Wall clock time and date at job start Tue Mar 31 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34515 * 125.78590 * 2 1 4 4 C 1.41386 * 106.83707 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.84245 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.79205 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47266 * 89.99904 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99864 * 359.72839 * 9 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 9 7 6 12 12 H 1.08998 * 109.47712 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47150 * 120.00274 * 11 9 7 14 14 C 1.53010 * 109.47200 * 239.99971 * 11 9 7 15 15 N 1.46903 * 109.46624 * 54.99912 * 14 11 9 16 16 C 1.46906 * 110.99528 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.46930 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00085 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99864 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00046 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99985 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00439 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47028 * 59.99228 * 24 22 20 26 26 H 1.48497 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46626 * 299.99499 * 24 22 20 28 28 O 1.34299 * 108.42195 * 0.26609 * 5 4 3 29 29 H 1.09000 * 109.46920 * 89.99646 * 1 2 3 30 30 H 1.08996 * 109.46796 * 209.99682 * 1 2 3 31 31 H 1.08998 * 109.47115 * 330.00201 * 1 2 3 32 32 H 1.07995 * 126.58504 * 0.05875 * 3 2 1 33 33 H 1.08005 * 126.57582 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47205 * 329.99997 * 6 5 4 35 35 H 1.08997 * 109.47395 * 210.00490 * 6 5 4 36 36 H 1.09000 * 109.47297 * 90.00011 * 10 9 7 37 37 H 1.09002 * 109.47192 * 209.99937 * 10 9 7 38 38 H 1.08996 * 109.47342 * 329.99648 * 10 9 7 39 39 H 1.08996 * 109.47135 * 179.97438 * 13 11 9 40 40 H 1.08998 * 109.46853 * 299.99528 * 13 11 9 41 41 H 1.08998 * 109.46756 * 59.99483 * 13 11 9 42 42 H 1.08990 * 109.47041 * 175.00191 * 14 11 9 43 43 H 1.08999 * 109.46790 * 295.00767 * 14 11 9 44 44 H 1.00904 * 110.99894 * 56.05437 * 15 14 11 45 45 H 1.09005 * 109.47077 * 300.00372 * 16 15 14 46 46 H 1.08999 * 109.47004 * 59.99755 * 16 15 14 47 47 H 0.97002 * 119.99960 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 6 5.1667 -1.9473 1.4188 8 8 4.5443 -1.4642 2.3409 9 7 6.2126 -2.7610 1.6648 10 6 6.9607 -3.3493 0.5510 11 6 6.5973 -3.0623 3.0458 12 1 5.9280 -2.5423 3.7312 13 6 6.5013 -4.5706 3.2845 14 6 8.0351 -2.5982 3.2877 15 7 8.1546 -1.1751 2.9434 16 6 9.5251 -0.6937 3.1630 17 6 9.6086 0.7667 2.8006 18 8 8.6236 1.3491 2.3984 19 7 10.7779 1.4257 2.9233 20 6 10.8540 2.7540 2.5931 21 1 9.9771 3.2725 2.2342 22 6 12.0596 3.4332 2.7191 23 7 13.1267 2.8025 3.1553 24 14 12.1632 5.2435 2.2699 25 1 11.2239 6.0189 3.1194 26 1 13.5484 5.7303 2.4924 27 1 11.7995 5.4204 0.8409 28 8 2.2925 -1.0894 -0.0074 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9666 2.1204 0.0009 33 1 4.5212 1.2434 -0.0004 34 1 5.6041 -1.1583 -0.5152 35 1 4.5108 -2.5628 -0.5164 36 1 7.7778 -2.6846 0.2708 37 1 7.3655 -4.3147 0.8549 38 1 6.2953 -3.4865 -0.3013 39 1 6.7880 -4.7948 4.3119 40 1 5.4771 -4.9012 3.1123 41 1 7.1710 -5.0901 2.5992 42 1 8.2912 -2.7409 4.3374 43 1 8.7144 -3.1807 2.6654 44 1 7.4890 -0.6207 3.4610 45 1 9.7920 -0.8233 4.2119 46 1 10.2144 -1.2632 2.5397 47 1 11.5657 0.9598 3.2446 48 1 13.9684 3.2765 3.2429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753687018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:28 Heat of formation + Delta-G solvation = -79.918515 kcal Electronic energy + Delta-G solvation = -29255.377987 eV Core-core repulsion = 25118.147247 eV Total energy + Delta-G solvation = -4137.230739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56665 -40.99285 -40.12256 -37.95036 -36.16978 -35.55476 -34.21664 -34.04061 -33.28431 -32.60869 -30.53373 -28.96487 -27.71704 -26.70023 -26.12054 -24.56555 -22.94438 -22.46348 -21.21508 -21.00809 -20.09171 -19.84208 -18.46680 -17.96058 -17.59684 -17.22314 -16.89750 -16.67365 -16.45145 -16.29834 -15.96516 -15.33719 -15.25004 -15.17736 -14.71856 -14.57693 -14.23384 -14.09654 -13.92583 -13.80220 -13.71439 -13.56800 -13.52298 -13.25721 -13.16760 -13.07589 -12.90954 -12.86060 -12.75824 -12.56205 -12.46673 -12.42204 -12.13593 -11.75781 -11.52136 -10.94167 -10.79514 -10.37111 -10.02980 -9.54506 -9.31185 -9.21653 -8.48072 -5.96774 0.68485 1.37984 1.39750 1.50684 1.58009 1.67501 1.90078 2.04446 2.22872 2.28058 2.91306 3.18970 3.49416 3.55561 3.70700 3.93406 3.96531 4.08938 4.15875 4.22267 4.32589 4.35065 4.36609 4.43061 4.50059 4.55040 4.57949 4.66266 4.71242 4.72566 4.78019 4.84206 4.85235 4.91038 5.05270 5.07317 5.11660 5.27071 5.30530 5.38917 5.60147 5.66582 5.88165 6.10440 6.18005 6.28787 6.45739 6.59288 7.11506 7.23860 7.54996 8.11340 8.69081 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.002819 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.025068 B = 9930.911459 C =12265.733709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.022 4.022 3 C -0.230 4.230 4 C -0.217 4.217 5 C -0.009 4.009 6 C -0.052 4.052 7 C 0.514 3.486 8 O -0.588 6.588 9 N -0.588 5.588 10 C 0.069 3.931 11 C 0.135 3.865 12 H 0.066 0.934 13 C -0.147 4.147 14 C 0.052 3.948 15 N -0.675 5.675 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.271 1.271 28 O -0.185 6.185 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.333 0.667 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 -17.827 -6.123 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.249 4.249 4 C -0.236 4.236 5 C -0.059 4.059 6 C -0.091 4.091 7 C 0.303 3.697 8 O -0.469 6.469 9 N -0.320 5.320 10 C -0.073 4.073 11 C 0.031 3.969 12 H 0.085 0.915 13 C -0.206 4.206 14 C -0.078 4.078 15 N -0.307 5.307 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.197 1.197 28 O -0.083 6.083 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.180 0.820 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.128 0.872 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.083 -17.571 -6.549 24.704 hybrid contribution 0.957 1.438 1.167 2.085 sum -15.126 -16.133 -5.382 22.761 Atomic orbital electron populations 1.20478 0.81984 1.05075 1.04917 1.23201 0.95659 0.83482 1.04808 1.21843 0.92332 1.00623 1.10085 1.21770 0.98976 0.94674 1.08167 1.21849 0.83150 0.94271 1.06660 1.20216 0.93047 1.00769 0.95052 1.20702 0.80051 0.77801 0.91193 1.90682 1.55376 1.53096 1.47709 1.47619 1.29989 1.46691 1.07661 1.22057 0.97079 0.99477 0.88645 1.21127 0.94981 0.97496 0.83254 0.91549 1.22014 1.02777 0.92122 1.03651 1.22471 0.96996 0.88136 1.00147 1.60050 1.03706 1.03638 1.63275 1.21530 0.92655 0.91402 1.00860 1.20952 0.83221 0.90312 0.83162 1.90513 1.37500 1.70673 1.52370 1.41915 1.10425 1.10080 1.58597 1.19589 0.96921 0.86863 1.43043 0.90672 1.26009 0.94157 1.04356 0.96609 1.69653 1.01142 1.38953 1.46240 0.85026 0.77702 0.77017 0.78816 1.19944 1.19231 1.19663 1.83881 1.16449 1.35948 1.72007 0.88156 0.90000 0.87848 0.82009 0.84464 0.84611 0.84012 0.92658 0.88512 0.88982 0.90114 0.92498 0.89839 0.93078 0.88564 0.84937 0.91967 0.87214 0.76927 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.42 71.24 0.74 -0.27 16 2 C -0.02 -0.55 7.32 24.83 0.18 -0.37 16 3 C -0.23 -6.46 10.81 22.19 0.24 -6.22 16 4 C -0.22 -6.99 10.81 22.19 0.24 -6.75 16 5 C -0.01 -0.28 5.81 24.83 0.14 -0.13 16 6 C -0.05 -1.21 4.79 29.10 0.14 -1.07 16 7 C 0.51 15.07 7.67 87.66 0.67 15.74 16 8 O -0.59 -23.26 15.36 -3.03 -0.05 -23.30 16 9 N -0.59 -13.17 2.48 -822.59 -2.04 -15.22 16 10 C 0.07 0.97 9.41 127.77 1.20 2.17 16 11 C 0.14 2.95 2.88 45.00 0.13 3.08 16 12 H 0.07 1.91 6.90 -2.39 -0.02 1.90 16 13 C -0.15 -2.03 9.17 71.98 0.66 -1.37 16 14 C 0.05 1.14 4.99 86.31 0.43 1.57 16 15 N -0.68 -21.89 5.85 -517.90 -3.03 -24.92 16 16 C 0.07 2.32 6.17 85.56 0.53 2.85 16 17 C 0.44 21.24 7.82 87.66 0.69 21.92 16 18 O -0.62 -36.02 15.78 -3.07 -0.05 -36.06 16 19 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 20 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 24 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 O -0.19 -5.45 10.65 -2.46 -0.03 -5.48 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.14 2.83 8.11 -2.38 -0.02 2.81 16 35 H 0.14 2.15 7.39 -2.39 -0.02 2.13 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.86 6.41 -2.39 -0.02 0.84 16 38 H 0.09 0.84 6.44 -2.39 -0.02 0.83 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.79 6.65 -2.39 -0.02 0.78 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.70 7.84 -2.39 -0.02 1.68 16 44 H 0.33 12.87 8.43 -89.69 -0.76 12.11 16 45 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -82.78 403.52 2.27 -80.51 By element: Atomic # 1 Polarization: 47.99 SS G_CDS: -0.50 Total: 47.49 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.28 Total: 12.42 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -6.41 Total: -121.23 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -0.12 Total: -64.85 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -82.78 2.27 -80.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753687018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.593 kcal (2) G-P(sol) polarization free energy of solvation -82.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds