Wall clock time and date at job start Tue Mar 31 2020 20:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.78774 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46933 * 89.99807 * 6 5 4 8 8 O 1.21280 * 120.00118 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99466 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.08996 * 109.46934 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.46956 * 240.00489 * 11 9 7 14 14 C 1.53000 * 109.46962 * 120.00458 * 11 9 7 15 15 N 1.46897 * 109.47104 * 304.99955 * 14 11 9 16 16 C 1.46896 * 111.00190 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47372 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00035 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00135 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00106 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99918 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00090 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46857 * 120.00133 * 24 22 20 27 27 H 1.48500 * 109.47465 * 239.99991 * 24 22 20 28 28 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 29 29 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 30 30 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 31 31 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 32 32 H 1.08003 * 126.57278 * 359.76766 * 3 2 1 33 33 H 1.08004 * 126.57888 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46947 * 210.00127 * 6 5 4 35 35 H 1.09004 * 109.47169 * 329.99683 * 6 5 4 36 36 H 1.09002 * 109.47011 * 90.00068 * 10 9 7 37 37 H 1.09000 * 109.46562 * 209.99501 * 10 9 7 38 38 H 1.08988 * 109.47387 * 329.99700 * 10 9 7 39 39 H 1.09005 * 109.46575 * 180.02562 * 13 11 9 40 40 H 1.08996 * 109.47154 * 299.99688 * 13 11 9 41 41 H 1.08991 * 109.47735 * 60.00532 * 13 11 9 42 42 H 1.08999 * 109.46850 * 64.99725 * 14 11 9 43 43 H 1.09000 * 109.47296 * 185.00057 * 14 11 9 44 44 H 1.00904 * 111.00207 * 303.95549 * 15 14 11 45 45 H 1.09002 * 109.47372 * 300.00326 * 16 15 14 46 46 H 1.08998 * 109.47342 * 60.00282 * 16 15 14 47 47 H 0.97003 * 120.00064 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00102 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0153 7 6 5.1620 -1.9433 1.4382 8 8 4.5366 -1.4574 2.3567 9 7 6.2065 -2.7570 1.6900 10 6 6.9615 -3.3443 0.5803 11 6 6.5867 -3.0543 3.0732 12 1 5.9151 -2.5322 3.7547 13 6 8.0240 -2.5904 3.3178 14 6 6.4888 -4.5616 3.3163 15 7 5.1402 -5.0275 2.9665 16 6 5.0091 -6.4738 3.1872 17 6 3.6161 -6.9142 2.8177 18 8 2.8114 -6.1028 2.4111 19 7 3.2640 -8.2094 2.9401 20 6 1.9968 -8.6100 2.6036 21 1 1.2806 -7.8877 2.2407 22 6 1.6340 -9.9454 2.7293 23 7 2.5053 -10.8243 3.1713 24 14 -0.0928 -10.4912 2.2713 25 1 -0.8753 -9.3185 1.8050 26 1 -0.0209 -11.5014 1.1851 27 1 -0.7548 -11.0879 3.4591 28 8 2.2923 -1.0895 0.0044 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9665 2.1204 -0.0035 33 1 4.5212 1.2433 0.0083 34 1 4.5123 -2.5646 -0.4973 35 1 5.6057 -1.1601 -0.4968 36 1 7.7803 -2.6793 0.3057 37 1 7.3646 -4.3098 0.8860 38 1 6.3015 -3.4809 -0.2762 39 1 8.3070 -2.8120 4.3469 40 1 8.6953 -3.1128 2.6363 41 1 8.0938 -1.5166 3.1447 42 1 7.2232 -5.0778 2.6980 43 1 6.6852 -4.7737 4.3673 44 1 4.4370 -4.5178 3.4802 45 1 5.7333 -7.0030 2.5678 46 1 5.1954 -6.6996 4.2371 47 1 3.9074 -8.8582 3.2657 48 1 2.2522 -11.7566 3.2587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753687016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:25 Heat of formation + Delta-G solvation = -80.633648 kcal Electronic energy + Delta-G solvation = -29344.552592 eV Core-core repulsion = 25207.290842 eV Total energy + Delta-G solvation = -4137.261750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.54930 -40.99003 -40.13822 -37.95970 -36.17572 -35.55782 -34.21044 -34.02125 -33.29600 -32.60718 -30.52665 -28.97317 -27.69900 -26.71964 -26.11601 -24.58630 -22.90492 -22.45527 -21.22775 -21.01421 -20.09228 -19.85058 -18.46358 -17.97551 -17.57288 -17.22699 -16.90038 -16.71333 -16.43265 -16.27805 -15.97502 -15.36630 -15.25194 -15.13069 -14.92197 -14.37573 -14.22811 -14.07175 -13.88639 -13.76376 -13.72292 -13.58095 -13.54313 -13.32961 -13.16430 -13.07670 -12.95774 -12.83118 -12.76474 -12.54480 -12.45915 -12.40532 -12.14073 -11.77598 -11.54153 -10.91968 -10.76286 -10.38813 -10.03806 -9.52871 -9.33111 -9.19919 -8.49438 -5.98099 0.71432 1.34102 1.39275 1.53694 1.61274 1.69459 1.95765 2.03040 2.25818 2.28343 2.90296 3.17586 3.48228 3.55934 3.72188 3.93997 3.98554 4.13258 4.16344 4.23311 4.30981 4.34819 4.35817 4.42056 4.49315 4.54921 4.55543 4.64861 4.66703 4.73387 4.81329 4.83276 4.83947 4.89976 5.04619 5.05932 5.13066 5.28105 5.30253 5.38382 5.66052 5.68223 5.87119 6.09469 6.25352 6.26890 6.46223 6.58183 7.10698 7.24594 7.53711 8.10382 8.68236 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.003073 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.425704 B = 9108.224590 C =11759.102947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.221 4.221 4 C -0.202 4.202 5 C -0.019 4.019 6 C -0.054 4.054 7 C 0.514 3.486 8 O -0.588 6.588 9 N -0.589 5.589 10 C 0.072 3.928 11 C 0.136 3.864 12 H 0.066 0.934 13 C -0.145 4.145 14 C 0.050 3.950 15 N -0.677 5.677 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.277 1.277 26 H -0.268 1.268 27 H -0.269 1.269 28 O -0.203 6.203 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.114 0.886 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.333 0.667 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.192 18.719 -6.064 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.240 4.240 4 C -0.221 4.221 5 C -0.069 4.069 6 C -0.093 4.093 7 C 0.303 3.697 8 O -0.469 6.469 9 N -0.320 5.320 10 C -0.070 4.070 11 C 0.032 3.968 12 H 0.084 0.916 13 C -0.203 4.203 14 C -0.079 4.079 15 N -0.308 5.308 16 C -0.064 4.064 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.193 1.193 27 H -0.194 1.194 28 O -0.101 6.101 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.190 0.810 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.179 0.821 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.150 0.850 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.399 18.907 -6.492 23.523 hybrid contribution -0.819 -0.848 1.159 1.653 sum 11.580 18.059 -5.333 22.106 Atomic orbital electron populations 1.20468 0.83231 1.04650 1.04665 1.23216 0.95576 0.84044 1.05670 1.21880 0.92483 1.00162 1.09430 1.21810 0.99207 0.93366 1.07687 1.22080 0.82826 0.95033 1.06974 1.20258 0.93845 1.00304 0.94918 1.20722 0.79481 0.78307 0.91224 1.90680 1.53771 1.54380 1.48041 1.47635 1.30560 1.46194 1.07626 1.22024 0.96735 0.99738 0.88486 1.21124 0.98047 0.94464 0.83189 0.91572 1.21986 0.93168 1.01656 1.03528 1.22493 0.90221 0.95058 1.00178 1.60045 1.05100 1.02261 1.63408 1.21532 0.93471 0.90558 1.00881 1.20972 0.91107 0.82421 0.83170 1.90526 1.54866 1.53507 1.52323 1.41918 1.13011 1.07675 1.58391 1.19662 0.90216 0.93761 1.42755 0.90794 1.26012 1.03473 0.95011 0.96589 1.69670 1.36435 1.03670 1.46224 0.84899 0.77160 0.78041 0.78401 1.20135 1.19260 1.19446 1.83978 1.17498 1.36751 1.71855 0.88377 0.91618 0.87148 0.81024 0.81484 0.86750 0.82106 0.89649 0.90105 0.90692 0.90240 0.90013 0.92354 0.88435 0.92986 0.84995 0.87145 0.91855 0.76896 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.42 71.23 0.74 -0.75 16 2 C -0.04 -1.01 7.32 24.83 0.18 -0.83 16 3 C -0.22 -5.55 10.81 22.19 0.24 -5.31 16 4 C -0.20 -5.23 10.81 22.19 0.24 -4.99 16 5 C -0.02 -0.58 5.81 24.84 0.14 -0.43 16 6 C -0.05 -1.27 4.79 29.10 0.14 -1.13 16 7 C 0.51 15.08 7.67 87.65 0.67 15.75 16 8 O -0.59 -23.26 15.36 -3.03 -0.05 -23.31 16 9 N -0.59 -13.19 2.48 -822.61 -2.04 -15.24 16 10 C 0.07 1.01 9.30 127.77 1.19 2.20 16 11 C 0.14 2.96 2.88 44.99 0.13 3.09 16 12 H 0.07 1.91 6.90 -2.39 -0.02 1.89 16 13 C -0.15 -1.98 9.19 71.98 0.66 -1.32 16 14 C 0.05 1.10 4.93 86.30 0.43 1.53 16 15 N -0.68 -22.36 5.85 -517.95 -3.03 -25.39 16 16 C 0.07 2.36 6.17 85.56 0.53 2.89 16 17 C 0.44 21.55 7.82 87.66 0.69 22.23 16 18 O -0.63 -36.91 15.78 -3.08 -0.05 -36.96 16 19 N -0.57 -30.15 5.29 -306.98 -1.62 -31.77 16 20 C -0.33 -19.58 9.68 84.04 0.81 -18.76 16 21 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 24 Si 0.99 43.89 29.55 68.60 2.03 45.91 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 O -0.20 -7.17 10.65 -2.45 -0.03 -7.20 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16 35 H 0.16 2.15 8.11 -2.39 -0.02 2.13 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.08 6.53 -2.39 -0.02 1.06 16 38 H 0.07 1.04 6.44 -2.39 -0.02 1.02 16 39 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.72 6.88 -2.39 -0.02 1.70 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.33 13.12 8.43 -89.69 -0.76 12.37 16 45 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.40 19.63 7.90 -92.71 -0.73 18.89 16 48 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -84.88 403.55 2.25 -82.63 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -0.50 Total: 47.07 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.26 Total: 14.04 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.41 Total: -122.18 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -0.12 Total: -67.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -84.88 2.25 -82.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753687016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.994 kcal (2) G-P(sol) polarization free energy of solvation -84.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds