Wall clock time and date at job start Tue Mar 31 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.78774 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46933 * 89.99807 * 6 5 4 8 8 O 1.21280 * 120.00118 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99466 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.08996 * 109.46934 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.46956 * 240.00489 * 11 9 7 14 14 C 1.53000 * 109.46962 * 120.00458 * 11 9 7 15 15 N 1.46897 * 109.47104 * 304.99955 * 14 11 9 16 16 C 1.46896 * 111.00190 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47372 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00035 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00135 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00106 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99918 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00090 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46857 * 120.00133 * 24 22 20 27 27 H 1.48500 * 109.47465 * 239.99991 * 24 22 20 28 28 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 29 29 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 30 30 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 31 31 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 32 32 H 1.08003 * 126.57278 * 359.76766 * 3 2 1 33 33 H 1.08004 * 126.57888 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46947 * 210.00127 * 6 5 4 35 35 H 1.09004 * 109.47169 * 329.99683 * 6 5 4 36 36 H 1.09002 * 109.47011 * 90.00068 * 10 9 7 37 37 H 1.09000 * 109.46562 * 209.99501 * 10 9 7 38 38 H 1.08988 * 109.47387 * 329.99700 * 10 9 7 39 39 H 1.09005 * 109.46575 * 180.02562 * 13 11 9 40 40 H 1.08996 * 109.47154 * 299.99688 * 13 11 9 41 41 H 1.08991 * 109.47735 * 60.00532 * 13 11 9 42 42 H 1.08999 * 109.46850 * 64.99725 * 14 11 9 43 43 H 1.09000 * 109.47296 * 185.00057 * 14 11 9 44 44 H 1.00904 * 111.00207 * 303.95549 * 15 14 11 45 45 H 1.09002 * 109.47372 * 300.00326 * 16 15 14 46 46 H 1.08998 * 109.47342 * 60.00282 * 16 15 14 47 47 H 0.97003 * 120.00064 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00102 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0153 7 6 5.1620 -1.9433 1.4382 8 8 4.5366 -1.4574 2.3567 9 7 6.2065 -2.7570 1.6900 10 6 6.9615 -3.3443 0.5803 11 6 6.5867 -3.0543 3.0732 12 1 5.9151 -2.5322 3.7547 13 6 8.0240 -2.5904 3.3178 14 6 6.4888 -4.5616 3.3163 15 7 5.1402 -5.0275 2.9665 16 6 5.0091 -6.4738 3.1872 17 6 3.6161 -6.9142 2.8177 18 8 2.8114 -6.1028 2.4111 19 7 3.2640 -8.2094 2.9401 20 6 1.9968 -8.6100 2.6036 21 1 1.2806 -7.8877 2.2407 22 6 1.6340 -9.9454 2.7293 23 7 2.5053 -10.8243 3.1713 24 14 -0.0928 -10.4912 2.2713 25 1 -0.8753 -9.3185 1.8050 26 1 -0.0209 -11.5014 1.1851 27 1 -0.7548 -11.0879 3.4591 28 8 2.2923 -1.0895 0.0044 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9665 2.1204 -0.0035 33 1 4.5212 1.2433 0.0083 34 1 4.5123 -2.5646 -0.4973 35 1 5.6057 -1.1601 -0.4968 36 1 7.7803 -2.6793 0.3057 37 1 7.3646 -4.3098 0.8860 38 1 6.3015 -3.4809 -0.2762 39 1 8.3070 -2.8120 4.3469 40 1 8.6953 -3.1128 2.6363 41 1 8.0938 -1.5166 3.1447 42 1 7.2232 -5.0778 2.6980 43 1 6.6852 -4.7737 4.3673 44 1 4.4370 -4.5178 3.4802 45 1 5.7333 -7.0030 2.5678 46 1 5.1954 -6.6996 4.2371 47 1 3.9074 -8.8582 3.2657 48 1 2.2522 -11.7566 3.2587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753687016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:26 Heat of formation + Delta-G solvation = -53.529769 kcal Electronic energy + Delta-G solvation = -29343.377279 eV Core-core repulsion = 25207.290842 eV Total energy + Delta-G solvation = -4136.086438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51839 -39.96463 -38.24763 -36.81075 -34.66034 -33.78530 -33.15929 -33.04366 -31.71374 -31.16055 -29.65461 -27.57321 -26.92495 -25.30141 -24.88400 -23.21164 -21.89855 -21.46587 -20.12670 -19.34557 -18.93947 -17.85073 -17.45529 -16.73891 -16.27059 -16.02000 -15.72072 -15.53367 -15.05305 -14.57071 -14.41290 -14.32279 -13.98658 -13.73738 -13.53740 -13.42234 -13.17029 -13.04690 -12.93285 -12.75969 -12.71751 -12.59779 -12.43043 -12.22044 -12.11432 -11.91930 -11.69284 -11.55890 -11.47838 -11.39841 -11.03893 -10.89589 -10.32521 -10.20207 -9.83357 -9.72084 -9.49506 -8.63349 -8.39633 -8.21072 -8.01768 -7.92915 -6.39725 -3.80160 1.74020 2.59309 2.72769 2.87261 3.17601 3.17869 3.28137 3.36066 3.94118 4.09812 4.31255 4.49975 4.64102 4.85520 4.87846 4.99284 5.05073 5.06000 5.09875 5.12215 5.22830 5.26540 5.28580 5.36517 5.39840 5.41301 5.46401 5.50772 5.55184 5.65819 5.73465 5.80583 5.84844 5.88542 5.97659 5.98758 6.01305 6.21244 6.28797 6.54218 6.59538 7.24398 7.26537 7.40064 7.57674 7.68123 8.09317 8.26184 8.64268 9.20796 9.57108 10.09214 10.78266 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.003073 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.425704 B = 9108.224590 C =11759.102947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.216 4.216 4 C -0.199 4.199 5 C 0.010 3.990 6 C -0.060 4.060 7 C 0.525 3.475 8 O -0.532 6.532 9 N -0.593 5.593 10 C 0.081 3.919 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.157 4.157 14 C 0.047 3.953 15 N -0.663 5.663 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 O -0.163 6.163 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.351 0.649 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 18.755 -5.436 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.236 4.236 4 C -0.218 4.218 5 C -0.041 4.041 6 C -0.099 4.099 7 C 0.312 3.688 8 O -0.408 6.408 9 N -0.326 5.326 10 C -0.063 4.063 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.216 4.216 14 C -0.084 4.084 15 N -0.296 5.296 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 O -0.060 6.060 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.171 0.829 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.260 18.985 -5.855 22.360 hybrid contribution -0.226 -0.874 0.949 1.310 sum 10.034 18.111 -4.906 21.278 Atomic orbital electron populations 1.20307 0.85301 1.04201 1.03321 1.22421 0.94024 0.84153 1.05386 1.21463 0.92664 0.99130 1.10301 1.21406 0.98079 0.93560 1.08784 1.21449 0.82837 0.93675 1.06101 1.20117 0.93347 1.00212 0.96250 1.20205 0.79470 0.78365 0.90731 1.90715 1.51751 1.51928 1.46365 1.47484 1.31275 1.47317 1.06553 1.21732 0.96103 0.98847 0.89575 1.21081 0.96589 0.95164 0.83744 0.88256 1.22074 0.95577 1.01691 1.02209 1.22358 0.92534 0.94686 0.98786 1.60014 1.03263 1.03258 1.63061 1.21662 0.97628 0.89544 0.99272 1.19829 0.88990 0.83495 0.85047 1.90553 1.52650 1.52447 1.50594 1.41868 1.13589 1.06818 1.58008 1.19755 0.89122 0.93379 1.40398 0.87921 1.25251 0.99762 0.95600 0.97388 1.69622 1.35018 1.03206 1.46654 0.85811 0.81844 0.78722 0.78050 1.19210 1.20752 1.20775 1.84004 1.16127 1.34931 1.70893 0.90230 0.90244 0.89520 0.83759 0.83878 0.86725 0.86362 0.93015 0.90650 0.90952 0.91410 0.92138 0.92125 0.90815 0.94462 0.82914 0.89803 0.94047 0.77535 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.42 36.00 0.38 -0.37 16 2 C -0.01 -0.13 7.32 -35.63 -0.26 -0.39 16 3 C -0.22 -2.75 10.81 -39.71 -0.43 -3.18 16 4 C -0.20 -2.60 10.81 -39.70 -0.43 -3.03 16 5 C 0.01 0.15 5.81 -35.62 -0.21 -0.06 16 6 C -0.06 -0.70 4.79 -29.03 -0.14 -0.84 16 7 C 0.52 7.56 7.67 -10.99 -0.08 7.48 16 8 O -0.53 -9.93 15.36 5.56 0.09 -9.84 16 9 N -0.59 -6.95 2.48 -173.94 -0.43 -7.38 16 10 C 0.08 0.68 9.30 59.85 0.56 1.23 16 11 C 0.14 1.58 2.88 -67.93 -0.20 1.38 16 12 H 0.10 1.38 6.90 -51.93 -0.36 1.02 16 13 C -0.16 -1.28 9.19 37.16 0.34 -0.94 16 14 C 0.05 0.56 4.93 -3.83 -0.02 0.55 16 15 N -0.66 -11.07 5.85 -115.06 -0.67 -11.74 16 16 C 0.05 0.93 6.17 -4.98 -0.03 0.89 16 17 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 18 O -0.58 -16.35 15.78 5.54 0.09 -16.26 16 19 N -0.57 -14.63 5.29 -10.96 -0.06 -14.68 16 20 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 24 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 O -0.16 -2.72 10.65 5.72 0.06 -2.66 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 33 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.11 1.29 7.40 -51.93 -0.38 0.91 16 35 H 0.12 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.63 6.53 -51.93 -0.34 0.29 16 38 H 0.07 0.58 6.44 -51.94 -0.33 0.24 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 43 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.35 6.67 8.43 -39.29 -0.33 6.34 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -36.73 403.55 -7.40 -44.13 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -7.41 Total: 14.91 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.85 Total: 5.22 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.44 Total: -57.96 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.23 Total: -28.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.73 -7.40 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753687016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.401 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds