Wall clock time and date at job start Tue Mar 31 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34515 * 125.78590 * 2 1 4 4 C 1.41386 * 106.83707 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84245 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.79205 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47266 * 89.99904 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99864 * 359.72839 * 9 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 9 7 6 12 12 H 1.08998 * 109.47712 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47150 * 120.00274 * 11 9 7 14 14 C 1.53010 * 109.47200 * 239.99971 * 11 9 7 15 15 N 1.46903 * 109.46624 * 54.99912 * 14 11 9 16 16 C 1.46906 * 110.99528 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.46930 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00085 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99864 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00046 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99985 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00439 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47028 * 59.99228 * 24 22 20 26 26 H 1.48497 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46626 * 299.99499 * 24 22 20 28 28 O 1.34299 * 108.42195 * 0.26609 * 5 4 3 29 29 H 1.09000 * 109.46920 * 89.99646 * 1 2 3 30 30 H 1.08996 * 109.46796 * 209.99682 * 1 2 3 31 31 H 1.08998 * 109.47115 * 330.00201 * 1 2 3 32 32 H 1.07995 * 126.58504 * 0.05875 * 3 2 1 33 33 H 1.08005 * 126.57582 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47205 * 329.99997 * 6 5 4 35 35 H 1.08997 * 109.47395 * 210.00490 * 6 5 4 36 36 H 1.09000 * 109.47297 * 90.00011 * 10 9 7 37 37 H 1.09002 * 109.47192 * 209.99937 * 10 9 7 38 38 H 1.08996 * 109.47342 * 329.99648 * 10 9 7 39 39 H 1.08996 * 109.47135 * 179.97438 * 13 11 9 40 40 H 1.08998 * 109.46853 * 299.99528 * 13 11 9 41 41 H 1.08998 * 109.46756 * 59.99483 * 13 11 9 42 42 H 1.08990 * 109.47041 * 175.00191 * 14 11 9 43 43 H 1.08999 * 109.46790 * 295.00767 * 14 11 9 44 44 H 1.00904 * 110.99894 * 56.05437 * 15 14 11 45 45 H 1.09005 * 109.47077 * 300.00372 * 16 15 14 46 46 H 1.08999 * 109.47004 * 59.99755 * 16 15 14 47 47 H 0.97002 * 119.99960 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 6 5.1667 -1.9473 1.4188 8 8 4.5443 -1.4642 2.3409 9 7 6.2126 -2.7610 1.6648 10 6 6.9607 -3.3493 0.5510 11 6 6.5973 -3.0623 3.0458 12 1 5.9280 -2.5423 3.7312 13 6 6.5013 -4.5706 3.2845 14 6 8.0351 -2.5982 3.2877 15 7 8.1546 -1.1751 2.9434 16 6 9.5251 -0.6937 3.1630 17 6 9.6086 0.7667 2.8006 18 8 8.6236 1.3491 2.3984 19 7 10.7779 1.4257 2.9233 20 6 10.8540 2.7540 2.5931 21 1 9.9771 3.2725 2.2342 22 6 12.0596 3.4332 2.7191 23 7 13.1267 2.8025 3.1553 24 14 12.1632 5.2435 2.2699 25 1 11.2239 6.0189 3.1194 26 1 13.5484 5.7303 2.4924 27 1 11.7995 5.4204 0.8409 28 8 2.2925 -1.0894 -0.0074 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9666 2.1204 0.0009 33 1 4.5212 1.2434 -0.0004 34 1 5.6041 -1.1583 -0.5152 35 1 4.5108 -2.5628 -0.5164 36 1 7.7778 -2.6846 0.2708 37 1 7.3655 -4.3147 0.8549 38 1 6.2953 -3.4865 -0.3013 39 1 6.7880 -4.7948 4.3119 40 1 5.4771 -4.9012 3.1123 41 1 7.1710 -5.0901 2.5992 42 1 8.2912 -2.7409 4.3374 43 1 8.7144 -3.1807 2.6654 44 1 7.4890 -0.6207 3.4610 45 1 9.7920 -0.8233 4.2119 46 1 10.2144 -1.2632 2.5397 47 1 11.5657 0.9598 3.2446 48 1 13.9684 3.2765 3.2429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753687018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:29 Heat of formation + Delta-G solvation = -53.623253 kcal Electronic energy + Delta-G solvation = -29254.237739 eV Core-core repulsion = 25118.147247 eV Total energy + Delta-G solvation = -4136.090491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.52077 -39.95604 -38.25001 -36.79981 -34.66866 -33.79030 -33.13548 -33.07629 -31.71669 -31.16866 -29.68400 -27.58636 -26.92040 -25.31041 -24.87777 -23.20170 -21.88562 -21.47338 -20.09480 -19.34418 -18.93603 -17.85556 -17.45406 -16.72945 -16.32083 -16.01919 -15.66284 -15.56723 -15.08904 -14.58879 -14.42976 -14.26206 -13.91058 -13.80545 -13.53620 -13.45675 -13.23896 -13.13907 -12.98006 -12.75752 -12.70097 -12.46321 -12.36383 -12.30535 -12.10579 -11.93131 -11.70485 -11.58723 -11.47617 -11.40390 -11.00356 -10.88541 -10.43047 -10.19776 -9.80705 -9.69816 -9.48094 -8.62533 -8.39225 -8.20425 -8.01951 -7.93556 -6.40044 -3.80712 1.72228 2.62484 2.74130 2.87903 3.15409 3.21421 3.26661 3.31467 3.93478 4.09547 4.30837 4.50842 4.62624 4.83913 4.86893 4.96077 5.04052 5.05414 5.12287 5.13202 5.21304 5.22992 5.27781 5.27889 5.41344 5.45843 5.47029 5.52560 5.55236 5.57674 5.77264 5.80537 5.89064 5.92845 5.98756 6.01492 6.09912 6.19999 6.28253 6.54896 6.63873 7.23321 7.24391 7.40827 7.56627 7.68375 8.08166 8.27143 8.63597 9.19896 9.56394 10.08423 10.77730 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.002819 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.025068 B = 9930.911459 C =12265.733709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.021 4.021 3 C -0.208 4.208 4 C -0.185 4.185 5 C 0.002 3.998 6 C -0.056 4.056 7 C 0.524 3.476 8 O -0.532 6.532 9 N -0.593 5.593 10 C 0.076 3.924 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.159 4.159 14 C 0.048 3.952 15 N -0.663 5.663 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 O -0.174 6.174 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.351 0.649 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -15.850 -5.483 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.227 4.227 4 C -0.205 4.205 5 C -0.048 4.048 6 C -0.096 4.096 7 C 0.312 3.688 8 O -0.408 6.408 9 N -0.326 5.326 10 C -0.067 4.067 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.217 4.217 14 C -0.082 4.082 15 N -0.295 5.295 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.464 6.464 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.072 6.072 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.171 0.829 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.539 -15.529 -5.898 23.441 hybrid contribution 1.092 0.859 0.954 1.685 sum -15.447 -14.671 -4.944 21.869 Atomic orbital electron populations 1.20252 0.85357 1.03891 1.03125 1.22328 0.93787 0.84239 1.06711 1.21554 0.92773 0.99294 1.09075 1.21617 0.98430 0.93839 1.06564 1.21420 0.82368 0.93958 1.07076 1.20107 0.93732 0.99501 0.96216 1.20210 0.79796 0.78044 0.90772 1.90714 1.53272 1.50770 1.46044 1.47471 1.30840 1.47792 1.06543 1.21791 0.97143 0.98892 0.88862 1.21077 0.96147 0.95514 0.83827 0.88258 1.22095 1.02367 0.95014 1.02245 1.22351 0.96213 0.90878 0.98781 1.60021 1.05015 1.01546 1.62966 1.21664 0.91212 0.95935 0.99294 1.19823 0.84577 0.87915 0.85066 1.90539 1.36144 1.68902 1.50798 1.41857 1.09599 1.10603 1.58129 1.19647 0.97039 0.85264 1.40851 0.88031 1.25249 0.94910 1.00444 0.97341 1.69599 1.00820 1.37494 1.46554 0.85929 0.77086 0.82056 0.79217 1.19918 1.20990 1.19882 1.83876 1.16282 1.35121 1.71883 0.90398 0.90785 0.89485 0.83622 0.83185 0.85615 0.87639 0.91490 0.91170 0.91455 0.91343 0.92099 0.92076 0.94543 0.90866 0.82940 0.94079 0.89801 0.77521 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 2 C -0.02 -0.26 7.32 -35.62 -0.26 -0.52 16 3 C -0.21 -2.81 10.81 -39.70 -0.43 -3.24 16 4 C -0.19 -2.80 10.81 -39.70 -0.43 -3.23 16 5 C 0.00 0.03 5.81 -35.63 -0.21 -0.18 16 6 C -0.06 -0.66 4.79 -29.04 -0.14 -0.80 16 7 C 0.52 7.56 7.67 -10.98 -0.08 7.47 16 8 O -0.53 -9.95 15.36 5.56 0.09 -9.86 16 9 N -0.59 -6.95 2.48 -173.94 -0.43 -7.38 16 10 C 0.08 0.64 9.41 59.84 0.56 1.20 16 11 C 0.14 1.58 2.88 -67.93 -0.20 1.38 16 12 H 0.10 1.38 6.90 -51.93 -0.36 1.02 16 13 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 14 C 0.05 0.58 4.99 -3.82 -0.02 0.56 16 15 N -0.66 -10.89 5.85 -115.05 -0.67 -11.56 16 16 C 0.05 0.92 6.17 -4.97 -0.03 0.88 16 17 C 0.44 10.55 7.82 -10.98 -0.09 10.47 16 18 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 19 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 O -0.17 -2.54 10.65 5.72 0.06 -2.48 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.15 2.27 8.06 -52.48 -0.42 1.84 16 34 H 0.13 1.31 8.11 -51.93 -0.42 0.89 16 35 H 0.11 0.90 7.39 -51.93 -0.38 0.52 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.46 6.41 -51.93 -0.33 0.13 16 38 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.42 6.65 -51.93 -0.35 0.08 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 44 H 0.35 6.55 8.43 -39.29 -0.33 6.22 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -36.01 403.52 -7.39 -43.40 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.40 Total: 15.30 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.84 Total: 4.76 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.44 Total: -57.50 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: 0.23 Total: -28.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.01 -7.39 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753687018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.220 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds