Wall clock time and date at job start Tue Mar 31 2020 20:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00177 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 12 12 C 1.53001 * 109.47107 * 89.99639 * 11 9 7 13 13 C 1.53005 * 109.47345 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.47293 * 179.97438 * 13 12 11 15 15 C 1.46904 * 110.99869 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46878 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00391 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99614 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99769 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00082 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00228 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99522 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47030 * 59.99917 * 23 21 19 25 25 H 1.48503 * 109.47263 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47188 * 300.00062 * 23 21 19 27 27 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 28 28 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 29 29 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 30 30 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 31 31 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 32 32 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 34 34 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 35 35 H 1.09004 * 109.47297 * 90.00354 * 10 9 7 36 36 H 1.09005 * 109.47276 * 209.99824 * 10 9 7 37 37 H 1.09001 * 109.47304 * 330.00461 * 10 9 7 38 38 H 1.08995 * 109.47287 * 209.99769 * 11 9 7 39 39 H 1.09003 * 109.47372 * 330.00403 * 11 9 7 40 40 H 1.08999 * 109.47603 * 300.00376 * 12 11 9 41 41 H 1.09002 * 109.47097 * 60.00361 * 12 11 9 42 42 H 1.08999 * 109.47271 * 300.00817 * 13 12 11 43 43 H 1.09002 * 109.46534 * 60.00254 * 13 12 11 44 44 H 1.00900 * 110.99871 * 56.05266 * 14 13 12 45 45 H 1.09007 * 109.46607 * 299.99997 * 15 14 13 46 46 H 1.08999 * 109.47396 * 59.99553 * 15 14 13 47 47 H 0.96995 * 120.00311 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99698 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.9616 -3.3435 0.5835 11 6 6.5845 -3.0534 3.0759 12 6 5.8309 -4.2955 3.5555 13 6 6.2272 -4.6064 5.0003 14 7 5.5032 -5.7987 5.4609 15 6 5.8591 -6.1275 6.8478 16 6 5.0990 -7.3534 7.2841 17 8 4.3356 -7.8992 6.5157 18 7 5.2676 -7.8434 8.5284 19 6 4.5758 -8.9583 8.9256 20 1 3.8960 -9.4443 8.2413 21 6 4.7491 -9.4631 10.2085 22 7 5.5766 -8.8721 11.0408 23 14 3.8070 -10.9827 10.7494 24 1 4.1569 -12.1230 9.8649 25 1 4.1672 -11.3155 12.1512 26 1 2.3483 -10.7180 10.6621 27 8 2.2923 -1.0895 0.0044 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1203 -0.0045 32 1 4.5212 1.2433 0.0076 33 1 4.5127 -2.5646 -0.4964 34 1 5.6061 -1.1601 -0.4949 35 1 7.7801 -2.6780 0.3090 36 1 7.3652 -4.3086 0.8898 37 1 6.3021 -3.4808 -0.2735 38 1 7.6577 -3.2371 3.1272 39 1 6.3301 -2.2059 3.7124 40 1 4.7578 -4.1119 3.5042 41 1 6.0853 -5.1431 2.9190 42 1 7.3004 -4.7902 5.0512 43 1 5.9732 -3.7589 5.6369 44 1 5.6712 -6.5828 4.8486 45 1 6.9297 -6.3223 6.9117 46 1 5.6027 -5.2903 7.4970 47 1 5.8778 -7.4067 9.1430 48 1 5.6979 -9.2247 11.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754375119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:29 Heat of formation + Delta-G solvation = -58.783060 kcal Electronic energy + Delta-G solvation = -27641.130772 eV Core-core repulsion = 23504.816534 eV Total energy + Delta-G solvation = -4136.314237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81952 -40.15083 -38.27452 -36.61674 -35.42789 -33.87540 -33.47921 -33.34066 -31.90707 -31.15952 -30.13006 -27.71783 -26.75293 -25.61155 -24.49176 -23.21136 -22.02032 -21.56761 -20.52887 -19.52570 -19.16871 -17.85306 -17.61672 -17.08862 -16.43804 -16.22733 -15.94429 -15.72988 -15.62849 -14.65811 -14.58731 -14.36036 -14.22196 -14.01480 -13.76720 -13.51164 -13.40040 -13.35087 -13.20911 -13.03243 -12.98943 -12.89484 -12.54810 -12.40606 -12.05703 -11.90353 -11.81062 -11.66682 -11.45558 -11.33714 -11.00541 -10.73843 -10.42149 -10.19288 -10.17465 -10.03875 -9.47426 -9.01110 -8.50251 -8.42409 -8.01163 -7.92704 -6.38968 -3.79736 1.43101 2.30215 2.32511 2.55432 2.83146 3.22252 3.27500 3.32245 3.94224 4.12136 4.14710 4.26189 4.37599 4.53137 4.66465 4.75473 4.78432 4.84007 4.90063 4.93940 5.09765 5.12124 5.14046 5.17209 5.24379 5.27299 5.28525 5.39729 5.41238 5.49887 5.58214 5.69013 5.72455 5.82402 5.91187 6.01956 6.05492 6.10471 6.28890 6.31411 6.33907 6.94785 6.99587 7.27200 7.57609 7.71351 7.86045 8.09119 8.64493 9.20567 9.57323 10.09150 10.78756 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.001620 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.834365 B =17284.763103 C =18423.500054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.213 4.213 4 C -0.192 4.192 5 C 0.001 3.999 6 C -0.058 4.058 7 C 0.512 3.488 8 O -0.520 6.520 9 N -0.617 5.617 10 C 0.074 3.926 11 C 0.117 3.883 12 C -0.132 4.132 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 O -0.170 6.170 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 19.444 -25.234 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.232 4.232 4 C -0.211 4.211 5 C -0.050 4.050 6 C -0.098 4.098 7 C 0.299 3.701 8 O -0.395 6.395 9 N -0.351 5.351 10 C -0.069 4.069 11 C -0.005 4.005 12 C -0.171 4.171 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.759 3.241 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 O -0.066 6.066 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.880 19.332 -24.864 31.551 hybrid contribution 1.091 -0.715 0.656 1.460 sum 2.970 18.617 -24.208 30.683 Atomic orbital electron populations 1.20319 0.85095 1.04297 1.03389 1.22437 0.94004 0.84067 1.05381 1.21518 0.92621 0.99350 1.09756 1.21465 0.98253 0.93584 1.07780 1.21391 0.82716 0.93789 1.07088 1.20121 0.93691 1.00071 0.95902 1.20416 0.79990 0.78689 0.91003 1.90776 1.51468 1.50816 1.46393 1.47830 1.31662 1.48082 1.07546 1.21879 0.96429 0.99194 0.89441 1.21475 0.98849 0.98693 0.81507 1.21892 1.02202 0.97129 0.95844 1.21853 0.95006 0.94501 0.95316 1.60022 1.60037 1.07488 1.02630 1.21670 0.97309 0.98283 0.90892 1.19829 0.86888 0.87012 0.83645 1.90518 1.40547 1.62114 1.53571 1.41855 1.40132 1.26610 1.11482 1.19661 1.21799 1.03750 0.97724 0.87988 1.25264 0.97425 0.99524 0.95764 1.69611 1.36277 1.41095 1.07393 0.85908 0.79748 0.81108 0.77382 1.19952 1.20985 1.19879 1.83933 1.16133 1.35169 1.71384 0.90143 0.90372 0.89304 0.83535 0.83679 0.87036 0.85988 0.92244 0.90492 0.90890 0.90412 0.89565 0.90433 0.91933 0.95581 0.90936 0.83298 0.93925 0.89577 0.77448 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.09 7.32 -35.63 -0.26 -0.35 16 3 C -0.21 -2.11 10.81 -39.71 -0.43 -2.54 16 4 C -0.19 -1.95 10.81 -39.70 -0.43 -2.38 16 5 C 0.00 0.01 5.81 -35.62 -0.21 -0.20 16 6 C -0.06 -0.44 4.79 -29.03 -0.14 -0.58 16 7 C 0.51 5.52 7.67 -10.99 -0.08 5.44 16 8 O -0.52 -8.16 15.61 5.56 0.09 -8.07 16 9 N -0.62 -5.22 2.87 -181.57 -0.52 -5.74 16 10 C 0.07 0.32 10.24 59.84 0.61 0.93 16 11 C 0.12 1.10 5.41 -4.04 -0.02 1.08 16 12 C -0.13 -1.52 5.80 -26.73 -0.15 -1.67 16 13 C 0.06 0.82 5.69 -3.82 -0.02 0.80 16 14 N -0.67 -11.51 6.13 -115.05 -0.70 -12.21 16 15 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 16 C 0.44 10.80 7.82 -10.98 -0.09 10.72 16 17 O -0.58 -16.41 15.78 5.55 0.09 -16.33 16 18 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.30 -8.55 9.68 -14.94 -0.14 -8.70 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 23 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 O -0.17 -2.09 10.65 5.72 0.06 -2.03 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.11 0.62 7.40 -51.93 -0.38 0.24 16 34 H 0.12 0.50 8.11 -51.93 -0.42 0.08 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 37 H 0.07 0.20 6.44 -51.93 -0.33 -0.13 16 38 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.35 6.04 8.43 -39.29 -0.33 5.71 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -37.41 409.02 -7.90 -45.31 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.60 Total: 11.64 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.12 Total: 3.84 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.56 Total: -56.91 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: 0.24 Total: -26.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.41 -7.90 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754375119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.471 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds