 6 5 40 40 H 1.09005 * 109.47151 * 304.94754 * 8 6 5 41 41 H 0.96999 * 120.00158 * 0.02562 * 9 8 6 42 42 H 0.97004 * 119.99652 * 0.02562 * 12 10 9 43 43 H 0.97002 * 120.00138 * 354.46119 * 18 17 15 44 44 H 1.00897 * 111.00242 * 174.16104 * 27 6 5 45 45 H 1.08996 * 109.46575 * 181.76135 * 28 27 6 46 46 H 1.09002 * 109.45930 * 301.73597 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0412 -0.7243 -1.2485 5 6 1.5749 -2.1823 -1.2100 6 6 2.0845 -2.8420 0.0734 7 1 3.1742 -2.8195 0.0852 8 6 1.6040 -4.2936 0.1258 9 7 1.9908 -4.8900 1.4068 10 6 1.6705 -6.1709 1.6778 11 8 1.0610 -6.8314 0.8590 12 7 2.0267 -6.7197 2.8561 13 6 1.6781 -8.1118 3.1509 14 1 0.7095 -8.3451 2.7090 15 6 1.6092 -8.3070 4.6436 16 1 1.8966 -7.5047 5.3071 17 6 1.1795 -9.5100 5.1624 18 7 0.3487 -10.2631 4.4753 19 14 1.7773 -10.0701 6.8412 20 1 1.1727 -11.3864 7.1682 21 1 1.3772 -9.0736 7.8670 22 1 3.2569 -10.1953 6.8234 23 6 2.7435 -9.0396 2.5638 24 9 2.4498 -10.3635 2.9078 25 9 2.7568 -8.9118 1.1707 26 9 3.9981 -8.6921 3.0760 27 7 1.5674 -2.1131 1.2386 28 6 2.0408 -0.7230 1.2483 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 3.1308 1.4416 -0.0005 33 1 1.6765 1.9566 -0.8892 34 1 1.6789 1.9558 0.8907 35 1 1.6442 -0.2383 -2.1397 36 1 3.1305 -0.6906 -1.2687 37 1 1.9715 -2.7141 -2.0748 38 1 0.4856 -2.2166 -1.2290 39 1 2.0590 -4.8566 -0.6892 40 1 0.5190 -4.3211 0.0250 41 1 2.4767 -4.3629 2.0602 42 1 2.5133 -6.1928 3.5092 43 1 -0.0246 -9.9375 3.6414 44 1 1.8111 -2.5840 2.0971 45 1 1.6669 -0.2182 2.1390 46 1 3.1308 -0.7106 1.2545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576416721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:37 Heat of formation + Delta-G solvation = -200.069895 kcal Electronic energy + Delta-G solvation = -30846.042536 eV Core-core repulsion = 26161.744902 eV Total energy + Delta-G solvation = -4684.297635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.72311 -46.27484 -46.17750 -40.10697 -39.18404 -35.85027 -34.73363 -33.18124 -32.56344 -32.04192 -28.81798 -27.49207 -27.35458 -24.83279 -24.43273 -23.59556 -21.77123 -21.10080 -20.35488 -18.80625 -18.44028 -17.55148 -17.11303 -16.99827 -16.59302 -16.14573 -15.59069 -15.32267 -14.96559 -14.56221 -14.42608 -14.18086 -13.92289 -13.78616 -13.37785 -13.30369 -13.18639 -13.10634 -12.83241 -12.70171 -12.49350 -12.40870 -12.40353 -12.36822 -12.24613 -12.04993 -11.93656 -11.55222 -11.29560 -11.21369 -11.02348 -10.84967 -10.75572 -10.58907 -10.45221 -10.20169 -9.67181 -9.53667 -8.86915 -8.65887 -8.42936 -8.29061 -6.77630 -4.48382 3.06943 3.31732 3.39020 3.56151 3.66956 3.85429 4.22637 4.32602 4.33341 4.45975 4.54043 4.66012 4.84493 4.86583 4.89950 5.00999 5.13032 5.21452 5.33303 5.38432 5.43758 5.44198 5.48932 5.58438 5.61800 5.64925 5.69102 5.73020 5.76168 5.77727 5.89434 5.95185 5.99400 6.07902 6.31262 6.60171 6.67819 6.79264 7.07052 7.10773 7.20496 7.55824 8.12006 8.40958 8.55477 9.09206 9.21233 10.57299 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002602 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.762214 B =10757.183399 C =11359.363136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.079 3.921 7 H 0.043 0.957 8 C 0.147 3.853 9 N -0.750 5.750 10 C 0.699 3.301 11 O -0.584 6.584 12 N -0.721 5.721 13 C 0.255 3.745 14 H 0.078 0.922 15 C -0.650 4.650 16 H 0.073 0.927 17 C 0.052 3.948 18 N -0.846 5.846 19 Si 1.060 2.940 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.413 3.587 24 F -0.177 7.177 25 F -0.205 7.205 26 F -0.199 7.199 27 N -0.680 5.680 28 C 0.069 3.931 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.388 0.612 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.342 0.658 45 H 0.074 0.926 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 20.328 -7.212 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.031 4.031 7 H 0.061 0.939 8 C 0.022 3.978 9 N -0.408 5.408 10 C 0.399 3.601 11 O -0.461 6.461 12 N -0.373 5.373 13 C 0.148 3.852 14 H 0.096 0.904 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.162 4.162 18 N -0.474 5.474 19 Si 0.885 3.115 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.207 1.207 23 C 0.357 3.643 24 F -0.158 7.158 25 F -0.187 7.187 26 F -0.181 7.181 27 N -0.313 5.313 28 C -0.060 4.060 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.221 0.779 42 H 0.229 0.771 43 H 0.089 0.911 44 H 0.162 0.838 45 H 0.093 0.907 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.148 18.545 -7.255 20.161 hybrid contribution 1.833 1.493 -0.340 2.388 sum 4.981 20.038 -7.594 22.000 Atomic orbital electron populations 1.21789 0.93676 1.02962 1.00662 1.20591 0.96753 0.94432 0.94663 1.21848 1.00730 0.95472 1.01901 1.21634 1.00230 0.95297 0.97479 1.21604 1.02389 0.95224 0.95839 1.21734 0.96847 0.92468 0.92050 0.93947 1.21206 1.00952 0.90402 0.85204 1.45014 1.63606 1.12155 1.20015 1.16067 0.79933 0.81306 0.82840 1.90918 1.45872 1.61494 1.47829 1.45080 1.61297 1.14126 1.16797 1.19516 0.91598 0.75791 0.98294 0.90431 1.21570 1.54964 1.04111 0.87852 0.90917 1.25915 0.92310 0.92818 1.05128 1.70744 1.20714 1.40340 1.15649 0.83711 0.76849 0.76674 0.74221 1.20371 1.20976 1.20701 1.23086 0.84114 0.82420 0.74669 1.93150 1.93153 1.37618 1.91895 1.93101 1.96801 1.95951 1.32810 1.93007 1.45674 1.92196 1.87205 1.60234 1.63731 1.02363 1.05000 1.21967 0.96779 0.89087 0.98189 0.93151 0.93559 0.90914 0.92900 0.92470 0.92571 0.91641 0.92334 0.91236 0.90312 0.91433 0.90900 0.77905 0.77069 0.91080 0.83785 0.90721 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.03 37.15 0.30 -0.78 16 2 C -0.06 -0.47 0.77 -154.43 -0.12 -0.59 16 3 C -0.14 -0.89 8.48 37.16 0.32 -0.57 16 4 C -0.11 -0.80 4.79 -26.61 -0.13 -0.93 16 5 C -0.11 -0.95 5.02 -26.65 -0.13 -1.08 16 6 C 0.08 0.75 2.67 -67.73 -0.18 0.57 16 7 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 8 C 0.15 1.86 5.37 -4.05 -0.02 1.84 16 9 N -0.75 -10.65 5.26 -65.23 -0.34 -10.99 16 10 C 0.70 13.85 8.17 -86.91 -0.71 13.14 16 11 O -0.58 -14.01 14.90 5.30 0.08 -13.93 16 12 N -0.72 -14.67 4.94 -59.82 -0.30 -14.97 16 13 C 0.26 6.31 2.00 -69.09 -0.14 6.17 16 14 H 0.08 2.14 6.46 -51.93 -0.34 1.81 16 15 C -0.65 -16.71 8.32 -34.44 -0.29 -17.00 16 16 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 17 C 0.05 1.39 4.23 -17.82 -0.08 1.31 16 18 N -0.85 -23.93 12.33 55.43 0.68 -23.25 16 19 Si 1.06 23.48 29.99 -169.99 -5.10 18.38 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.41 10.41 2.82 37.15 0.10 10.51 16 24 F -0.18 -4.75 14.70 2.25 0.03 -4.72 16 25 F -0.20 -5.16 15.77 2.25 0.04 -5.12 16 26 F -0.20 -4.77 16.97 2.25 0.04 -4.73 16 27 N -0.68 -6.18 5.78 -106.76 -0.62 -6.80 16 28 C 0.07 0.54 5.27 -3.83 -0.02 0.52 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.72 6.58 -51.93 -0.34 0.38 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.39 4.34 7.12 -40.82 -0.29 4.05 16 42 H 0.40 6.92 8.54 -40.82 -0.35 6.57 16 43 H 0.28 8.00 7.25 -40.82 -0.30 7.70 16 44 H 0.34 3.05 7.07 -39.29 -0.28 2.77 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -30.69 370.67 -7.90 -38.59 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.91 Total: 8.83 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -1.10 Total: 13.12 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.57 Total: -56.01 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.11 Total: -14.58 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.10 Total: 18.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.69 -7.90 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576416721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.485 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds